Rw1G011190
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000639
Physical Location & Seq
Reverse (-)
25310683 .. 25312018
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011190.1

Sequence Viewer

Length: 1146 bp
ATGAGCTGCGACCATTTCCCAGTGGAATTCCGATTCCGTCCCACCAAAACGGAGCTGCTGTGTGACCACTTGGCGAAGAAGAATTGGTGCAAGGACTCCCAAATCATGTCGATCATCCCTGACATCGATCCTTGCAAGCACGAGCCTCGTGAGCTACCAGGACTGGCGTTCACAAGGCAGGAAAATCTGGGAAGGAAACTTTACTCCGATTTCTTCTTTCGGTTTACAAGGGCAGAGTCTTGGTATAGTCAGGGCAAGTGGTACTTCTTCGCACCGCGTGAATACAAGTACCCTAACAGCACTCGCTCCAACAGGACTACAGGGGAGGGGTCCTGGAAGGTCACGGGCAAGGACCGCGACATCAAGGCCCCGGGCTCCGAAGCTGTGATTGGGAGGAAGAGGATCTTGACCTTCCAAAAACGTGGAGTGCCGAAATCCCACAAGACCGGCTATGTTATTCATGAGTATTATCACATTCAGCCCCATTCTGACCCTCCTCAGCAGATAGGGGACTTTGTTGTCTGTTGCTTGAAGTACAAGCCTGTCTCTGATCATGATGAGGATGCTCCATTCTGCAATCGAGGTAGCGGTAGCGGTAGCGGTAGCTGCAGTATGGTTTCCAATGTTGCAAATCAGGCTGAAGAAAATTTGGCGTCTAATGAGCAGTTTAATGGCACTGATGATGAAGCTGAAACTGGTGGCGGTTGGATTACTGAAGCAGAAGAACACCTGGCATATAAGAGAGATGGTCTTCGGACTGCCATTGGAAATCAGAATGAATTCCAAGGCTCGCAGACTGATCCTTGTAATCTTTGGACCTCTGTTGAAGGTCAAGCTGATAGAAGCAATTCGTCTCATATGATTGAAAAGCGACTAGATGATCCAGAAAATATGGATTCATTCTTTCATCCACCTGTGCCCCCTCAACTGCATCAGCTACATCAGTCACCGATGTATACCACCAATGTCCAGAATGATGAATGCCGTAAGAGGAAATATCCATTTGAAGATAATGACTCTTCTCTTACGAAGAAGAACAATATTTCAACCAATGATGGTGATGAACTAGTCAGCAACACCACTGCTAATTCTGAAAACCAAGCTGCAGATGTGATCCTAGAGGTGAGAATATGCATGCTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

381

Amino Acids

43.43

Weight (kDa)

5.75

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 156 2.7e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
AccI GTMKAC 1 cut(s) 956
AccII CGCG 2 cut(s) 277, 357
AciI CCGC 6 cut(s) 275, 355, 588, 594, 600, 702
AclWI GGATC 5 cut(s) 122, 410, 794, 875, 1108
AcsI RAATTY 3 cut(s) 26, 646, 779
AcuI CTGAAG 2 cut(s) 660, 735
AcyI GRCGYC 1 cut(s) 653
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 3 cut(s) 263, 290, 536
AgsI TTSAA 5 cut(s) 532, 827, 866, 1007, 1047
AhlI ACTAGT 1 cut(s) 1066
AjnI CCWGG 3 cut(s) 157, 332, 729
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 9 cut(s) 6, 55, 154, 383, 606, 689, 836, 937, 1103
AluI AGCT 9 cut(s) 6, 55, 154, 383, 606, 689, 836, 937, 1103
Alw26I GTCTC 2 cut(s) 550, 858
AlwI GGATC 5 cut(s) 122, 410, 794, 875, 1108
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 4 cut(s) 6, 55, 606, 1103
ApoI RAATTY 3 cut(s) 26, 646, 779
Asp700I GAANNNNTTC 2 cut(s) 779, 847
AspS9I GGNCC 4 cut(s) 330, 352, 367, 816
AsuC2I CCSGG 2 cut(s) 371, 372
AsuHPI GGTGA 3 cut(s) 939, 1070, 1135
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 3 cut(s) 330, 352, 816
BaeGI GKGCMC 1 cut(s) 921
BanII GRGCYC 1 cut(s) 377
BauI CACGAG 2 cut(s) 140, 147
BbsI GAAGAC 1 cut(s) 743
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 3 cut(s) 42, 593, 1090
BccI CCATC 2 cut(s) 740, 1049
BceAI ACGGC 1 cut(s) 969
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 3 cut(s) 159, 334, 731
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 2 cut(s) 371, 372
BcoDI GTCTC 2 cut(s) 550, 858
BcuI ACTAGT 1 cut(s) 1066
BfaI CTAG 3 cut(s) 875, 1067, 1118
BfmI CTRYAG 3 cut(s) 318, 607, 1104
BisI GCNGC 4 cut(s) 7, 56, 607, 1104
BlsI GCNGC 4 cut(s) 8, 57, 608, 1105
Bme1390I CCNGG 5 cut(s) 159, 334, 371, 372, 731
Bme18I GGWCC 3 cut(s) 330, 352, 816
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 4 cut(s) 330, 352, 367, 816
BmiI GGNNCC 3 cut(s) 331, 369, 376
BmrFI CCNGG 5 cut(s) 159, 334, 371, 372, 731
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 2 cut(s) 553, 940
BmuI ACTGGG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 498
BpuMI CCSGG 2 cut(s) 371, 372
Bsa29I ATCGAT 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 369, 370, 784
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 3 cut(s) 20, 168, 700
BseBI CCWGG 3 cut(s) 159, 334, 731
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 369, 370, 784
BseGI GGATG 3 cut(s) 114, 568, 907
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 3 cut(s) 20, 168, 700
BseRI GAGGAG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 921
BseXI GCAGC 3 cut(s) 42, 593, 1090
Bsh1236I CGCG 2 cut(s) 277, 357
BshFI GGCC 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 2 cut(s) 371, 447
BslFI GGGAC 2 cut(s) 24, 524
BsmAI GTCTC 2 cut(s) 550, 858
BsmBI CGTCTC 1 cut(s) 858
BsmFI GGGAC 2 cut(s) 24, 524
BsmI GAATGC 1 cut(s) 986
BsnI GGCC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 2 cut(s) 377, 921
Bsp143I GATC 7 cut(s) 111, 127, 402, 550, 799, 880, 1113
BspACI CCGC 6 cut(s) 275, 355, 588, 594, 600, 702
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 511
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 2 cut(s) 277, 357
BspHI TCATGA 2 cut(s) 460, 553
BspLI GGNNCC 3 cut(s) 331, 369, 376
BspMAI CTGCAG 2 cut(s) 611, 1108
BspPI GGATC 5 cut(s) 122, 410, 794, 875, 1108
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 3 cut(s) 20, 168, 700
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 3 cut(s) 369, 370, 784
BssMI GATC 7 cut(s) 111, 127, 402, 550, 799, 880, 1113
BssNAI GTATAC 1 cut(s) 957
BssNI GRCGYC 1 cut(s) 653
BssSI CACGAG 2 cut(s) 140, 147
BssT1I CCWWGG 1 cut(s) 784
Bst1107I GTATAC 1 cut(s) 957
Bst2BI CACGAG 2 cut(s) 140, 147
Bst2UI CCWGG 3 cut(s) 159, 334, 731
Bst6I CTCTTC 2 cut(s) 392, 1024
BstACI GRCGYC 1 cut(s) 653
BstC8I GCNNGC 3 cut(s) 137, 791, 1136
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 3 cut(s) 114, 568, 907
BstFNI CGCG 2 cut(s) 277, 357
BstKTI GATC 7 cut(s) 114, 130, 405, 553, 802, 883, 1116
BstMAI GTCTC 2 cut(s) 550, 858
BstMBI GATC 7 cut(s) 111, 127, 402, 550, 799, 880, 1113
BstMWI GCNNNNNNNGC 4 cut(s) 151, 354, 606, 635
BstNI CCWGG 3 cut(s) 159, 334, 731
BstNSI RCATGY 1 cut(s) 1138
BstSCI CCNGG 5 cut(s) 157, 332, 369, 370, 729
BstSFI CTRYAG 3 cut(s) 318, 607, 1104
BstSLI GKGCMC 1 cut(s) 921
BstUI CGCG 2 cut(s) 277, 357
BstV1I GCAGC 3 cut(s) 42, 593, 1090
BstV2I GAAGAC 1 cut(s) 743
BstX2I RGATCY 1 cut(s) 402
BstXI CCANNNNNNTGG 1 cut(s) 422
BstYI RGATCY 1 cut(s) 402
BstZ17I GTATAC 1 cut(s) 957
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 1 cut(s) 368
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 3 cut(s) 114, 568, 907
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 3 cut(s) 27, 675, 1080
Cac8I GCNNGC 3 cut(s) 137, 791, 1136
CciI TCATGA 2 cut(s) 460, 553
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 4 cut(s) 330, 352, 367, 816
Cfr9I CCCGGG 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 1 cut(s) 642
Csp6I GTAC 3 cut(s) 262, 289, 535
CviAII CATG 4 cut(s) 106, 461, 554, 1135
CviQI GTAC 3 cut(s) 262, 289, 535
DdeI CTNAG 1 cut(s) 498
DpnI GATC 7 cut(s) 113, 129, 404, 552, 801, 882, 1115
DpnII GATC 7 cut(s) 111, 127, 402, 550, 799, 880, 1113
DraIII CACNNNGTG 1 cut(s) 278
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
Eam1104I CTCTTC 2 cut(s) 392, 1024
EarI CTCTTC 2 cut(s) 392, 1024
Eco130I CCWWGG 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 3 cut(s) 330, 352, 816
Eco57I CTGAAG 2 cut(s) 660, 735
Eco88I CYCGRG 1 cut(s) 370
EcoO109I RGGNCCY 2 cut(s) 330, 367
EcoRI GAATTC 2 cut(s) 26, 779
EcoRII CCWGG 3 cut(s) 157, 332, 729
EcoT14I CCWWGG 1 cut(s) 784
EcoT22I ATGCAT 1 cut(s) 1136
EcoT38I GRGCYC 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 784
Esp3I CGTCTC 1 cut(s) 858
FaeI CATG 4 cut(s) 109, 464, 557, 1138
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 389, 421
FaqI GGGAC 2 cut(s) 24, 524
FatI CATG 4 cut(s) 105, 460, 553, 1134
FauNDI CATATG 1 cut(s) 858
FbaI TGATCA 1 cut(s) 550
FblI GTMKAC 1 cut(s) 956
Fnu4HI GCNGC 4 cut(s) 7, 56, 607, 1104
FokI GGATG 3 cut(s) 101, 575, 894
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 4 cut(s) 7, 56, 607, 1104
FspBI CTAG 3 cut(s) 875, 1067, 1118
GluI GCNGC 4 cut(s) 7, 56, 607, 1104
HaeIII GGCC 1 cut(s) 368
HapII CCGG 2 cut(s) 371, 447
HgaI GACGC 1 cut(s) 642
Hin1I GRCGYC 1 cut(s) 653
Hin1II CATG 4 cut(s) 109, 464, 557, 1138
HinfI GANTC 5 cut(s) 33, 95, 236, 896, 1016
HpaII CCGG 2 cut(s) 371, 447
HphI GGTGA 3 cut(s) 939, 1070, 1135
Hpy166II GTNNAC 3 cut(s) 171, 225, 957
Hpy188I TCNGA 8 cut(s) 32, 208, 379, 490, 550, 756, 774, 1093
Hpy188III TCNNGA 6 cut(s) 149, 406, 461, 554, 884, 970
Hpy8I GTNNAC 3 cut(s) 171, 225, 957
HpyAV CCTTC 4 cut(s) 186, 331, 421, 821
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 8 cut(s) 90, 135, 576, 609, 629, 931, 1106, 1134
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 354, 606, 635
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 421
Hsp92I GRCGYC 1 cut(s) 653
Hsp92II CATG 4 cut(s) 109, 464, 557, 1138
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 7 cut(s) 111, 127, 402, 550, 799, 880, 1113
LmnI GCTCC 4 cut(s) 52, 311, 380, 571
Lsp1109I GCAGC 3 cut(s) 42, 593, 1090
LweI GCATC 2 cut(s) 553, 940
MaeI CTAG 3 cut(s) 875, 1067, 1118
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 3 cut(s) 62, 340, 945
MalI GATC 7 cut(s) 113, 129, 404, 552, 801, 882, 1115
MboI GATC 7 cut(s) 111, 127, 402, 550, 799, 880, 1113
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 2 cut(s) 377, 921
MluCI AATT 6 cut(s) 26, 82, 646, 779, 847, 1087
MlyI GAGTC 3 cut(s) 89, 245, 1010
MmeI TCCRAC 2 cut(s) 333, 686
Mph1103I ATGCAT 1 cut(s) 1136
MroXI GAANNNNTTC 2 cut(s) 779, 847
MseI TTAA 2 cut(s) 669, 1144
MspI CCGG 2 cut(s) 371, 447
MspR9I CCNGG 5 cut(s) 159, 334, 371, 372, 731
Mva1269I GAATGC 1 cut(s) 986
MvaI CCWGG 3 cut(s) 159, 334, 731
MvnI CGCG 2 cut(s) 277, 357
MwoI GCNNNNNNNGC 4 cut(s) 151, 354, 606, 635
NciI CCSGG 2 cut(s) 371, 372
NdeI CATATG 1 cut(s) 858
NdeII GATC 7 cut(s) 111, 127, 402, 550, 799, 880, 1113
NlaIII CATG 4 cut(s) 109, 464, 557, 1138
NlaIV GGNNCC 3 cut(s) 331, 369, 376
NmuCI GTSAC 3 cut(s) 62, 340, 945
NsiI ATGCAT 1 cut(s) 1136
NspI RCATGY 1 cut(s) 1138
PaeI GCATGC 1 cut(s) 1138
PagI TCATGA 2 cut(s) 460, 553
PctI GAATGC 1 cut(s) 986
PdmI GAANNNNTTC 2 cut(s) 779, 847
PfeI GAWTC 2 cut(s) 33, 896
PfoI TCCNGGA 1 cut(s) 332
PkrI GCNGC 4 cut(s) 8, 57, 608, 1105
PleI GAGTC 3 cut(s) 89, 244, 1010
PpsI GAGTC 3 cut(s) 89, 244, 1010
PpuMI RGGWCCY 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 330
Psp6I CCWGG 3 cut(s) 157, 332, 729
PspGI CCWGG 3 cut(s) 157, 332, 729
PspN4I GGNNCC 3 cut(s) 331, 369, 376
PspPI GGNCC 4 cut(s) 330, 352, 367, 816
PspPPI RGGWCCY 1 cut(s) 330
PstI CTGCAG 2 cut(s) 611, 1108
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 3 cut(s) 263, 290, 536
RsaNI GTAC 3 cut(s) 262, 289, 535
SaqAI TTAA 2 cut(s) 669, 1144
SatI GCNGC 4 cut(s) 7, 56, 607, 1104
Sau3AI GATC 7 cut(s) 111, 127, 402, 550, 799, 880, 1113
Sau96I GGNCC 4 cut(s) 330, 352, 367, 816
SchI GAGTC 3 cut(s) 89, 245, 1010
ScrFI CCNGG 5 cut(s) 159, 334, 371, 372, 731
SduI GDGCHC 2 cut(s) 377, 921
SfaNI GCATC 2 cut(s) 553, 940
SfcI CTRYAG 3 cut(s) 318, 607, 1104
SinI GGWCC 3 cut(s) 330, 352, 816
SmaI CCCGGG 1 cut(s) 372
SpeI ACTAGT 1 cut(s) 1066
SphI GCATGC 1 cut(s) 1138
Sse9I AATT 6 cut(s) 26, 82, 646, 779, 847, 1087
SsiI CCGC 6 cut(s) 275, 355, 588, 594, 600, 702
SspI AATATT 1 cut(s) 1042
SspMI CTAG 3 cut(s) 875, 1067, 1118
StyD4I CCNGG 5 cut(s) 157, 332, 369, 370, 729
StyI CCWWGG 1 cut(s) 784
TaiI ACGT 1 cut(s) 424
TaqI TCGA 3 cut(s) 110, 126, 580
TasI AATT 6 cut(s) 26, 82, 646, 779, 847, 1087
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 2 cut(s) 33, 896
Tru1I TTAA 2 cut(s) 669, 1144
Tru9I TTAA 2 cut(s) 669, 1144
TscAI CASTG 3 cut(s) 27, 682, 1087
TseFI GTSAC 3 cut(s) 62, 340, 945
TseI GCWGC 4 cut(s) 6, 55, 606, 1103
Tsp45I GTSAC 3 cut(s) 62, 340, 945
TspDTI ATGAA 7 cut(s) 449, 699, 792, 888, 896, 993, 1077
TspGWI ACGGA 2 cut(s) 26, 65
TspMI CCCGGG 1 cut(s) 370
TspRI CASTG 3 cut(s) 27, 682, 1087
VpaK11BI GGWCC 3 cut(s) 330, 352, 816
XapI RAATTY 3 cut(s) 26, 646, 779
XceI RCATGY 1 cut(s) 1138
XmaI CCCGGG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 956
XmnI GAANNNNTTC 2 cut(s) 779, 847
XspI CTAG 3 cut(s) 875, 1067, 1118
Zsp2I ATGCAT 1 cut(s) 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.