Rh1AG300500
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000639
Physical Location & Seq
Reverse (-)
53275533 .. 53277688
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG300500.1

Sequence Viewer

Length: 1455 bp
ATGAGCTGCGGCGACTTCATAGTTCCGCCGGGATACCGATTCCATCCCACCGACGAGAGGCTGCTTAGTGACTTGGAGGAGAAGAACCGGTGCAAGGACTCCGAGACTCCCACCATCATCCCTGTTATCGAGATGTGCAGGCACGAGCCTCACGAGTTACCAGAACTGGCATTCACAAGGGCGCAAAATCTAGGCAGGAAGTTTTTCTCCTTTTTCTTCTTCTGCTTTGCATGGGCAGAGTCTTGGGACAGTCAGGGCAAGTGGTACTTCTTCACTCCGCGTGAATACAAGTACCCTAACAGCAAACGCTCCAACAGGACTACAGGGGAAGGGTTCTGGAAGATCACAGGCAAGGACCGCGACATCAAGGCCCCTGGCTCCAAAGCTGTGATTGGGAGAAAGAGGACCTTAACCTTCTACAAACGTGGAGTGCCGAAATCCCAGAGGACTGGTTGGGTCATTCATGAGTATTATCTCATTGAGGCACATTCTGATCCTCCTAAACAGATCGGGGACTTTGTTGTCTGTTGCTTGAAGTATAAGTCAAACAACCCTGATCATGATAAGGATGCCCCATTCTTCGATCAAGGTAGCACTAGCTGCAGTATGGCCTCCAATGTTGAAAATCAAGCTGAAGAAAATTGGTCATCCATTGAGCAGGTTAATGTTGTTCCAATTCCCAATGGAAATGGTGATGAAGCTGAAACTGGTGGTGGTATGATTACAGAAGAAGAGGAATACCTGGCTTTAAAGGAGCTGGAAAATGCTCTTCAGAGTCCTATTGGCAATCCTCATGAATTCCAAGGCACGCAAACTGATCCTTATCATATAGATAAGAATGATCTTTCGACCTCTGTTGAAGGCCGACCTTTAAAGAGCAATTTGTCTGATATGATTGAAGAGCTACTAGATGACCCAGAAAATCTGGATTCACTCTTTGATACGCCTGCGCCACCTCAACTGCATCAGCCACCAATGTATACCACCAATGACCATAATGATGAATGTCGTAAGAGGGCATATCCATTTGAGGACAATGAACCTTCTCTTGTGAAGAAGAAGAATATTTCAACCAATGACGATGACGAATTAGTTAGCAAGACCGCATCCAGTTGGGAAAATCAAGCTGCAAATATCAATATGATTCAAGAGAGATATTCTCAACAAGGAGCAAATCTGGGATCAGACTTTGATTCATTTCTGCCGAAGGATTACGATTATACACTACCATCAATAAACGGAGGACCGGGAGATTTTCCCCATGACAATAATTTTATTGAGTGGGATGATTTGCCATCCTTATACGAAGGTATGGACTATTCTCCCGCAAAGTTCTCACATACAGTTATTGATGGTGGTAAAGGAGTAACCAGTGACGGAAACACCGAAGTAGTAGATGGATCGGTAAACGATTATTCTGCATTAGCCACTGGAGCAACGCTCCAATGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

484

Amino Acids

54.62

Weight (kDa)

4.67

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 158 2.9e-28 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 649
AccI GTMKAC 1 cut(s) 980
AccII CGCG 2 cut(s) 280, 360
AciI CCGC 6 cut(s) 9, 26, 278, 358, 1104, 1326
AclWI GGATC 4 cut(s) 488, 812, 1189, 1408
AcsI RAATTY 1 cut(s) 797
AcuI CTGAAG 2 cut(s) 654, 755
AfaI GTAC 2 cut(s) 266, 293
AfiI CCNNNNNNNGG 2 cut(s) 57, 94
AgeI ACCGGT 1 cut(s) 87
AgsI TTSAA 6 cut(s) 535, 623, 860, 899, 1071, 1148
AjnI CCWGG 2 cut(s) 373, 741
AluBI AGCT 9 cut(s) 6, 386, 600, 632, 701, 757, 904, 1127, 1452
AluI AGCT 9 cut(s) 6, 386, 600, 632, 701, 757, 904, 1127, 1452
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 4 cut(s) 488, 812, 1189, 1408
AoxI GGCC 3 cut(s) 369, 609, 862
ApeKI GCWGC 4 cut(s) 6, 61, 600, 1127
ApoI RAATTY 1 cut(s) 797
AsiGI ACCGGT 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 184, 952
AspS9I GGNCC 4 cut(s) 355, 370, 405, 1244
AsuC2I CCSGG 2 cut(s) 30, 1248
AsuHPI GGTGA 1 cut(s) 704
AvaII GGWCC 3 cut(s) 355, 405, 1244
BauI CACGAG 2 cut(s) 143, 152
BbvI GCAGC 3 cut(s) 48, 587, 1114
BccI CCATC 6 cut(s) 51, 122, 1237, 1303, 1346, 1391
BcgI CGANNNNNNTGC 2 cut(s) 1400, 1434
BciT130I CCWGG 2 cut(s) 375, 743
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 2 cut(s) 30, 1248
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 3 cut(s) 191, 597, 908
BfmI CTRYAG 2 cut(s) 321, 601
BfuAI ACCTGC 1 cut(s) 649
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
BlsI GCNGC 5 cut(s) 8, 11, 63, 602, 1129
Bme1390I CCNGG 4 cut(s) 30, 375, 743, 1248
Bme18I GGWCC 3 cut(s) 355, 405, 1244
BmgT120I GGNCC 4 cut(s) 355, 370, 405, 1244
BmiI GGNNCC 2 cut(s) 372, 379
BmrFI CCNGG 4 cut(s) 30, 375, 743, 1248
BmsI GCATC 3 cut(s) 559, 973, 1115
BplI GAGNNNNNCTC 3 cut(s) 1144, 1176, 1425
BpmI CTGGAG 1 cut(s) 1452
BpuMI CCSGG 2 cut(s) 30, 1248
BsaBI GATNNNNATC 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 373, 802
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 94
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 6 cut(s) 171, 454, 712, 1110, 1371, 1435
Bse8I GATNNNNATC 1 cut(s) 822
BseBI CCWGG 2 cut(s) 375, 743
BseDI CCNNGG 2 cut(s) 373, 802
BseGI GGATG 7 cut(s) 43, 117, 574, 647, 1106, 1291, 1295
BseJI GATNNNNATC 1 cut(s) 822
BseLI CCNNNNNNNGG 2 cut(s) 57, 94
BseNI ACTGG 6 cut(s) 171, 454, 712, 1110, 1371, 1435
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 3 cut(s) 48, 587, 1114
BsgI GTGCAG 1 cut(s) 157
Bsh1236I CGCG 2 cut(s) 280, 360
BshFI GGCC 3 cut(s) 371, 611, 864
BshTI ACCGGT 1 cut(s) 87
BsiSI CCGG 3 cut(s) 29, 88, 1247
BslFI GGGAC 2 cut(s) 260, 527
BslI CCNNNNNNNGG 2 cut(s) 57, 94
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 260, 527
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 3 cut(s) 371, 611, 864
Bsp143I GATC 9 cut(s) 342, 493, 507, 556, 583, 817, 841, 1181, 1400
BspACI CCGC 6 cut(s) 9, 26, 278, 358, 1104, 1326
BspANI GGCC 3 cut(s) 371, 611, 864
BspFNI CGCG 2 cut(s) 280, 360
BspHI TCATGA 3 cut(s) 463, 559, 793
BspLI GGNNCC 2 cut(s) 372, 379
BspMAI CTGCAG 1 cut(s) 605
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 4 cut(s) 488, 812, 1189, 1408
BspQI GCTCTTC 2 cut(s) 774, 894
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 6 cut(s) 171, 454, 712, 1110, 1371, 1435
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 373, 802
BssMI GATC 9 cut(s) 342, 493, 507, 556, 583, 817, 841, 1181, 1400
BssNAI GTATAC 1 cut(s) 981
BssSI CACGAG 2 cut(s) 143, 152
BssT1I CCWWGG 1 cut(s) 802
Bst1107I GTATAC 1 cut(s) 981
Bst2BI CACGAG 2 cut(s) 143, 152
Bst2UI CCWGG 2 cut(s) 375, 743
Bst4CI ACNGT 2 cut(s) 251, 1345
Bst6I CTCTTC 3 cut(s) 726, 774, 894
BstAPI GCANNNNNTGC 1 cut(s) 600
BstC8I GCNNGC 3 cut(s) 140, 809, 948
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 7 cut(s) 43, 117, 574, 647, 1106, 1291, 1295
BstFNI CGCG 2 cut(s) 280, 360
BstHHI GCGC 2 cut(s) 184, 952
BstKTI GATC 9 cut(s) 345, 496, 510, 559, 586, 820, 844, 1184, 1403
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 9 cut(s) 342, 493, 507, 556, 583, 817, 841, 1181, 1400
BstMWI GCNNNNNNNGC 3 cut(s) 357, 600, 1433
BstNI CCWGG 2 cut(s) 375, 743
BstSCI CCNGG 4 cut(s) 28, 373, 741, 1246
BstSFI CTRYAG 2 cut(s) 321, 601
BstUI CGCG 2 cut(s) 280, 360
BstV1I GCAGC 3 cut(s) 48, 587, 1114
BstXI CCANNNNNNTGG 1 cut(s) 449
BstZ17I GTATAC 1 cut(s) 981
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 371, 611, 864
BtsCI GGATG 7 cut(s) 43, 117, 574, 647, 1106, 1291, 1295
BtsIMutI CAGTG 2 cut(s) 1378, 1428
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 3 cut(s) 140, 809, 948
CciI TCATGA 3 cut(s) 463, 559, 793
CfoI GCGC 2 cut(s) 184, 952
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 4 cut(s) 355, 370, 405, 1244
Csp6I GTAC 2 cut(s) 265, 292
CspAI ACCGGT 1 cut(s) 87
CviAII CATG 5 cut(s) 231, 464, 560, 794, 1262
CviQI GTAC 2 cut(s) 265, 292
DdeI CTNAG 1 cut(s) 65
DpnI GATC 9 cut(s) 344, 495, 509, 558, 585, 819, 843, 1183, 1402
DpnII GATC 9 cut(s) 342, 493, 507, 556, 583, 817, 841, 1181, 1400
DraI TTTAAA 2 cut(s) 750, 873
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
Eam1104I CTCTTC 3 cut(s) 726, 774, 894
EarI CTCTTC 3 cut(s) 726, 774, 894
EciI GGCGGA 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 802
Eco47I GGWCC 3 cut(s) 355, 405, 1244
Eco57I CTGAAG 2 cut(s) 654, 755
EcoO109I RGGNCCY 2 cut(s) 370, 405
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 2 cut(s) 373, 741
EcoT14I CCWWGG 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 802
FaeI CATG 5 cut(s) 234, 467, 563, 797, 1265
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 392, 424
FaqI GGGAC 2 cut(s) 260, 527
FatI CATG 5 cut(s) 230, 463, 559, 793, 1261
FauI CCCGC 1 cut(s) 1333
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 980
Fnu4HI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
FokI GGATG 7 cut(s) 30, 104, 581, 634, 1093, 1282, 1298
Fsp4HI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
FspBI CTAG 3 cut(s) 191, 597, 908
GlaI GCGC 2 cut(s) 183, 951
GluI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
GsuI CTGGAG 1 cut(s) 1452
HaeIII GGCC 3 cut(s) 371, 611, 864
HapII CCGG 3 cut(s) 29, 88, 1247
HhaI GCGC 2 cut(s) 184, 952
Hin1II CATG 5 cut(s) 234, 467, 563, 797, 1265
Hin6I GCGC 2 cut(s) 182, 950
HinP1I GCGC 2 cut(s) 182, 950
HinfI GANTC 8 cut(s) 39, 98, 106, 239, 775, 929, 1144, 1193
HpaII CCGG 3 cut(s) 29, 88, 1247
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 2 cut(s) 981, 1408
Hpy188I TCNGA 5 cut(s) 103, 493, 774, 889, 1186
Hpy188III TCNNGA 8 cut(s) 130, 152, 337, 464, 560, 794, 926, 1148
Hpy8I GTNNAC 2 cut(s) 981, 1408
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 6 cut(s) 323, 424, 854, 1053, 1201, 1301
HpyCH4III ACNGT 2 cut(s) 251, 1345
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 7 cut(s) 93, 138, 230, 603, 964, 1130, 1421
HpyF10VI GCNNNNNNNGC 3 cut(s) 357, 600, 1433
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 5 cut(s) 234, 467, 563, 797, 1265
HspAI GCGC 2 cut(s) 182, 950
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 9 cut(s) 342, 493, 507, 556, 583, 817, 841, 1181, 1400
LguI GCTCTTC 2 cut(s) 774, 894
LmnI GCTCC 6 cut(s) 314, 383, 754, 1169, 1433, 1446
Lsp1109I GCAGC 3 cut(s) 48, 587, 1114
LweI GCATC 3 cut(s) 559, 973, 1115
MaeI CTAG 3 cut(s) 191, 597, 908
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 4 cut(s) 68, 156, 1366, 1373
MalI GATC 9 cut(s) 344, 495, 509, 558, 585, 819, 843, 1183, 1402
MboI GATC 9 cut(s) 342, 493, 507, 556, 583, 817, 841, 1181, 1400
MluCI AATT 6 cut(s) 640, 675, 797, 880, 1088, 1270
MlyI GAGTC 4 cut(s) 92, 100, 248, 784
MmeI TCCRAC 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 4 cut(s) 410, 663, 749, 872
MslI CAYNNNNRTG 1 cut(s) 999
MspI CCGG 3 cut(s) 29, 88, 1247
MspR9I CCNGG 4 cut(s) 30, 375, 743, 1248
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 2 cut(s) 375, 743
MvnI CGCG 2 cut(s) 280, 360
MwoI GCNNNNNNNGC 3 cut(s) 357, 600, 1433
NciI CCSGG 2 cut(s) 30, 1248
NdeII GATC 9 cut(s) 342, 493, 507, 556, 583, 817, 841, 1181, 1400
NlaIII CATG 5 cut(s) 234, 467, 563, 797, 1265
NlaIV GGNNCC 2 cut(s) 372, 379
NmuCI GTSAC 2 cut(s) 68, 1373
PagI TCATGA 3 cut(s) 463, 559, 793
PciSI GCTCTTC 2 cut(s) 774, 894
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 1383
PctI GAATGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 4 cut(s) 39, 929, 1144, 1193
PinAI ACCGGT 1 cut(s) 87
PkrI GCNGC 5 cut(s) 8, 11, 63, 602, 1129
PleI GAGTC 4 cut(s) 92, 100, 247, 783
PpsI GAGTC 4 cut(s) 92, 100, 247, 783
PpuMI RGGWCCY 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 373, 741
PspGI CCWGG 2 cut(s) 373, 741
PspN4I GGNNCC 2 cut(s) 372, 379
PspPI GGNCC 4 cut(s) 355, 370, 405, 1244
PspPPI RGGWCCY 1 cut(s) 405
PstI CTGCAG 1 cut(s) 605
RsaI GTAC 2 cut(s) 266, 293
RsaNI GTAC 2 cut(s) 265, 292
RseI CAYNNNNRTG 1 cut(s) 999
SapI GCTCTTC 2 cut(s) 774, 894
SaqAI TTAA 4 cut(s) 410, 663, 749, 872
SatI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
Sau3AI GATC 9 cut(s) 342, 493, 507, 556, 583, 817, 841, 1181, 1400
Sau96I GGNCC 4 cut(s) 355, 370, 405, 1244
SchI GAGTC 4 cut(s) 92, 100, 248, 784
ScrFI CCNGG 4 cut(s) 30, 375, 743, 1248
SfaNI GCATC 3 cut(s) 559, 973, 1115
SfcI CTRYAG 2 cut(s) 321, 601
SinI GGWCC 3 cut(s) 355, 405, 1244
SmiMI CAYNNNNRTG 1 cut(s) 999
Sse9I AATT 6 cut(s) 640, 675, 797, 880, 1088, 1270
SsiI CCGC 6 cut(s) 9, 26, 278, 358, 1104, 1326
SspI AATATT 1 cut(s) 1066
SspMI CTAG 3 cut(s) 191, 597, 908
StyD4I CCNGG 4 cut(s) 28, 373, 741, 1246
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 2 cut(s) 251, 1345
TaiI ACGT 1 cut(s) 427
TaqI TCGA 3 cut(s) 129, 582, 848
TasI AATT 6 cut(s) 640, 675, 797, 880, 1088, 1270
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 4 cut(s) 39, 929, 1144, 1193
Tru1I TTAA 4 cut(s) 410, 663, 749, 872
Tru9I TTAA 4 cut(s) 410, 663, 749, 872
TscAI CASTG 2 cut(s) 1378, 1435
TseFI GTSAC 2 cut(s) 68, 1373
TseI GCWGC 4 cut(s) 6, 61, 600, 1127
Tsp45I GTSAC 2 cut(s) 68, 1373
TspDTI ATGAA 7 cut(s) 7, 452, 711, 810, 1017, 1053, 1185
TspGWI ACGGA 2 cut(s) 1254, 1392
TspRI CASTG 2 cut(s) 1378, 1435
VpaK11BI GGWCC 3 cut(s) 355, 405, 1244
XapI RAATTY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 980
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 3 cut(s) 191, 597, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.