Rmu_co8459497.1_g000001
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8459497.1
OG0000639
Physical Location & Seq
Reverse (-)
2 .. 1743
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8459497.1_g000001.1.cds

Sequence Viewer

Length: 1247 bp
ctggcgttcacagggcaggaaaatctggggaggaaacttttcttctttttcttcttttggtttacaagggcagagtcttgggatagtcagggcaagtggtacttcttcgctccgcgtgattacaagtaccctaacagcagtactcgctccaacaggactacaggggaagggtcctggaagcccacaggcaacgtccaagacatcaaggccccgggctccgaagctgtcattgggagaaagaggatcttgaccttccaaaaacgtggagtgccgaaatcccacaagagcagctgggttattcatgagtattatcacattcagccccattctgaccctcctaagcagataggggactttgttgtctgttgcttgaagtacaagtcagacaactctgatcatgatgaggatgcaccattctgcaatcgaggtagcggtagctgcagtatggtttccgatgttgcaaatcagctggttgaagaaaatttggcgtccaatgagcagtttaatggcactgatgatgaagctgaaactggtggcggtacgattactgaagcagaagaatacctggcatataagaagctgagagatgagcttgggattcccatcggaaatcagaatgaattccaaggctcgcagactgatccttgtaatctttggacctctgttgaaggtcaagctgatagaagcaattcgtctcatcatatgaatgaagagcaactggatgatccagaaaatatggattccttctttcgtacacctgcgccccctcaactgcatcagctacatcagtcaccgatgaataccaccaatgtccataatgatgaatgctgtaagaggaaatatccatttgaagataatgactcttctcttaataagaagaacaatatttcaagcaatgatggtgatgaactagtcagcaacaccacttctaattctgaaaaccaagctgcagatgtgatcctagagggtgactctgttatctgtcgcttgaagaataaatcagataagaagggttctcttgtaagtgatgaaggggaaccggatagcacgggtgtgtctaattggaaaattcaggcggctcaggcactcaaaaatgatgaaccactttttcatcaacctcagcctctggattactgctgctcctctgcagtgtggacatccttagagctggaagctgttctgcaagccattggcactgatgatgattgtaataagttgcaatcaccatgtggagataatacttcttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

415

Amino Acids

46.43

Weight (kDa)

4.79

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 766
AasI GACNNNNNNGTC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 766
AccII CGCG 1 cut(s) 115
AciI CCGC 4 cut(s) 113, 432, 537, 1076
AclWI GGATC 4 cut(s) 251, 635, 719, 952
AcsI RAATTY 3 cut(s) 481, 620, 1068
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 1 cut(s) 488
AdeI CACNNNGTG 1 cut(s) 1229
AfaI GTAC 6 cut(s) 101, 128, 142, 377, 541, 754
AgsI TTSAA 6 cut(s) 373, 476, 668, 851, 891, 991
AhlI ACTAGT 1 cut(s) 910
AjnI CCWGG 2 cut(s) 173, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AleI CACNNNNGTG 1 cut(s) 1052
Alw26I GTCTC 1 cut(s) 699
AlwI GGATC 4 cut(s) 251, 635, 719, 952
AlwNI CAGNNNCTG 1 cut(s) 1126
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 4 cut(s) 288, 438, 947, 1137
ApoI RAATTY 3 cut(s) 481, 620, 1068
Asp700I GAANNNNTTC 4 cut(s) 38, 620, 688, 1176
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 3 cut(s) 171, 208, 657
AsuC2I CCSGG 2 cut(s) 212, 213
AsuHPI GGTGA 4 cut(s) 783, 914, 980, 1215
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 2 cut(s) 171, 657
BanII GRGCYC 1 cut(s) 218
BbvCI CCTCAGC 1 cut(s) 1119
BbvI GCAGC 4 cut(s) 300, 425, 934, 1124
BccI CCATC 2 cut(s) 611, 893
BciT130I CCWGG 2 cut(s) 175, 566
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 2 cut(s) 212, 213
BcoDI GTCTC 1 cut(s) 699
BcuI ACTAGT 1 cut(s) 910
BfaI CTAG 2 cut(s) 911, 962
BfmI CTRYAG 4 cut(s) 159, 439, 948, 1146
BfuAI ACCTGC 1 cut(s) 766
BisI GCNGC 5 cut(s) 289, 439, 948, 1077, 1138
BlsI GCNGC 5 cut(s) 290, 440, 949, 1078, 1139
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 4 cut(s) 175, 212, 213, 566
Bme18I GGWCC 2 cut(s) 171, 657
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 3 cut(s) 171, 208, 657
BmiI GGNNCC 4 cut(s) 172, 210, 217, 1038
BmrFI CCNGG 4 cut(s) 175, 212, 213, 566
BmsI GCATC 2 cut(s) 397, 784
BplI GAGNNNNNCTC 2 cut(s) 956, 988
Bpu10I CCTNAGC 3 cut(s) 339, 1080, 1119
BpuMI CCSGG 2 cut(s) 212, 213
BsaBI GATNNNNATC 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 210, 211, 625
BsaWI WCCGGW 1 cut(s) 1039
BsaXI ACNNNNNCTCC 2 cut(s) 1124, 1154
Bse1I ACTGG 2 cut(s) 535, 723
Bse3DI GCAATG 1 cut(s) 901
Bse8I GATNNNNATC 1 cut(s) 602
BseBI CCWGG 2 cut(s) 175, 566
BseDI CCNNGG 3 cut(s) 210, 211, 625
BseGI GGATG 3 cut(s) 412, 727, 1157
BseJI GATNNNNATC 1 cut(s) 602
BseMI GCAATG 1 cut(s) 901
BseMII CTCAG 3 cut(s) 572, 1094, 1133
BseNI ACTGG 2 cut(s) 535, 723
BseRI GAGGAG 1 cut(s) 1132
BseXI GCAGC 4 cut(s) 300, 425, 934, 1124
BseYI CCCAGC 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 2 cut(s) 212, 1040
BslFI GGGAC 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 699
BsmBI CGTCTC 1 cut(s) 699
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 5 cut(s) 243, 394, 640, 724, 957
BspACI CCGC 4 cut(s) 113, 432, 537, 1076
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 3 cut(s) 573, 1093, 1132
BspFNI CGCG 1 cut(s) 115
BspHI TCATGA 2 cut(s) 301, 397
BspLI GGNNCC 4 cut(s) 172, 210, 217, 1038
BspMAI CTGCAG 3 cut(s) 443, 952, 1150
BspMI ACCTGC 1 cut(s) 766
BspPI GGATC 4 cut(s) 251, 635, 719, 952
BspQI GCTCTTC 1 cut(s) 705
BsrDI GCAATG 1 cut(s) 901
BsrI ACTGG 2 cut(s) 535, 723
BssECI CCNNGG 3 cut(s) 210, 211, 625
BssMI GATC 5 cut(s) 243, 394, 640, 724, 957
BssNI GRCGYC 1 cut(s) 488
BssT1I CCWWGG 1 cut(s) 625
Bst2UI CCWGG 2 cut(s) 175, 566
Bst6I CTCTTC 2 cut(s) 705, 868
BstACI GRCGYC 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 632, 1185
BstDEI CTNAG 5 cut(s) 339, 581, 1080, 1119, 1162
BstF5I GGATG 3 cut(s) 412, 727, 1157
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 5 cut(s) 246, 397, 643, 727, 960
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 5 cut(s) 243, 394, 640, 724, 957
BstMWI GCNNNNNNNGC 3 cut(s) 144, 438, 1082
BstNI CCWGG 2 cut(s) 175, 566
BstSCI CCNGG 4 cut(s) 173, 210, 211, 564
BstSFI CTRYAG 4 cut(s) 159, 439, 948, 1146
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 4 cut(s) 300, 425, 934, 1124
BstX2I RGATCY 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 3 cut(s) 412, 727, 1157
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 3 cut(s) 510, 1155, 1194
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 2 cut(s) 632, 1185
CaiI CAGNNNCTG 1 cut(s) 1126
CciI TCATGA 2 cut(s) 301, 397
CfoI GCGC 1 cut(s) 763
Cfr13I GGNCC 3 cut(s) 171, 208, 657
Cfr9I CCCGGG 1 cut(s) 211
CseI GACGC 1 cut(s) 477
Csp6I GTAC 6 cut(s) 100, 127, 141, 376, 540, 753
CviAII CATG 3 cut(s) 302, 398, 1227
CviQI GTAC 6 cut(s) 100, 127, 141, 376, 540, 753
DdeI CTNAG 5 cut(s) 339, 581, 1080, 1119, 1162
DpnI GATC 5 cut(s) 245, 396, 642, 726, 959
DpnII GATC 5 cut(s) 243, 394, 640, 724, 957
DraIII CACNNNGTG 1 cut(s) 1229
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
Eam1104I CTCTTC 2 cut(s) 705, 868
EarI CTCTTC 2 cut(s) 705, 868
Eco130I CCWWGG 1 cut(s) 625
Eco24I GRGCYC 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 171, 657
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 211
EcoO109I RGGNCCY 2 cut(s) 171, 208
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 2 cut(s) 173, 564
EcoT14I CCWWGG 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 625
Esp3I CGTCTC 1 cut(s) 699
FaeI CATG 3 cut(s) 305, 401, 1230
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 230, 262
FaqI GGGAC 1 cut(s) 365
FatI CATG 3 cut(s) 301, 397, 1226
FauNDI CATATG 1 cut(s) 702
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 5 cut(s) 289, 439, 948, 1077, 1138
FokI GGATG 3 cut(s) 419, 734, 1144
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 5 cut(s) 289, 439, 948, 1077, 1138
FspBI CTAG 2 cut(s) 911, 962
GlaI GCGC 1 cut(s) 762
GluI GCNGC 5 cut(s) 289, 439, 948, 1077, 1138
GsaI CCCAGC 1 cut(s) 295
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 212, 1040
HgaI GACGC 1 cut(s) 477
HhaI GCGC 1 cut(s) 763
Hin1I GRCGYC 1 cut(s) 488
Hin1II CATG 3 cut(s) 305, 401, 1230
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HinfI GANTC 5 cut(s) 74, 598, 740, 860, 971
HpaII CCGG 2 cut(s) 212, 1040
HphI GGTGA 4 cut(s) 783, 914, 980, 1215
Hpy166II GTNNAC 4 cut(s) 9, 63, 755, 1155
Hpy188I TCNGA 9 cut(s) 220, 331, 385, 394, 454, 608, 615, 937, 1003
Hpy188III TCNNGA 5 cut(s) 247, 302, 398, 728, 1127
Hpy8I GTNNAC 4 cut(s) 9, 63, 755, 1155
HpyAV CCTTC 6 cut(s) 161, 262, 662, 754, 1003, 1025
HpyCH4IV ACGT 2 cut(s) 192, 262
HpyCH4V TGCA 9 cut(s) 410, 420, 441, 461, 775, 950, 1148, 1183, 1219
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 438, 1082
HpyF3I CTNAG 5 cut(s) 339, 581, 1080, 1119, 1162
HpySE526I ACGT 2 cut(s) 192, 262
Hsp92I GRCGYC 1 cut(s) 488
Hsp92II CATG 3 cut(s) 305, 401, 1230
HspAI GCGC 1 cut(s) 761
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 5 cut(s) 243, 394, 640, 724, 957
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 4 cut(s) 115, 152, 221, 1145
Lsp1109I GCAGC 4 cut(s) 300, 425, 934, 1124
LweI GCATC 2 cut(s) 397, 784
MaeI CTAG 2 cut(s) 911, 962
MaeII ACGT 2 cut(s) 192, 262
MaeIII GTNAC 2 cut(s) 789, 968
MalI GATC 5 cut(s) 245, 396, 642, 726, 959
MboI GATC 5 cut(s) 243, 394, 640, 724, 957
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 6 cut(s) 481, 620, 688, 931, 1060, 1068
MlyI GAGTC 3 cut(s) 83, 854, 965
MmeI TCCRAC 1 cut(s) 174
MroXI GAANNNNTTC 4 cut(s) 38, 620, 688, 1176
MseI TTAA 2 cut(s) 504, 870
MslI CAYNNNNRTG 3 cut(s) 705, 819, 1052
MspA1I CMGCKG 2 cut(s) 291, 469
MspI CCGG 2 cut(s) 212, 1040
MspR9I CCNGG 4 cut(s) 175, 212, 213, 566
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 2 cut(s) 175, 566
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 144, 438, 1082
NciI CCSGG 2 cut(s) 212, 213
NdeI CATATG 1 cut(s) 702
NdeII GATC 5 cut(s) 243, 394, 640, 724, 957
NlaIII CATG 3 cut(s) 305, 401, 1230
NlaIV GGNNCC 4 cut(s) 172, 210, 217, 1038
NmuCI GTSAC 2 cut(s) 789, 968
OliI CACNNNNGTG 1 cut(s) 1052
PagI TCATGA 2 cut(s) 301, 397
PaqCI CACCTGC 1 cut(s) 766
PciSI GCTCTTC 1 cut(s) 705
PctI GAATGC 1 cut(s) 830
PdmI GAANNNNTTC 4 cut(s) 38, 620, 688, 1176
PfeI GAWTC 2 cut(s) 598, 740
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 5 cut(s) 290, 440, 949, 1078, 1139
PleI GAGTC 3 cut(s) 82, 854, 965
PpsI GAGTC 3 cut(s) 82, 854, 965
PpuMI RGGWCCY 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 173, 564
PspFI CCCAGC 1 cut(s) 291
PspGI CCWGG 2 cut(s) 173, 564
PspN4I GGNNCC 4 cut(s) 172, 210, 217, 1038
PspPI GGNCC 3 cut(s) 171, 208, 657
PspPPI RGGWCCY 1 cut(s) 171
PstI CTGCAG 3 cut(s) 443, 952, 1150
PstNI CAGNNNCTG 1 cut(s) 1126
PsuI RGATCY 1 cut(s) 243
PvuII CAGCTG 2 cut(s) 291, 469
RsaI GTAC 6 cut(s) 101, 128, 142, 377, 541, 754
RsaNI GTAC 6 cut(s) 100, 127, 141, 376, 540, 753
RseI CAYNNNNRTG 3 cut(s) 705, 819, 1052
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 2 cut(s) 504, 870
SatI GCNGC 5 cut(s) 289, 439, 948, 1077, 1138
Sau3AI GATC 5 cut(s) 243, 394, 640, 724, 957
Sau96I GGNCC 3 cut(s) 171, 208, 657
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 3 cut(s) 83, 854, 965
ScrFI CCNGG 4 cut(s) 175, 212, 213, 566
SduI GDGCHC 1 cut(s) 218
SfaNI GCATC 2 cut(s) 397, 784
SfcI CTRYAG 4 cut(s) 159, 439, 948, 1146
SinI GGWCC 2 cut(s) 171, 657
SmaI CCCGGG 1 cut(s) 213
SmiMI CAYNNNNRTG 3 cut(s) 705, 819, 1052
SpeI ACTAGT 1 cut(s) 910
Sse9I AATT 6 cut(s) 481, 620, 688, 931, 1060, 1068
SsiI CCGC 4 cut(s) 113, 432, 537, 1076
SspI AATATT 1 cut(s) 886
SspMI CTAG 2 cut(s) 911, 962
StyD4I CCNGG 4 cut(s) 173, 210, 211, 564
StyI CCWWGG 1 cut(s) 625
TaiI ACGT 2 cut(s) 195, 265
TaqI TCGA 1 cut(s) 424
TasI AATT 6 cut(s) 481, 620, 688, 931, 1060, 1068
TatI WGTACW 2 cut(s) 140, 375
TauI GCSGC 1 cut(s) 1079
TfiI GAWTC 2 cut(s) 598, 740
Tru1I TTAA 2 cut(s) 504, 870
Tru9I TTAA 2 cut(s) 504, 870
TscAI CASTG 3 cut(s) 517, 1155, 1201
TseFI GTSAC 2 cut(s) 789, 968
TseI GCWGC 4 cut(s) 288, 438, 947, 1137
Tsp45I GTSAC 2 cut(s) 789, 968
TspMI CCCGGG 1 cut(s) 211
TspRI CASTG 3 cut(s) 517, 1155, 1201
VpaK11BI GGWCC 2 cut(s) 171, 657
XapI RAATTY 3 cut(s) 481, 620, 1068
XmaI CCCGGG 1 cut(s) 211
XmnI GAANNNNTTC 4 cut(s) 38, 620, 688, 1176
XspI CTAG 2 cut(s) 911, 962
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.