RchiOBHm_Chr1g0361611
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000639
Physical Location & Seq
Reverse (-)
53492563 .. 53493621
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58647

Sequence Viewer

Length: 1059 bp
ATGAGCTGGGGCCTTTTCACAGTTCCACCAGGATACCGATTACGTCCCACCGACGAGGAGCTGCTGAGTGACTTGGAGAAGCAGAATCAGGGCAAGGACTCCCAAATCATGTCCATCATCCCTGAAATCGAGGTGTGCAAGCACGAGCCTCGTGAGCTACCAGGTGATCCATCTCCGGAACCAGAACACCATCAATTTCAATTATTATTATTAATGATCCAGTCATGTTTATTGTGTTGCGTTTTTGCAGAACTGGCGTTTAGAAGGCGGCAAAATCTGGGGAGGAAGCTCTTCTTTTTCTTCTTCTTTTGGTTTACAAGGGCAGAGTCTTGGTATAGTCAGGGCAAGTGGTACTTCTTCGCTCCGCGTGAATACAAGTACCCTAAGAGTAATCGCTCCAACAGGACTACAGGGGAAGGGTCCTGGAAGGTCACAAGCAAGGACCGAGACATCAAGGCGCCGGGCACCAAAGCTGTGATTGGGAGAAAGAGGACCTTGACCTTCTACATTAAACGTGGAGTGCTGAAACCCCAGAAGACCGGCTGGGTCATTCATGAGTATTATCTCACTCGGGCAAATTCTGATGAGCAGATAGGGGACTTTGTTGTCTGTTGCTTGAAGTACAAGTCAGACAACTCTGATCATCATGAGGATGCCCCATTCTTCTATCGCGGTAGCGGTAGCGGTAGCTGCAGTATGGTCTCCAATGTTGCAAATCAGGCTGAAGAAAATTTGGCATCCAATGAGCAGGTTAATGTTGTTCCAATTCCCAATGGCAATGATGGAGAATCTGAAACTGGTGGTGGTAGGATTACTGAAGCAGAAGAACGTCTGGCATTTAAGAAGCTGGGAGATGCTCTTCAGATTCCCATTGGAAATCAGCATGAAGTCCCAGGCTTGCAAATTGATCCTTGTAATCTTTCGACCTCTGTTGAAGGTCAAGCTGATAGAATTAATTCATCTGATATGAATGAAGAGGTTAGAACAAACTTTCATTTTGATTTCTGCTATGAAATTTTCAATATGAAGCACAAGAAGTATATTGGAAATGTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

352

Amino Acids

40.35

Weight (kDa)

6.34

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 57 1.8e-07 No apical meristem (NAM) protein
NAM PF02365 113 - 188 9.2e-19 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 739
AccB1I GGYRCC 2 cut(s) 457, 464
AccII CGCG 2 cut(s) 367, 672
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 5 cut(s) 268, 365, 672, 678, 684
AclWI GGATC 3 cut(s) 161, 211, 902
AcsI RAATTY 3 cut(s) 577, 730, 1014
AcuI CTGAAG 3 cut(s) 744, 837, 845
AcyI GRCGYC 1 cut(s) 458
AfaI GTAC 3 cut(s) 353, 380, 623
AgsI TTSAA 4 cut(s) 200, 619, 935, 1021
AjnI CCWGG 4 cut(s) 28, 160, 422, 892
AluBI AGCT 8 cut(s) 6, 61, 157, 289, 473, 690, 847, 944
AluI AGCT 8 cut(s) 6, 61, 157, 289, 473, 690, 847, 944
Alw26I GTCTC 2 cut(s) 441, 706
AlwI GGATC 3 cut(s) 161, 211, 902
Ama87I CYCGRG 1 cut(s) 570
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 61, 690
ApoI RAATTY 3 cut(s) 577, 730, 1014
AseI ATTAAT 2 cut(s) 212, 954
Asp700I GAANNNNTTC 2 cut(s) 290, 955
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 4 cut(s) 10, 420, 442, 492
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 570
AvaII GGWCC 3 cut(s) 420, 442, 492
BaeGI GKGCMC 1 cut(s) 467
BanI GGYRCC 2 cut(s) 457, 464
BauI CACGAG 2 cut(s) 143, 150
BbsI GAAGAC 1 cut(s) 542
BbvI GCAGC 2 cut(s) 48, 677
BccI CCATC 4 cut(s) 122, 178, 198, 776
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 4 cut(s) 30, 162, 424, 894
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 640
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 2 cut(s) 441, 706
BfmI CTRYAG 2 cut(s) 408, 691
BfoI RGCGCY 1 cut(s) 461
BfuAI ACCTGC 1 cut(s) 739
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 3 cut(s) 62, 269, 691
BlsI GCNGC 3 cut(s) 63, 270, 692
Bme1390I CCNGG 5 cut(s) 30, 162, 424, 462, 894
Bme18I GGWCC 3 cut(s) 420, 442, 492
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 4 cut(s) 10, 420, 442, 492
BmiI GGNNCC 5 cut(s) 11, 180, 421, 459, 466
BmrFI CCNGG 5 cut(s) 30, 162, 424, 462, 894
BmsI GCATC 3 cut(s) 643, 746, 844
BpiI GAAGAC 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 458
BsaI GGTCTC 1 cut(s) 706
BsaJI CCNNGG 1 cut(s) 892
BsaWI WCCGGW 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 539
Bse1I ACTGG 3 cut(s) 220, 258, 802
Bse3DI GCAATG 1 cut(s) 784
BseAI TCCGGA 1 cut(s) 175
BseBI CCWGG 4 cut(s) 30, 162, 424, 894
BseDI CCNNGG 1 cut(s) 892
BseGI GGATG 3 cut(s) 117, 658, 737
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 3 cut(s) 220, 258, 802
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 2 cut(s) 48, 677
BseYI CCCAGC 3 cut(s) 6, 543, 847
Bsh1236I CGCG 2 cut(s) 367, 672
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 2 cut(s) 457, 464
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 3 cut(s) 176, 461, 540
BslFI GGGAC 3 cut(s) 30, 611, 875
BsmAI GTCTC 2 cut(s) 441, 706
BsmFI GGGAC 3 cut(s) 30, 611, 875
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 706
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 467
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 4 cut(s) 166, 216, 640, 907
BspACI CCGC 5 cut(s) 268, 365, 672, 678, 684
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 175
BspFNI CGCG 2 cut(s) 367, 672
BspHI TCATGA 2 cut(s) 553, 646
BspLI GGNNCC 5 cut(s) 11, 180, 421, 459, 466
BspMAI CTGCAG 1 cut(s) 695
BspMI ACCTGC 1 cut(s) 739
BspPI GGATC 3 cut(s) 161, 211, 902
BspQI GCTCTTC 2 cut(s) 296, 864
BspT107I GGYRCC 2 cut(s) 457, 464
BspTNI GGTCTC 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 784
BsrFI RCCGGY 1 cut(s) 539
BsrI ACTGG 3 cut(s) 220, 258, 802
BssAI RCCGGY 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 892
BssMI GATC 4 cut(s) 166, 216, 640, 907
BssNI GRCGYC 1 cut(s) 458
BssSI CACGAG 2 cut(s) 143, 150
Bst2BI CACGAG 2 cut(s) 143, 150
Bst2UI CCWGG 4 cut(s) 30, 162, 424, 894
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 3 cut(s) 296, 864, 969
BstACI GRCGYC 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 140, 899
BstDEI CTNAG 2 cut(s) 65, 384
BstF5I GGATG 3 cut(s) 117, 658, 737
BstFNI CGCG 2 cut(s) 367, 672
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 169, 219, 643, 910
BstMAI GTCTC 2 cut(s) 441, 706
BstMBI GATC 4 cut(s) 166, 216, 640, 907
BstMWI GCNNNNNNNGC 4 cut(s) 154, 254, 690, 719
BstNI CCWGG 4 cut(s) 30, 162, 424, 894
BstSCI CCNGG 5 cut(s) 28, 160, 422, 460, 892
BstSFI CTRYAG 2 cut(s) 408, 691
BstSLI GKGCMC 1 cut(s) 467
BstUI CGCG 2 cut(s) 367, 672
BstV1I GCAGC 2 cut(s) 48, 677
BstV2I GAAGAC 1 cut(s) 542
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 3 cut(s) 117, 658, 737
BveI ACCTGC 1 cut(s) 739
Cac8I GCNNGC 2 cut(s) 140, 899
CciI TCATGA 2 cut(s) 553, 646
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 539
Cfr13I GGNCC 4 cut(s) 10, 420, 442, 492
CsiI ACCWGGT 1 cut(s) 160
Csp6I GTAC 3 cut(s) 352, 379, 622
CviAII CATG 5 cut(s) 109, 225, 554, 647, 884
CviQI GTAC 3 cut(s) 352, 379, 622
DdeI CTNAG 2 cut(s) 65, 384
DinI GGCGCC 1 cut(s) 459
DpnI GATC 4 cut(s) 168, 218, 642, 909
DpnII GATC 4 cut(s) 166, 216, 640, 907
DrdI GACNNNNNNGTC 1 cut(s) 605
DseDI GACNNNNNNGTC 1 cut(s) 605
Eam1104I CTCTTC 3 cut(s) 296, 864, 969
EarI CTCTTC 3 cut(s) 296, 864, 969
Eco31I GGTCTC 1 cut(s) 706
Eco47I GGWCC 3 cut(s) 420, 442, 492
Eco57I CTGAAG 3 cut(s) 744, 837, 845
Eco88I CYCGRG 1 cut(s) 570
EcoO109I RGGNCCY 3 cut(s) 10, 420, 492
EcoRII CCWGG 4 cut(s) 28, 160, 422, 892
EgeI GGCGCC 1 cut(s) 459
EheI GGCGCC 1 cut(s) 459
FaeI CATG 5 cut(s) 112, 228, 557, 650, 887
FalI AAGNNNNNCTT 6 cut(s) 278, 310, 338, 370, 479, 511
FaqI GGGAC 3 cut(s) 30, 611, 875
FatI CATG 5 cut(s) 108, 224, 553, 646, 883
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 3 cut(s) 62, 269, 691
FokI GGATG 3 cut(s) 104, 665, 724
Fsp4HI GCNGC 3 cut(s) 62, 269, 691
GlaI GCGC 1 cut(s) 459
GluI GCNGC 3 cut(s) 62, 269, 691
GsaI CCCAGC 3 cut(s) 10, 547, 851
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 1 cut(s) 12
HapII CCGG 3 cut(s) 176, 461, 540
HhaI GCGC 1 cut(s) 460
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 5 cut(s) 112, 228, 557, 650, 887
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HinfI GANTC 5 cut(s) 85, 98, 326, 788, 865
HpaI GTTAAC 1 cut(s) 1054
HpaII CCGG 3 cut(s) 176, 461, 540
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 315, 1054
Hpy188I TCNGA 6 cut(s) 583, 631, 640, 793, 864, 964
Hpy188III TCNNGA 4 cut(s) 152, 176, 554, 647
Hpy8I GTNNAC 2 cut(s) 315, 1054
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 5 cut(s) 258, 410, 421, 511, 929
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 3 cut(s) 43, 514, 829
HpyCH4V TGCA 5 cut(s) 138, 248, 693, 713, 901
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 254, 690, 719
HpyF3I CTNAG 2 cut(s) 65, 384
HpySE526I ACGT 3 cut(s) 43, 514, 829
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 5 cut(s) 112, 228, 557, 650, 887
HspAI GCGC 1 cut(s) 458
KasI GGCGCC 1 cut(s) 457
Kpn2I TCCGGA 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 640
KspAI GTTAAC 1 cut(s) 1054
Kzo9I GATC 4 cut(s) 166, 216, 640, 907
LguI GCTCTTC 2 cut(s) 296, 864
LmnI GCTCC 3 cut(s) 58, 367, 401
Lsp1109I GCAGC 2 cut(s) 48, 677
LweI GCATC 3 cut(s) 643, 746, 844
MabI ACCWGGT 1 cut(s) 160
MaeII ACGT 3 cut(s) 43, 514, 829
MaeIII GTNAC 2 cut(s) 68, 430
MalI GATC 4 cut(s) 168, 218, 642, 909
MboI GATC 4 cut(s) 166, 216, 640, 907
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 9 cut(s) 194, 200, 577, 730, 765, 903, 951, 955, 1014
Mly113I GGCGCC 1 cut(s) 458
MlyI GAGTC 2 cut(s) 92, 335
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 8 cut(s) 49, 124, 159, 276, 483, 643, 937, 970
MroI TCCGGA 1 cut(s) 175
MroXI GAANNNNTTC 2 cut(s) 290, 955
MseI TTAA 6 cut(s) 212, 510, 753, 840, 954, 1053
MslI CAYNNNNRTG 1 cut(s) 651
MspI CCGG 3 cut(s) 176, 461, 540
MspR9I CCNGG 5 cut(s) 30, 162, 424, 462, 894
MvaI CCWGG 4 cut(s) 30, 162, 424, 894
MvnI CGCG 2 cut(s) 367, 672
MwoI GCNNNNNNNGC 4 cut(s) 154, 254, 690, 719
NarI GGCGCC 1 cut(s) 458
NciI CCSGG 1 cut(s) 462
NdeII GATC 4 cut(s) 166, 216, 640, 907
NlaIII CATG 5 cut(s) 112, 228, 557, 650, 887
NlaIV GGNNCC 5 cut(s) 11, 180, 421, 459, 466
NmuCI GTSAC 2 cut(s) 68, 430
PagI TCATGA 2 cut(s) 553, 646
PciSI GCTCTTC 2 cut(s) 296, 864
PdmI GAANNNNTTC 2 cut(s) 290, 955
PfeI GAWTC 3 cut(s) 85, 788, 865
PfoI TCCNGGA 1 cut(s) 422
PkrI GCNGC 3 cut(s) 63, 270, 692
PleI GAGTC 2 cut(s) 92, 334
PluTI GGCGCC 1 cut(s) 461
PpsI GAGTC 2 cut(s) 92, 334
PpuMI RGGWCCY 2 cut(s) 420, 492
PshBI ATTAAT 2 cut(s) 212, 954
Psp5II RGGWCCY 2 cut(s) 420, 492
Psp6I CCWGG 4 cut(s) 28, 160, 422, 892
PspFI CCCAGC 3 cut(s) 6, 543, 847
PspGI CCWGG 4 cut(s) 28, 160, 422, 892
PspN4I GGNNCC 5 cut(s) 11, 180, 421, 459, 466
PspPI GGNCC 4 cut(s) 10, 420, 442, 492
PspPPI RGGWCCY 2 cut(s) 420, 492
PstI CTGCAG 1 cut(s) 695
RsaI GTAC 3 cut(s) 353, 380, 623
RsaNI GTAC 3 cut(s) 352, 379, 622
RseI CAYNNNNRTG 1 cut(s) 651
SapI GCTCTTC 2 cut(s) 296, 864
SaqAI TTAA 6 cut(s) 212, 510, 753, 840, 954, 1053
SatI GCNGC 3 cut(s) 62, 269, 691
Sau3AI GATC 4 cut(s) 166, 216, 640, 907
Sau96I GGNCC 4 cut(s) 10, 420, 442, 492
SchI GAGTC 2 cut(s) 92, 335
ScrFI CCNGG 5 cut(s) 30, 162, 424, 462, 894
SduI GDGCHC 1 cut(s) 467
SexAI ACCWGGT 1 cut(s) 160
SfaNI GCATC 3 cut(s) 643, 746, 844
SfcI CTRYAG 2 cut(s) 408, 691
SfoI GGCGCC 1 cut(s) 459
SinI GGWCC 3 cut(s) 420, 442, 492
SmiMI CAYNNNNRTG 1 cut(s) 651
Sse9I AATT 9 cut(s) 194, 200, 577, 730, 765, 903, 951, 955, 1014
SsiI CCGC 5 cut(s) 268, 365, 672, 678, 684
SspDI GGCGCC 1 cut(s) 457
StyD4I CCNGG 5 cut(s) 28, 160, 422, 460, 892
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 3 cut(s) 46, 517, 832
TaqI TCGA 2 cut(s) 129, 923
TaqII GACCGA 1 cut(s) 459
TasI AATT 9 cut(s) 194, 200, 577, 730, 765, 903, 951, 955, 1014
TatI WGTACW 1 cut(s) 621
TauI GCSGC 1 cut(s) 271
TfiI GAWTC 3 cut(s) 85, 788, 865
Tru1I TTAA 6 cut(s) 212, 510, 753, 840, 954, 1053
Tru9I TTAA 6 cut(s) 212, 510, 753, 840, 954, 1053
TseFI GTSAC 2 cut(s) 68, 430
TseI GCWGC 2 cut(s) 61, 690
Tsp45I GTSAC 2 cut(s) 68, 430
TspDTI ATGAA 8 cut(s) 542, 900, 948, 983, 983, 987, 1026, 1040
VpaK11BI GGWCC 3 cut(s) 420, 442, 492
VspI ATTAAT 2 cut(s) 212, 954
XapI RAATTY 3 cut(s) 577, 730, 1014
XmnI GAANNNNTTC 2 cut(s) 290, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.