Rh1AG300600
NAC Family

(NAC) domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
53280520 .. 53325598
45079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG300600.1

Sequence Viewer

Length: 1197 bp
ATGAGCTGCGAAATTTTCTCAATTCCACCGGAATACCGATTCCGTCCCACCAAAAAGGAGCTGCTGTGTGACCACTTGGAGAAGAAGAATCAGTGCAAGGACTCCCAAAGCATGTCCATCATCCCCGAAATCGATCTGTGCAAGCACGAGCCTCCTGAGCTACCAGGTGATCCATCTCCGGAACCAGAACACCATCAATTTCAATTATTATTCGTGATCCAGTCATGTGTATTGTGTTGCGTTTTTGCAGGACTGGCGTTCATAGGGCAGGAAAATCTGGGGAGGAAACTTTTCTTCTTTTTCTTCTTTTGGTTTACAAGGGCAGAGTCTTGGGATAGTCAGGGCAAGTGGTACTTCTTCGCTCCGCGTGATTACAAGTACGCTAACAGCACTCGCTCCAACAGGACTACAGGGGAAGGGTTCTGGAAGCCCACAGGCAAGGTCCGCGACATCAAGGCCCCGGGCTCCAAAGCTGTGATTGGCAGAAAGAGGATCTTAACCTTCCAAAAACATGGAGAGCTGAAACCCCAGAAGACCGGCTGGGTCATTCATGAGTATTATCTCATTGAGGCACAATCTGATCGCCCTAAGCAGATAGGGGACTTTGTTGTATGTTGCTTGAAGTACAAGTCAGACAACTCTGATCATGATGAGGATGCTCCATTCTGCAATCCAGGTAGCGGTAGCTGCAGTATGGCCTCCAGTGTTGCAAACCAGGCTGAAGAAAATTTGGCATCCAATGAGCAGTTTAATGGCACTGATTATGAAGCTGAAACTGGTGGCGGTAGGATTACTGAAGCAGAAGAACACCTGGCATATAAGAAGCTGAGAGATGAGCTTCGGATTCCCATTGGAAATCAGAATGAATTCGAAGGCTCGCAAACTGATCCTTGTAATCTTTGGACCTCTGTTGAAGGTCAAGCTGATAGAAGCAATTCGTCTCATATGATTGAAGAGCGACTAAATGATCCAGAAATGCATGAGCAACATCAGTCACCGATGTATACCACCAATGTCCAGAATGATGGATGCCGTAAGAGGAAATATCCATTTGAAGATAATGACTCTTCTCTTGCGAATAAGAAGAACAATATTTCAACCAATGATGGTGATGAACTAGTCTACAACACCACTTCTAATTCTGAAAACCAAACTGCAGATGTGATCCTAGAGGTGAGAATATGCACTCTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

398

Amino Acids

45.49

Weight (kDa)

5.29

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 58 1.2e-08 No apical meristem (NAM) protein
NAM PF02365 113 - 187 1e-18 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1004, 1122
AccII CGCG 2 cut(s) 367, 447
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 4 cut(s) 365, 445, 681, 783
AclWI GGATC 6 cut(s) 164, 211, 500, 881, 962, 1159
AcsI RAATTY 3 cut(s) 12, 727, 866
AcuI CTGAAG 2 cut(s) 741, 816
AfaI GTAC 3 cut(s) 353, 380, 626
AfiI CCNNNNNNNGG 1 cut(s) 680
AgsI TTSAA 6 cut(s) 203, 622, 914, 953, 1055, 1098
AhlI ACTAGT 1 cut(s) 1117
AjnI CCWGG 4 cut(s) 163, 673, 714, 810
Alw26I GTCTC 1 cut(s) 945
AlwI GGATC 6 cut(s) 164, 211, 500, 881, 962, 1159
Ama87I CYCGRG 1 cut(s) 460
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 2 cut(s) 456, 696
ApeKI GCWGC 3 cut(s) 6, 61, 687
ApoI RAATTY 3 cut(s) 12, 727, 866
Asp700I GAANNNNTTC 3 cut(s) 290, 866, 934
AspS9I GGNCC 3 cut(s) 442, 457, 903
AsuC2I CCSGG 2 cut(s) 461, 462
AsuHPI GGTGA 4 cut(s) 179, 987, 1121, 1186
AsuII TTCGAA 1 cut(s) 870
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 2 cut(s) 442, 903
BanII GRGCYC 1 cut(s) 467
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 48, 674
BccI CCATC 5 cut(s) 125, 181, 201, 1019, 1100
BceAI ACGGC 1 cut(s) 1017
BciT130I CCWGG 4 cut(s) 165, 675, 716, 812
BclI TGATCA 1 cut(s) 643
BcnI CCSGG 2 cut(s) 461, 462
BcoDI GTCTC 1 cut(s) 945
BcuI ACTAGT 1 cut(s) 1117
BfaI CTAG 2 cut(s) 1118, 1169
BfmI CTRYAG 3 cut(s) 408, 688, 1155
BisI GCNGC 3 cut(s) 7, 62, 688
BlsI GCNGC 3 cut(s) 8, 63, 689
Bme1390I CCNGG 6 cut(s) 165, 461, 462, 675, 716, 812
Bme18I GGWCC 2 cut(s) 442, 903
BmeT110I CYCGRG 1 cut(s) 460
BmgT120I GGNCC 3 cut(s) 442, 457, 903
BmiI GGNNCC 3 cut(s) 183, 459, 466
BmrFI CCNGG 6 cut(s) 165, 461, 462, 675, 716, 812
BmsI GCATC 3 cut(s) 646, 743, 1019
BpiI GAAGAC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 685
Bpu10I CCTNAGC 2 cut(s) 156, 588
Bpu14I TTCGAA 1 cut(s) 870
BpuMI CCSGG 2 cut(s) 461, 462
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 459, 460
BsaWI WCCGGW 2 cut(s) 28, 178
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 4 cut(s) 220, 258, 702, 781
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 4 cut(s) 165, 675, 716, 812
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 459, 460
BseGI GGATG 4 cut(s) 120, 661, 734, 1034
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMII CTCAG 2 cut(s) 147, 818
BseNI ACTGG 4 cut(s) 220, 258, 702, 781
BseXI GCAGC 2 cut(s) 48, 674
BseYI CCCAGC 1 cut(s) 540
Bsh1236I CGCG 2 cut(s) 367, 447
BshFI GGCC 2 cut(s) 458, 698
BshVI ATCGAT 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 4 cut(s) 29, 179, 461, 537
BslFI GGGAC 2 cut(s) 30, 614
BslI CCNNNNNNNGG 1 cut(s) 680
BsmAI GTCTC 1 cut(s) 945
BsmBI CGTCTC 1 cut(s) 945
BsmFI GGGAC 2 cut(s) 30, 614
BsnI GGCC 2 cut(s) 458, 698
BsoBI CYCGRG 1 cut(s) 460
Bsp119I TTCGAA 1 cut(s) 870
Bsp1286I GDGCHC 1 cut(s) 467
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 9 cut(s) 133, 169, 216, 492, 580, 643, 886, 967, 1164
BspACI CCGC 4 cut(s) 365, 445, 681, 783
BspANI GGCC 2 cut(s) 458, 698
BspCNI CTCAG 2 cut(s) 148, 819
BspDI ATCGAT 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 178
BspFNI CGCG 2 cut(s) 367, 447
BspHI TCATGA 2 cut(s) 550, 646
BspLI GGNNCC 3 cut(s) 183, 459, 466
BspMAI CTGCAG 2 cut(s) 692, 1159
BspPI GGATC 6 cut(s) 164, 211, 500, 881, 962, 1159
BspQI GCTCTTC 1 cut(s) 948
BspT104I TTCGAA 1 cut(s) 870
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 4 cut(s) 220, 258, 702, 781
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 2 cut(s) 459, 460
BssMI GATC 9 cut(s) 133, 169, 216, 492, 580, 643, 886, 967, 1164
BssNAI GTATAC 1 cut(s) 1005
BssSI CACGAG 1 cut(s) 146
Bst1107I GTATAC 1 cut(s) 1005
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 4 cut(s) 165, 675, 716, 812
Bst6I CTCTTC 2 cut(s) 948, 1072
BstBI TTCGAA 1 cut(s) 870
BstC8I GCNNGC 2 cut(s) 143, 878
BstDEI CTNAG 3 cut(s) 156, 588, 827
BstF5I GGATG 4 cut(s) 120, 661, 734, 1034
BstFNI CGCG 2 cut(s) 367, 447
BstKTI GATC 9 cut(s) 136, 172, 219, 495, 583, 646, 889, 970, 1167
BstMAI GTCTC 1 cut(s) 945
BstMBI GATC 9 cut(s) 133, 169, 216, 492, 580, 643, 886, 967, 1164
BstMWI GCNNNNNNNGC 5 cut(s) 157, 254, 444, 687, 716
BstNI CCWGG 4 cut(s) 165, 675, 716, 812
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 6 cut(s) 163, 459, 460, 673, 714, 810
BstSFI CTRYAG 3 cut(s) 408, 688, 1155
BstUI CGCG 2 cut(s) 367, 447
BstV1I GCAGC 2 cut(s) 48, 674
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 1 cut(s) 492
BstXI CCANNNNNNTGG 2 cut(s) 512, 1025
BstYI RGATCY 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 1005
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 2 cut(s) 458, 698
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 4 cut(s) 120, 661, 734, 1034
BtsIMutI CAGTG 3 cut(s) 98, 709, 756
Cac8I GCNNGC 2 cut(s) 143, 878
CciI TCATGA 2 cut(s) 550, 646
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 3 cut(s) 442, 457, 903
Cfr9I CCCGGG 1 cut(s) 460
ClaI ATCGAT 1 cut(s) 132
CsiI ACCWGGT 1 cut(s) 163
Csp6I GTAC 3 cut(s) 352, 379, 625
CviAII CATG 6 cut(s) 112, 225, 512, 551, 647, 980
CviQI GTAC 3 cut(s) 352, 379, 625
DdeI CTNAG 3 cut(s) 156, 588, 827
DpnI GATC 9 cut(s) 135, 171, 218, 494, 582, 645, 888, 969, 1166
DpnII GATC 9 cut(s) 133, 169, 216, 492, 580, 643, 886, 967, 1164
Eam1104I CTCTTC 2 cut(s) 948, 1072
EarI CTCTTC 2 cut(s) 948, 1072
Eco24I GRGCYC 1 cut(s) 467
Eco47I GGWCC 2 cut(s) 442, 903
Eco57I CTGAAG 2 cut(s) 741, 816
Eco88I CYCGRG 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 457
EcoRI GAATTC 1 cut(s) 866
EcoRII CCWGG 4 cut(s) 163, 673, 714, 810
EcoT22I ATGCAT 1 cut(s) 981
EcoT38I GRGCYC 1 cut(s) 467
Esp3I CGTCTC 1 cut(s) 945
FaeI CATG 6 cut(s) 115, 228, 515, 554, 650, 983
FalI AAGNNNNNCTT 4 cut(s) 338, 370, 479, 511
FaqI GGGAC 2 cut(s) 30, 614
FatI CATG 6 cut(s) 111, 224, 511, 550, 646, 979
FauNDI CATATG 1 cut(s) 945
FbaI TGATCA 1 cut(s) 643
FblI GTMKAC 2 cut(s) 1004, 1122
Fnu4HI GCNGC 3 cut(s) 7, 62, 688
FokI GGATG 4 cut(s) 107, 668, 721, 1041
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 3 cut(s) 7, 62, 688
FspBI CTAG 2 cut(s) 1118, 1169
GluI GCNGC 3 cut(s) 7, 62, 688
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 1 cut(s) 685
HaeIII GGCC 2 cut(s) 458, 698
HapII CCGG 4 cut(s) 29, 179, 461, 537
Hin1II CATG 6 cut(s) 115, 228, 515, 554, 650, 983
HinfI GANTC 6 cut(s) 39, 88, 101, 326, 844, 1064
HpaII CCGG 4 cut(s) 29, 179, 461, 537
HphI GGTGA 4 cut(s) 179, 987, 1121, 1186
Hpy166II GTNNAC 3 cut(s) 315, 1005, 1123
Hpy188I TCNGA 6 cut(s) 580, 634, 643, 843, 861, 1144
Hpy188III TCNNGA 8 cut(s) 155, 179, 214, 424, 551, 647, 971, 1018
Hpy8I GTNNAC 3 cut(s) 315, 1005, 1123
HpyAV CCTTC 4 cut(s) 410, 511, 866, 908
HpyCH4V TGCA 9 cut(s) 96, 141, 248, 669, 690, 710, 979, 1157, 1185
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 254, 444, 687, 716
HpyF3I CTNAG 3 cut(s) 156, 588, 827
Hsp92II CATG 6 cut(s) 115, 228, 515, 554, 650, 983
Kpn2I TCCGGA 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 9 cut(s) 133, 169, 216, 492, 580, 643, 886, 967, 1164
LguI GCTCTTC 1 cut(s) 948
LmnI GCTCC 5 cut(s) 58, 367, 401, 470, 664
Lsp1109I GCAGC 2 cut(s) 48, 674
LweI GCATC 3 cut(s) 646, 743, 1019
MabI ACCWGGT 1 cut(s) 163
MaeI CTAG 2 cut(s) 1118, 1169
MaeIII GTNAC 2 cut(s) 68, 993
MalI GATC 9 cut(s) 135, 171, 218, 494, 582, 645, 888, 969, 1166
MboI GATC 9 cut(s) 133, 169, 216, 492, 580, 643, 886, 967, 1164
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 8 cut(s) 12, 21, 197, 203, 727, 866, 934, 1138
MlyI GAGTC 3 cut(s) 95, 335, 1058
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 9 cut(s) 162, 276, 483, 562, 646, 709, 916, 1032, 1165
Mph1103I ATGCAT 1 cut(s) 981
MroI TCCGGA 1 cut(s) 178
MroXI GAANNNNTTC 3 cut(s) 290, 866, 934
MseI TTAA 3 cut(s) 497, 750, 1195
MspI CCGG 4 cut(s) 29, 179, 461, 537
MspR9I CCNGG 6 cut(s) 165, 461, 462, 675, 716, 812
MvaI CCWGG 4 cut(s) 165, 675, 716, 812
MvnI CGCG 2 cut(s) 367, 447
MwoI GCNNNNNNNGC 5 cut(s) 157, 254, 444, 687, 716
NciI CCSGG 2 cut(s) 461, 462
NdeI CATATG 1 cut(s) 945
NdeII GATC 9 cut(s) 133, 169, 216, 492, 580, 643, 886, 967, 1164
NlaIII CATG 6 cut(s) 115, 228, 515, 554, 650, 983
NlaIV GGNNCC 3 cut(s) 183, 459, 466
NmuCI GTSAC 2 cut(s) 68, 993
NsiI ATGCAT 1 cut(s) 981
NspI RCATGY 1 cut(s) 115
NspV TTCGAA 1 cut(s) 870
PagI TCATGA 2 cut(s) 550, 646
PciSI GCTCTTC 1 cut(s) 948
PdmI GAANNNNTTC 3 cut(s) 290, 866, 934
PfeI GAWTC 3 cut(s) 39, 88, 844
PkrI GCNGC 3 cut(s) 8, 63, 689
PleI GAGTC 3 cut(s) 95, 334, 1058
PpsI GAGTC 3 cut(s) 95, 334, 1058
Psp6I CCWGG 4 cut(s) 163, 673, 714, 810
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 4 cut(s) 163, 673, 714, 810
PspN4I GGNNCC 3 cut(s) 183, 459, 466
PspPI GGNCC 3 cut(s) 442, 457, 903
PstI CTGCAG 2 cut(s) 692, 1159
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 3 cut(s) 353, 380, 626
RsaNI GTAC 3 cut(s) 352, 379, 625
SapI GCTCTTC 1 cut(s) 948
SaqAI TTAA 3 cut(s) 497, 750, 1195
SatI GCNGC 3 cut(s) 7, 62, 688
Sau3AI GATC 9 cut(s) 133, 169, 216, 492, 580, 643, 886, 967, 1164
Sau96I GGNCC 3 cut(s) 442, 457, 903
SchI GAGTC 3 cut(s) 95, 335, 1058
ScrFI CCNGG 6 cut(s) 165, 461, 462, 675, 716, 812
SduI GDGCHC 1 cut(s) 467
SexAI ACCWGGT 1 cut(s) 163
SfaNI GCATC 3 cut(s) 646, 743, 1019
SfcI CTRYAG 3 cut(s) 408, 688, 1155
SfuI TTCGAA 1 cut(s) 870
SinI GGWCC 2 cut(s) 442, 903
SmaI CCCGGG 1 cut(s) 462
SpeI ACTAGT 1 cut(s) 1117
Sse9I AATT 8 cut(s) 12, 21, 197, 203, 727, 866, 934, 1138
SsiI CCGC 4 cut(s) 365, 445, 681, 783
SspI AATATT 1 cut(s) 1093
SspMI CTAG 2 cut(s) 1118, 1169
StyD4I CCNGG 6 cut(s) 163, 459, 460, 673, 714, 810
TaqI TCGA 2 cut(s) 132, 870
TasI AATT 8 cut(s) 12, 21, 197, 203, 727, 866, 934, 1138
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 3 cut(s) 39, 88, 844
Tru1I TTAA 3 cut(s) 497, 750, 1195
Tru9I TTAA 3 cut(s) 497, 750, 1195
TscAI CASTG 3 cut(s) 98, 709, 763
TseFI GTSAC 2 cut(s) 68, 993
TseI GCWGC 3 cut(s) 6, 61, 687
Tsp45I GTSAC 2 cut(s) 68, 993
TspDTI ATGAA 5 cut(s) 250, 539, 780, 879, 1128
TspGWI ACGGA 1 cut(s) 32
TspMI CCCGGG 1 cut(s) 460
TspRI CASTG 3 cut(s) 98, 709, 763
VpaK11BI GGWCC 2 cut(s) 442, 903
XapI RAATTY 3 cut(s) 12, 727, 866
XceI RCATGY 1 cut(s) 115
XmaI CCCGGG 1 cut(s) 460
XmiI GTMKAC 2 cut(s) 1004, 1122
XmnI GAANNNNTTC 3 cut(s) 290, 866, 934
XspI CTAG 2 cut(s) 1118, 1169
Zsp2I ATGCAT 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.