RchiOBHm_Chr1g0333801
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000639
Physical Location & Seq
Reverse (-)
25941028 .. 25941981
954 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56258

Sequence Viewer

Length: 954 bp
ATGAGCTGCGACCATTTACCAGTGCCACCGGAATACCGATGCCGTCCCACCAAAACGGAGCTGCTGTGTGACCACTTGGCGAAGAAGAATTGGTGCAAGGACTCCCAAATCATGTCGATCATCCCTGATATCGATCTGTGCAAGCACGAGCCTCGCGAGCTACCAGGTAATCCATCACCGGAACCAGAGCACCATCAATTTCAATTATCATCAATGATCCAGTCATGTTTATTGTGTTGCTTCTTTGCAGGACTGGCGTTCACAAGGCAGGAAAATCTGGGAAGGAAACTTTACTTCGATTTCTTCTTTTGGTTTACAAGGGCAGAGTCTTGGTATAGTCAGGGCAAGTGGTACTTCTTCGCACCGCGTGAATACAAGTACCCTAACAGCACTCGCTCCAACAGGACTACAGGGGAAGGGTCCTGGAAGGTCACAGGCAAGGACCGTGACATCAAGGCCCCGGGCTCCGAAGCTGTGATTGGGAGGAAGAGGATCTTGACCTTCCAAAAACGTGGAGTGCCGAAATCCCACAAGACCGGCTATGTTATTCATGAGTATTATCACATTCAGCCCCATTCTGACCCTCCTAAGCAGATAGGGGACTTTGTTGTCTGTTGCTTGAAGTACAAGCCTGTCTCTGATCATGATGAGGATGCTCCATTCTGCAATCGAGGTAGCGGTAGCTGCAGTATGGTTTCCAATGTTGCAAATCAGGCTGAAGAAAATTTGGCGTCCAATGAGCAGTTTAATGGCACTGATGATGAAGCTGAAACTGGTGGCGGTTGGATTACTGAAGCAGAACAACACCTGGCATATAAGAGAGATGGTCTTCGGACTGCCATTGGAAATCAGAATGAATTCCAAGGCTCGCAGACTGATCCTTGTAATCTTTGGACCTCTGTTGAAGGTCAAGCTGATAGAAGCAATTCGTCTCATATGATTGAAGAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

317

Amino Acids

36.16

Weight (kDa)

6.07

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 58 6.7e-07 No apical meristem (NAM) protein
NAM PF02365 113 - 186 6.7e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 608
AccII CGCG 2 cut(s) 156, 367
AciI CCGC 3 cut(s) 365, 678, 780
AclWI GGATC 3 cut(s) 211, 500, 872
AcsI RAATTY 2 cut(s) 724, 857
AcuI CTGAAG 2 cut(s) 738, 813
AcyI GRCGYC 1 cut(s) 731
AdeI CACNNNGTG 1 cut(s) 368
AfaI GTAC 3 cut(s) 353, 380, 626
AgsI TTSAA 4 cut(s) 203, 622, 905, 944
AjnI CCWGG 3 cut(s) 163, 422, 807
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AluBI AGCT 7 cut(s) 6, 61, 160, 473, 684, 767, 914
AluI AGCT 7 cut(s) 6, 61, 160, 473, 684, 767, 914
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 640, 936
AlwI GGATC 3 cut(s) 211, 500, 872
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 6, 61, 684
ApoI RAATTY 2 cut(s) 724, 857
Asp700I GAANNNNTTC 2 cut(s) 857, 925
AspS9I GGNCC 4 cut(s) 420, 442, 457, 894
AsuC2I CCSGG 2 cut(s) 461, 462
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 3 cut(s) 420, 442, 894
BanII GRGCYC 1 cut(s) 467
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 821
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 48, 671
BccI CCATC 3 cut(s) 181, 201, 818
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 3 cut(s) 165, 424, 809
BclI TGATCA 1 cut(s) 640
BcnI CCSGG 2 cut(s) 461, 462
BcoDI GTCTC 2 cut(s) 640, 936
BfmI CTRYAG 2 cut(s) 408, 685
BisI GCNGC 3 cut(s) 7, 62, 685
BlsI GCNGC 3 cut(s) 8, 63, 686
Bme1390I CCNGG 5 cut(s) 165, 424, 461, 462, 809
Bme18I GGWCC 3 cut(s) 420, 442, 894
BmeT110I CYCGRG 1 cut(s) 460
BmgT120I GGNCC 4 cut(s) 420, 442, 457, 894
BmiI GGNNCC 4 cut(s) 183, 421, 459, 466
BmrFI CCNGG 5 cut(s) 165, 424, 461, 462, 809
BmsI GCATC 2 cut(s) 29, 643
BpiI GAAGAC 1 cut(s) 821
Bpu10I CCTNAGC 1 cut(s) 588
BpuMI CCSGG 2 cut(s) 461, 462
Bsa29I ATCGAT 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 731
BsaJI CCNNGG 3 cut(s) 459, 460, 862
BsaWI WCCGGW 2 cut(s) 28, 178
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 4 cut(s) 20, 220, 258, 778
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 3 cut(s) 165, 424, 809
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 459, 460, 862
BseGI GGATG 2 cut(s) 120, 658
BseJI GATNNNNATC 1 cut(s) 132
BseNI ACTGG 4 cut(s) 20, 220, 258, 778
BseXI GCAGC 2 cut(s) 48, 671
Bsh1236I CGCG 2 cut(s) 156, 367
BshFI GGCC 1 cut(s) 458
BshVI ATCGAT 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 4 cut(s) 29, 179, 461, 537
BslFI GGGAC 2 cut(s) 30, 614
BsmAI GTCTC 2 cut(s) 640, 936
BsmBI CGTCTC 1 cut(s) 936
BsmFI GGGAC 2 cut(s) 30, 614
BsnI GGCC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 460
Bsp1286I GDGCHC 2 cut(s) 192, 467
Bsp143I GATC 6 cut(s) 117, 133, 216, 492, 640, 877
Bsp68I TCGCGA 1 cut(s) 156
BspACI CCGC 3 cut(s) 365, 678, 780
BspANI GGCC 1 cut(s) 458
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 2 cut(s) 156, 367
BspHI TCATGA 2 cut(s) 550, 643
BspLI GGNNCC 4 cut(s) 183, 421, 459, 466
BspMAI CTGCAG 1 cut(s) 689
BspPI GGATC 3 cut(s) 211, 500, 872
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 4 cut(s) 20, 220, 258, 778
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 3 cut(s) 459, 460, 862
BssMI GATC 6 cut(s) 117, 133, 216, 492, 640, 877
BssNI GRCGYC 1 cut(s) 731
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 862
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 3 cut(s) 165, 424, 809
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 2 cut(s) 482, 939
BstACI GRCGYC 1 cut(s) 731
BstC8I GCNNGC 3 cut(s) 143, 158, 869
BstDEI CTNAG 1 cut(s) 588
BstF5I GGATG 2 cut(s) 120, 658
BstFNI CGCG 2 cut(s) 156, 367
BstKTI GATC 6 cut(s) 120, 136, 219, 495, 643, 880
BstMAI GTCTC 2 cut(s) 640, 936
BstMBI GATC 6 cut(s) 117, 133, 216, 492, 640, 877
BstMWI GCNNNNNNNGC 4 cut(s) 157, 254, 684, 713
BstNI CCWGG 3 cut(s) 165, 424, 809
BstSCI CCNGG 5 cut(s) 163, 422, 459, 460, 807
BstSFI CTRYAG 2 cut(s) 408, 685
BstUI CGCG 2 cut(s) 156, 367
BstV1I GCAGC 2 cut(s) 48, 671
BstV2I GAAGAC 1 cut(s) 821
BstX2I RGATCY 1 cut(s) 492
BstXI CCANNNNNNTGG 1 cut(s) 512
BstYI RGATCY 1 cut(s) 492
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 1 cut(s) 458
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 2 cut(s) 120, 658
BtsIMutI CAGTG 2 cut(s) 27, 753
BtuMI TCGCGA 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 143, 158, 869
CciI TCATGA 2 cut(s) 550, 643
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 4 cut(s) 420, 442, 457, 894
Cfr9I CCCGGG 1 cut(s) 460
ClaI ATCGAT 1 cut(s) 132
CseI GACGC 1 cut(s) 720
CsiI ACCWGGT 1 cut(s) 163
Csp6I GTAC 3 cut(s) 352, 379, 625
CviAII CATG 4 cut(s) 112, 225, 551, 644
CviQI GTAC 3 cut(s) 352, 379, 625
DdeI CTNAG 1 cut(s) 588
DpnI GATC 6 cut(s) 119, 135, 218, 494, 642, 879
DpnII GATC 6 cut(s) 117, 133, 216, 492, 640, 877
DraIII CACNNNGTG 1 cut(s) 368
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
Eam1104I CTCTTC 2 cut(s) 482, 939
EarI CTCTTC 2 cut(s) 482, 939
Eco130I CCWWGG 1 cut(s) 862
Eco24I GRGCYC 1 cut(s) 467
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 3 cut(s) 420, 442, 894
Eco57I CTGAAG 2 cut(s) 738, 813
Eco88I CYCGRG 1 cut(s) 460
EcoO109I RGGNCCY 2 cut(s) 420, 457
EcoRI GAATTC 1 cut(s) 857
EcoRII CCWGG 3 cut(s) 163, 422, 807
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 862
EcoT38I GRGCYC 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 862
Esp3I CGTCTC 1 cut(s) 936
FaeI CATG 4 cut(s) 115, 228, 554, 647
FalI AAGNNNNNCTT 4 cut(s) 338, 370, 479, 511
FaqI GGGAC 2 cut(s) 30, 614
FatI CATG 4 cut(s) 111, 224, 550, 643
FauNDI CATATG 1 cut(s) 936
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 3 cut(s) 7, 62, 685
FokI GGATG 2 cut(s) 107, 665
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 3 cut(s) 7, 62, 685
GluI GCNGC 3 cut(s) 7, 62, 685
HaeIII GGCC 1 cut(s) 458
HapII CCGG 4 cut(s) 29, 179, 461, 537
HgaI GACGC 1 cut(s) 720
Hin1I GRCGYC 1 cut(s) 731
Hin1II CATG 4 cut(s) 115, 228, 554, 647
HinfI GANTC 2 cut(s) 101, 326
HpaII CCGG 4 cut(s) 29, 179, 461, 537
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 2 cut(s) 261, 315
Hpy188I TCNGA 6 cut(s) 469, 580, 640, 834, 852, 953
Hpy188III TCNNGA 4 cut(s) 155, 496, 551, 644
Hpy8I GTNNAC 2 cut(s) 261, 315
HpyAV CCTTC 5 cut(s) 276, 410, 421, 511, 899
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 6 cut(s) 96, 141, 248, 666, 687, 707
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 254, 684, 713
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 1 cut(s) 511
Hsp92I GRCGYC 1 cut(s) 731
Hsp92II CATG 4 cut(s) 115, 228, 554, 647
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 6 cut(s) 117, 133, 216, 492, 640, 877
LmnI GCTCC 4 cut(s) 58, 401, 470, 661
Lsp1109I GCAGC 2 cut(s) 48, 671
LweI GCATC 2 cut(s) 29, 643
MabI ACCWGGT 1 cut(s) 163
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 3 cut(s) 68, 430, 446
MalI GATC 6 cut(s) 119, 135, 218, 494, 642, 879
MboI GATC 6 cut(s) 117, 133, 216, 492, 640, 877
MboII GAAGA 7 cut(s) 94, 97, 295, 349, 499, 731, 821
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 2 cut(s) 192, 467
MluCI AATT 6 cut(s) 88, 197, 203, 724, 857, 925
MlyI GAGTC 2 cut(s) 95, 335
MmeI TCCRAC 2 cut(s) 423, 764
MnlI CCTC 8 cut(s) 162, 477, 483, 594, 643, 665, 907, 940
MroXI GAANNNNTTC 2 cut(s) 857, 925
MseI TTAA 1 cut(s) 747
MspI CCGG 4 cut(s) 29, 179, 461, 537
MspR9I CCNGG 5 cut(s) 165, 424, 461, 462, 809
MvaI CCWGG 3 cut(s) 165, 424, 809
MvnI CGCG 2 cut(s) 156, 367
MwoI GCNNNNNNNGC 4 cut(s) 157, 254, 684, 713
NciI CCSGG 2 cut(s) 461, 462
NdeI CATATG 1 cut(s) 936
NdeII GATC 6 cut(s) 117, 133, 216, 492, 640, 877
NlaIII CATG 4 cut(s) 115, 228, 554, 647
NlaIV GGNNCC 4 cut(s) 183, 421, 459, 466
NmuCI GTSAC 3 cut(s) 68, 430, 446
NruI TCGCGA 1 cut(s) 156
PagI TCATGA 2 cut(s) 550, 643
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 857, 925
PfoI TCCNGGA 1 cut(s) 422
PkrI GCNGC 3 cut(s) 8, 63, 686
PleI GAGTC 2 cut(s) 95, 334
PpsI GAGTC 2 cut(s) 95, 334
PpuMI RGGWCCY 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 420
Psp6I CCWGG 3 cut(s) 163, 422, 807
PspGI CCWGG 3 cut(s) 163, 422, 807
PspN4I GGNNCC 4 cut(s) 183, 421, 459, 466
PspPI GGNCC 4 cut(s) 420, 442, 457, 894
PspPPI RGGWCCY 1 cut(s) 420
PstI CTGCAG 1 cut(s) 689
PsuI RGATCY 1 cut(s) 492
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 3 cut(s) 353, 380, 626
RsaNI GTAC 3 cut(s) 352, 379, 625
SaqAI TTAA 1 cut(s) 747
SatI GCNGC 3 cut(s) 7, 62, 685
Sau3AI GATC 6 cut(s) 117, 133, 216, 492, 640, 877
Sau96I GGNCC 4 cut(s) 420, 442, 457, 894
SchI GAGTC 2 cut(s) 95, 335
ScrFI CCNGG 5 cut(s) 165, 424, 461, 462, 809
SduI GDGCHC 2 cut(s) 192, 467
SexAI ACCWGGT 1 cut(s) 163
SfaNI GCATC 2 cut(s) 29, 643
SfcI CTRYAG 2 cut(s) 408, 685
SinI GGWCC 3 cut(s) 420, 442, 894
SmaI CCCGGG 1 cut(s) 462
Sse9I AATT 6 cut(s) 88, 197, 203, 724, 857, 925
SsiI CCGC 3 cut(s) 365, 678, 780
StyD4I CCNGG 5 cut(s) 163, 422, 459, 460, 807
StyI CCWWGG 1 cut(s) 862
TaaI ACNGT 1 cut(s) 446
TaiI ACGT 1 cut(s) 514
TaqI TCGA 4 cut(s) 116, 132, 297, 670
TasI AATT 6 cut(s) 88, 197, 203, 724, 857, 925
TatI WGTACW 1 cut(s) 624
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TscAI CASTG 2 cut(s) 27, 760
TseFI GTSAC 3 cut(s) 68, 430, 446
TseI GCWGC 3 cut(s) 6, 61, 684
Tsp45I GTSAC 3 cut(s) 68, 430, 446
TspDTI ATGAA 3 cut(s) 539, 777, 870
TspGWI ACGGA 1 cut(s) 71
TspMI CCCGGG 1 cut(s) 460
TspRI CASTG 2 cut(s) 27, 760
VpaK11BI GGWCC 3 cut(s) 420, 442, 894
XapI RAATTY 2 cut(s) 724, 857
XmaI CCCGGG 1 cut(s) 460
XmnI GAANNNNTTC 2 cut(s) 857, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.