RLG00000030172
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000639
Physical Location & Seq
Forward (+)
56966113 .. 56967514
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030172

Sequence Viewer

Length: 1197 bp
ATGAGCTGCGCCGGCTTCACGGTTCCGAAGGGATACCGATTCTATCCCTCCGACGAGGAGCTGCTTAGTCACTACTTGGAGGAGAAGAATCAGTGCAAGGACTCCCAGATCACGACCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCTCGCGAGTTACCAAAACTGGCGTTCACAGGGGCGGAAAGTCTGGGCAGGAAATTTTTCTTTTTTTTCTTCTTTTGGTTTGCAAGGGAAGTGTCTTGGGACAATCAGGGAAAGTGGTACTTCTTCACTCCGCGTGATTACAAGTACAATAACAGCACTCGCTCCAACAGGACTACAGGGGAAGGGTTTTGGAAGATCACAGGCAAGGATCGCGAAATCAAGGCCCCCGGCTCCAAAGTTGTGATTGGGAGAAAGAGGACCTTGACCTTCTACAAACGCGGAGTGCTGAAATCCCAGAAGACCAGCTGGGTTATTCATGAGTATTATCTCATTCAGGCACATTCTGATCCTCCTAAACAGAAAGGGGACTTCGTTGTCTGCTGCTTGAAGTACAAGTCAGACAACTCTGATCATGATAAGGATGCCCCATTCTGCGATCGTGGTAGCAGTAGCTGCAGTATGGCCTCCAATGTTGAAAATCAAGCTGAAGAAAATTGGGCATCGAAAGAGCTGGTTAATGTTGTTCCAATTCCCAGTGGAAATGATGATGAAGCTGAAACTGGTGGTGGTATGATTACAGAAGAGGAATACCTGGCTTTAAAGGAGTTGAGAGATGCTCTTCAGATTCCCACTGGCAATCCGCATGAATTCGAAGGCACGCAAACTGATCCTAGTCGTATAGATAAGAATGATCCTTCAACCGCTGTTGAAGGCCAACCTGATCGAGGCAATTCATCTGATATGATTGAAGAGCAGCTACTAGATGACCCAGAAAATCTGGATTCACTCTTGCATCCGCCTGCACCACCTCAACTGCATCAGCTACATCAGTCACCAATGCATACCACCAATGTCCATAATGATGAATGTCGTAAGAGGACATATCCATTTGAGGATAATGAACCTTCTCTTACGAAGAAAAATAATATCTCAACCAATGATGACGACGAATTAGTTAGCAACATCGCATCTAGTTCTGAAAATCAAGCCGCAAATGTGATTCCAGAGGTGAGAATAAGCATGCTCTTTCAACAACTTTTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

399

Amino Acids

45.39

Weight (kDa)

5.12

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 159 1.6e-32 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccII CGCG 4 cut(s) 156, 283, 363, 429
AciI CCGC 7 cut(s) 185, 281, 429, 791, 852, 947, 1140
AclWI GGATC 4 cut(s) 366, 491, 812, 836
AcsI RAATTY 2 cut(s) 203, 797
AcuI CTGAAG 2 cut(s) 657, 755
AfaI GTAC 3 cut(s) 269, 296, 542
AfiI CCNNNNNNNGG 1 cut(s) 875
AgsI TTSAA 6 cut(s) 538, 626, 849, 860, 899, 1181
AjnI CCWGG 1 cut(s) 741
AluBI AGCT 9 cut(s) 6, 61, 456, 603, 635, 661, 704, 907, 973
AluI AGCT 9 cut(s) 6, 61, 456, 603, 635, 661, 704, 907, 973
AlwI GGATC 4 cut(s) 366, 491, 812, 836
AlwNI CAGNNNCTG 1 cut(s) 603
AoxI GGCC 3 cut(s) 372, 612, 862
ApeKI GCWGC 5 cut(s) 6, 61, 531, 603, 904
ApoI RAATTY 2 cut(s) 203, 797
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 373, 408
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 975, 1171
AsuII TTCGAA 1 cut(s) 801
AvaII GGWCC 1 cut(s) 408
BarI GAAGNNNNNNTAC 2 cut(s) 891, 923
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 4 cut(s) 48, 518, 590, 916
BccI CCATC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 743
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 3 cut(s) 822, 911, 1122
BfmI CTRYAG 2 cut(s) 324, 604
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 6 cut(s) 7, 62, 532, 604, 905, 1140
BlsI GCNGC 6 cut(s) 8, 63, 533, 605, 906, 1141
Bme1390I CCNGG 2 cut(s) 378, 743
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 2 cut(s) 373, 408
BmiI GGNNCC 3 cut(s) 24, 375, 382
BmrFI CCNGG 2 cut(s) 378, 743
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 6 cut(s) 562, 659, 754, 952, 976, 1127
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 751, 783
Bpu14I TTCGAA 1 cut(s) 801
BpuMI CCSGG 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 875
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 4 cut(s) 174, 684, 715, 787
BseBI CCWGG 1 cut(s) 743
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 3 cut(s) 120, 577, 943
BseLI CCNNNNNNNGG 1 cut(s) 875
BseNI ACTGG 4 cut(s) 174, 684, 715, 787
BseRI GAGGAG 2 cut(s) 71, 95
BseXI GCAGC 4 cut(s) 48, 518, 590, 916
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 4 cut(s) 156, 283, 363, 429
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 3 cut(s) 374, 614, 864
BshVI ATCGAT 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 589
BsiSI CCGG 2 cut(s) 12, 378
BslFI GGGAC 2 cut(s) 263, 530
BslI CCNNNNNNNGG 1 cut(s) 875
BsmFI GGGAC 2 cut(s) 263, 530
BsnI GGCC 3 cut(s) 374, 614, 864
Bsp119I TTCGAA 1 cut(s) 801
Bsp143I GATC 9 cut(s) 108, 345, 358, 496, 559, 586, 817, 841, 871
Bsp68I TCGCGA 2 cut(s) 156, 363
BspACI CCGC 7 cut(s) 185, 281, 429, 791, 852, 947, 1140
BspANI GGCC 3 cut(s) 374, 614, 864
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 4 cut(s) 156, 283, 363, 429
BspHI TCATGA 2 cut(s) 466, 562
BspLI GGNNCC 3 cut(s) 24, 375, 382
BspMAI CTGCAG 1 cut(s) 608
BspPI GGATC 4 cut(s) 366, 491, 812, 836
BspQI GCTCTTC 2 cut(s) 774, 894
BspT104I TTCGAA 1 cut(s) 801
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 4 cut(s) 174, 684, 715, 787
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 9 cut(s) 108, 345, 358, 496, 559, 586, 817, 841, 871
BssSI CACGAG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 3 cut(s) 726, 774, 894
BstAPI GCANNNNNTGC 1 cut(s) 603
BstBI TTCGAA 1 cut(s) 801
BstC8I GCNNGC 5 cut(s) 13, 143, 809, 951, 1172
BstDEI CTNAG 1 cut(s) 65
BstENI CCTNNNNNAGG 1 cut(s) 873
BstF5I GGATG 3 cut(s) 120, 577, 943
BstFNI CGCG 4 cut(s) 156, 283, 363, 429
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 9 cut(s) 111, 348, 361, 499, 562, 589, 820, 844, 874
BstMBI GATC 9 cut(s) 108, 345, 358, 496, 559, 586, 817, 841, 871
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 3 cut(s) 12, 360, 603
BstNI CCWGG 1 cut(s) 743
BstNSI RCATGY 1 cut(s) 1174
BstSCI CCNGG 2 cut(s) 376, 741
BstSFI CTRYAG 2 cut(s) 324, 604
BstUI CGCG 4 cut(s) 156, 283, 363, 429
BstV1I GCAGC 4 cut(s) 48, 518, 590, 916
BstV2I GAAGAC 1 cut(s) 455
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 374, 614, 864
BsuTUI ATCGAT 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 1099
BtsCI GGATG 3 cut(s) 120, 577, 943
BtsIMutI CAGTG 3 cut(s) 98, 691, 780
BtuMI TCGCGA 2 cut(s) 156, 363
Cac8I GCNNGC 5 cut(s) 13, 143, 809, 951, 1172
CaiI CAGNNNCTG 1 cut(s) 603
CciI TCATGA 2 cut(s) 466, 562
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 373, 408
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 3 cut(s) 268, 295, 541
CviAII CATG 4 cut(s) 467, 563, 794, 1171
CviQI GTAC 3 cut(s) 268, 295, 541
DdeI CTNAG 1 cut(s) 65
DpnI GATC 9 cut(s) 110, 347, 360, 498, 561, 588, 819, 843, 873
DpnII GATC 9 cut(s) 108, 345, 358, 496, 559, 586, 817, 841, 871
DraI TTTAAA 1 cut(s) 750
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
Eam1104I CTCTTC 3 cut(s) 726, 774, 894
EarI CTCTTC 3 cut(s) 726, 774, 894
EciI GGCGGA 2 cut(s) 200, 936
Eco47I GGWCC 1 cut(s) 408
Eco57I CTGAAG 2 cut(s) 657, 755
EcoNI CCTNNNNNAGG 1 cut(s) 873
EcoO109I RGGNCCY 2 cut(s) 373, 408
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 741
EcoT22I ATGCAT 1 cut(s) 993
FaeI CATG 4 cut(s) 470, 566, 797, 1174
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 395, 427
FaqI GGGAC 2 cut(s) 263, 530
FatI CATG 4 cut(s) 466, 562, 793, 1170
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 6 cut(s) 7, 62, 532, 604, 905, 1140
FokI GGATG 3 cut(s) 107, 584, 930
Fsp4HI GCNGC 6 cut(s) 7, 62, 532, 604, 905, 1140
FspBI CTAG 3 cut(s) 822, 911, 1122
GlaI GCGC 1 cut(s) 10
GluI GCNGC 6 cut(s) 7, 62, 532, 604, 905, 1140
GsaI CCCAGC 1 cut(s) 460
HaeIII GGCC 3 cut(s) 374, 614, 864
HapII CCGG 2 cut(s) 12, 378
HhaI GCGC 1 cut(s) 11
Hin1II CATG 4 cut(s) 470, 566, 797, 1174
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 6 cut(s) 39, 88, 101, 775, 932, 1150
HpaII CCGG 2 cut(s) 12, 378
HphI GGTGA 2 cut(s) 975, 1171
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 8 cut(s) 27, 52, 496, 550, 559, 774, 889, 1129
Hpy188III TCNNGA 7 cut(s) 112, 155, 362, 467, 563, 929, 1154
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 2 cut(s) 56, 1100
HpyAV CCTTC 7 cut(s) 22, 326, 427, 797, 854, 855, 1065
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 8 cut(s) 96, 141, 233, 606, 943, 953, 967, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 360, 603
HpyF3I CTNAG 1 cut(s) 65
Hsp92II CATG 4 cut(s) 470, 566, 797, 1174
HspAI GCGC 1 cut(s) 9
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 9 cut(s) 108, 345, 358, 496, 559, 586, 817, 841, 871
LguI GCTCTTC 2 cut(s) 774, 894
LmnI GCTCC 3 cut(s) 58, 317, 386
Lsp1109I GCAGC 4 cut(s) 48, 518, 590, 916
LweI GCATC 6 cut(s) 562, 659, 754, 952, 976, 1127
MaeI CTAG 3 cut(s) 822, 911, 1122
MaeIII GTNAC 3 cut(s) 68, 159, 981
MalI GATC 9 cut(s) 110, 347, 360, 498, 561, 588, 819, 843, 873
MboI GATC 9 cut(s) 108, 345, 358, 496, 559, 586, 817, 841, 871
MluCI AATT 6 cut(s) 203, 643, 678, 797, 880, 1100
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 75, 339
Mph1103I ATGCAT 1 cut(s) 993
MroNI GCCGGC 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 2 cut(s) 666, 749
MslI CAYNNNNRTG 1 cut(s) 1011
MspA1I CMGCKG 2 cut(s) 456, 854
MspI CCGG 2 cut(s) 12, 378
MspR9I CCNGG 2 cut(s) 378, 743
MvaI CCWGG 1 cut(s) 743
MvnI CGCG 4 cut(s) 156, 283, 363, 429
MwoI GCNNNNNNNGC 3 cut(s) 12, 360, 603
NaeI GCCGGC 1 cut(s) 13
NciI CCSGG 1 cut(s) 378
NdeII GATC 9 cut(s) 108, 345, 358, 496, 559, 586, 817, 841, 871
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 4 cut(s) 470, 566, 797, 1174
NlaIV GGNNCC 3 cut(s) 24, 375, 382
NmuCI GTSAC 2 cut(s) 68, 981
NruI TCGCGA 2 cut(s) 156, 363
NsiI ATGCAT 1 cut(s) 993
NspI RCATGY 1 cut(s) 1174
NspV TTCGAA 1 cut(s) 801
PaeI GCATGC 1 cut(s) 1174
PagI TCATGA 2 cut(s) 466, 562
PciSI GCTCTTC 2 cut(s) 774, 894
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdiI GCCGGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 5 cut(s) 39, 88, 775, 932, 1150
PkrI GCNGC 6 cut(s) 8, 63, 533, 605, 906, 1141
Ple19I CGATCG 1 cut(s) 589
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 741
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 3 cut(s) 24, 375, 382
PspPI GGNCC 2 cut(s) 373, 408
PspPPI RGGWCCY 1 cut(s) 408
PstI CTGCAG 1 cut(s) 608
PstNI CAGNNNCTG 1 cut(s) 603
PvuI CGATCG 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 456
RruI TCGCGA 2 cut(s) 156, 363
RsaI GTAC 3 cut(s) 269, 296, 542
RsaNI GTAC 3 cut(s) 268, 295, 541
RseI CAYNNNNRTG 1 cut(s) 1011
SapI GCTCTTC 2 cut(s) 774, 894
SaqAI TTAA 2 cut(s) 666, 749
SatI GCNGC 6 cut(s) 7, 62, 532, 604, 905, 1140
Sau3AI GATC 9 cut(s) 108, 345, 358, 496, 559, 586, 817, 841, 871
Sau96I GGNCC 2 cut(s) 373, 408
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 378, 743
SfaNI GCATC 6 cut(s) 562, 659, 754, 952, 976, 1127
SfcI CTRYAG 2 cut(s) 324, 604
SfuI TTCGAA 1 cut(s) 801
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 1011
SphI GCATGC 1 cut(s) 1174
Sse9I AATT 6 cut(s) 203, 643, 678, 797, 880, 1100
SsiI CCGC 7 cut(s) 185, 281, 429, 791, 852, 947, 1140
SspMI CTAG 3 cut(s) 822, 911, 1122
StyD4I CCNGG 2 cut(s) 376, 741
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 4 cut(s) 132, 653, 801, 874
TasI AATT 6 cut(s) 203, 643, 678, 797, 880, 1100
TatI WGTACW 2 cut(s) 294, 540
TauI GCSGC 1 cut(s) 1142
TfiI GAWTC 5 cut(s) 39, 88, 775, 932, 1150
Tru1I TTAA 2 cut(s) 666, 749
Tru9I TTAA 2 cut(s) 666, 749
TscAI CASTG 3 cut(s) 98, 691, 787
TseFI GTSAC 2 cut(s) 68, 981
TseI GCWGC 5 cut(s) 6, 61, 531, 603, 904
Tsp45I GTSAC 2 cut(s) 68, 981
TspDTI ATGAA 6 cut(s) 455, 714, 810, 873, 1029, 1065
TspRI CASTG 3 cut(s) 98, 691, 787
VpaK11BI GGWCC 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 873
XapI RAATTY 2 cut(s) 203, 797
XceI RCATGY 1 cut(s) 1174
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 3 cut(s) 822, 911, 1122
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.