Rh1AG064300
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000639
Physical Location & Seq
Reverse (-)
10709932 .. 10712700
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG064300.1

Sequence Viewer

Length: 1254 bp
ATGTGCTGCGGCGGCTTCACAGTTCCGAAGGGATACCGATTCCATCCCTCCGACGAGGAGCTGCTTAGTCACTACTTGGAGGAGAAGAATAAGTGCAAGGACTCCCAGATCACTACCATCATCCCTGAAATCGATGTGTGCAAGCACGAACCGCGCGAGTTGCCAGAACTGGCGTTCACAAGGGCGGAAAGTCTGGGCAGGAAATTTTTCTTTCTCTTCTTTTTTTGGTTTGCAAGGGAAGTGTCTTGGGACAATCAGGGAAAGTGGTACTTCTTCACTCCGCGTGATTACAAGTACAATAACAGCACTCGCTCCAACAGGACTACAGGGGAAGGGTTTTGGAAGATCACAGGCAAGGAACGTGCAATCAAGGCCCCCGGCTCCAAAGCTGTGATTGGTAGAAAGAGGACGTTGACCTTCTACAAACGTGGAGTGCCGAAATCCCAGAAGACCAGCTGGGTTATTCATGAGTATTATCTCATTCAGGCACATTCTGATCCTCCTAAGCAGATAGGGGACTTTGTTGTCTGCTGCTTGAAGTACAAGTCAGACAACTTTCATCATGATAAGGATGCTCCATTCTGTGATCGAGGTAGCAGTAGCCGCAGTATGGCCTCCAATGTTGAAAATCAAGCTGAAGAAAATTGGGCATCGAAAGAGCTGGTTAATGTTGTTCCAATTCCCAGTGGAAATGATGATGAAGCTGAAACTGGTGGTGCTATGATTACAGAAGAAGAGGAGTACCTGACTTTAAAGGAGCTGAGAGACGCTCTTCAGATTCCCATTGGCAATCCGCATGAATTCGAAGTCCAAGGCACACAAACTGATCCTTGTCGTATAGATAAGAAGGATCCTTCAACCGATGTTGAAGGCCAACCTGATAGAAGCAATTCATCTGATATGATTGAAGAGCTACTAGATGACCCAGAAAATCTGGATTCACTCTTTCATCCGCCTGCACCACCTCAACTGCATCAGTCACCGATGCATACCACCAATATCCATAATGATGAATGTCGTAAGAGGACATATCCATTTGAGCATAATGACCCTTCTCTTACGAAGAAGAATAATATCTCAACCAATGATAACGACGAATTAGTTAGCAACATCGCATCTAGTTCTGAAAATCAAGCCGCAAATATGATTCCAGAGGCAGTGAAGCTGCAGGGGCATTGTACTGCTGTTTATCTGCCCCAGAAGAAACTGGAAGTCCTGGAAGCAGACAACAGTTCAAAGCTGGCAGCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

417

Amino Acids

47.5

Weight (kDa)

5.46

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 159 1.7e-32 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccII CGCG 3 cut(s) 154, 156, 283
AciI CCGC 9 cut(s) 9, 12, 152, 185, 281, 604, 794, 953, 1137
AclWI GGATC 4 cut(s) 491, 821, 845, 858
AcsI RAATTY 2 cut(s) 203, 800
AcuI CTGAAG 2 cut(s) 657, 758
AfaI GTAC 5 cut(s) 269, 296, 542, 743, 1180
AfiI CCNNNNNNNGG 1 cut(s) 610
AgsI TTSAA 6 cut(s) 538, 626, 858, 869, 908, 1236
AjnI CCWGG 1 cut(s) 1215
Alw26I GTCTC 1 cut(s) 759
AlwI GGATC 4 cut(s) 491, 821, 845, 858
AoxI GGCC 3 cut(s) 372, 612, 871
ApeKI GCWGC 5 cut(s) 6, 61, 531, 1165, 1244
ApoI RAATTY 2 cut(s) 203, 800
Asp700I GAANNNNTTC 2 cut(s) 206, 889
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 373
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 972
AsuII TTCGAA 1 cut(s) 804
BamHI GGATCC 1 cut(s) 850
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 48, 518, 1152
BccI CCATC 2 cut(s) 51, 125
BciT130I CCWGG 1 cut(s) 1217
BciVI GTATCC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 759
BfaI CTAG 2 cut(s) 917, 1119
BfmI CTRYAG 2 cut(s) 324, 1166
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1137, 1166, 1245
BlsI GCNGC 9 cut(s) 8, 11, 14, 63, 533, 605, 1138, 1167, 1246
Bme1390I CCNGG 2 cut(s) 378, 1217
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 3 cut(s) 375, 382, 852
BmrFI CCNGG 2 cut(s) 378, 1217
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 5 cut(s) 562, 659, 975, 982, 1124
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 754, 786
Bpu10I CCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 804
BpuMI CCSGG 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 376, 811
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse1I ACTGG 4 cut(s) 174, 684, 715, 1212
BseBI CCWGG 1 cut(s) 1217
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 376, 811
BseGI GGATG 4 cut(s) 43, 120, 577, 949
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 1 cut(s) 752
BseNI ACTGG 4 cut(s) 174, 684, 715, 1212
BseRI GAGGAG 3 cut(s) 71, 95, 752
BseXI GCAGC 3 cut(s) 48, 518, 1152
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 3 cut(s) 154, 156, 283
BshFI GGCC 3 cut(s) 374, 614, 873
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 2 cut(s) 263, 530
BslI CCNNNNNNNGG 1 cut(s) 610
BsmAI GTCTC 1 cut(s) 759
BsmBI CGTCTC 1 cut(s) 759
BsmFI GGGAC 2 cut(s) 263, 530
BsnI GGCC 3 cut(s) 374, 614, 873
Bsp119I TTCGAA 1 cut(s) 804
Bsp143I GATC 6 cut(s) 108, 345, 496, 586, 826, 850
BspACI CCGC 9 cut(s) 9, 12, 152, 185, 281, 604, 794, 953, 1137
BspANI GGCC 3 cut(s) 374, 614, 873
BspCNI CTCAG 1 cut(s) 753
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 3 cut(s) 154, 156, 283
BspHI TCATGA 2 cut(s) 466, 562
BspLI GGNNCC 3 cut(s) 375, 382, 852
BspMAI CTGCAG 1 cut(s) 1170
BspPI GGATC 4 cut(s) 491, 821, 845, 858
BspQI GCTCTTC 2 cut(s) 777, 903
BspT104I TTCGAA 1 cut(s) 804
BsrI ACTGG 4 cut(s) 174, 684, 715, 1212
BssECI CCNNGG 2 cut(s) 376, 811
BssMI GATC 6 cut(s) 108, 345, 496, 586, 826, 850
BssT1I CCWWGG 1 cut(s) 811
Bst2UI CCWGG 1 cut(s) 1217
Bst4CI ACNGT 2 cut(s) 22, 1232
Bst6I CTCTTC 4 cut(s) 221, 729, 777, 903
BstBI TTCGAA 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 143, 957, 1242
BstDEI CTNAG 3 cut(s) 65, 504, 761
BstF5I GGATG 4 cut(s) 43, 120, 577, 949
BstFNI CGCG 3 cut(s) 154, 156, 283
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 6 cut(s) 111, 348, 499, 589, 829, 853
BstMAI GTCTC 1 cut(s) 759
BstMBI GATC 6 cut(s) 108, 345, 496, 586, 826, 850
BstMWI GCNNNNNNNGC 6 cut(s) 12, 151, 160, 371, 603, 1171
BstNI CCWGG 1 cut(s) 1217
BstSCI CCNGG 2 cut(s) 376, 1215
BstSFI CTRYAG 2 cut(s) 324, 1166
BstUI CGCG 3 cut(s) 154, 156, 283
BstV1I GCAGC 3 cut(s) 48, 518, 1152
BstV2I GAAGAC 1 cut(s) 455
BstX2I RGATCY 1 cut(s) 850
BstYI RGATCY 1 cut(s) 850
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 374, 614, 873
BsuTUI ATCGAT 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 1096
BtsCI GGATG 4 cut(s) 43, 120, 577, 949
BtsI GCAGTG 1 cut(s) 1164
BtsIMutI CAGTG 2 cut(s) 691, 1164
Cac8I GCNNGC 3 cut(s) 143, 957, 1242
CciI TCATGA 2 cut(s) 466, 562
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 373
ClaI ATCGAT 1 cut(s) 132
CseI GACGC 1 cut(s) 776
Csp6I GTAC 5 cut(s) 268, 295, 541, 742, 1179
CviAII CATG 3 cut(s) 467, 563, 797
CviQI GTAC 5 cut(s) 268, 295, 541, 742, 1179
DdeI CTNAG 3 cut(s) 65, 504, 761
DpnI GATC 6 cut(s) 110, 347, 498, 588, 828, 852
DpnII GATC 6 cut(s) 108, 345, 496, 586, 826, 850
DraI TTTAAA 1 cut(s) 753
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
Eam1104I CTCTTC 4 cut(s) 221, 729, 777, 903
EarI CTCTTC 4 cut(s) 221, 729, 777, 903
EciI GGCGGA 2 cut(s) 200, 942
Eco130I CCWWGG 1 cut(s) 811
Eco57I CTGAAG 2 cut(s) 657, 758
EcoO109I RGGNCCY 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 1215
EcoT14I CCWWGG 1 cut(s) 811
EcoT22I ATGCAT 1 cut(s) 990
ErhI CCWWGG 1 cut(s) 811
Esp3I CGTCTC 1 cut(s) 759
FaeI CATG 3 cut(s) 470, 566, 800
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 263, 530
FatI CATG 3 cut(s) 466, 562, 796
Fnu4HI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1137, 1166, 1245
FokI GGATG 4 cut(s) 30, 107, 584, 936
Fsp4HI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1137, 1166, 1245
FspBI CTAG 2 cut(s) 917, 1119
GlaI GCGC 1 cut(s) 155
GluI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1137, 1166, 1245
GsaI CCCAGC 1 cut(s) 460
HaeIII GGCC 3 cut(s) 374, 614, 873
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 776
HhaI GCGC 1 cut(s) 156
Hin1II CATG 3 cut(s) 470, 566, 800
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 5 cut(s) 39, 101, 778, 938, 1147
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 972
Hpy166II GTNNAC 2 cut(s) 177, 414
Hpy188I TCNGA 7 cut(s) 27, 52, 496, 550, 777, 898, 1126
Hpy188III TCNNGA 4 cut(s) 467, 563, 935, 1151
Hpy8I GTNNAC 2 cut(s) 177, 414
Hpy99I CGWCG 2 cut(s) 56, 1097
HpyAV CCTTC 7 cut(s) 22, 326, 427, 841, 863, 864, 1062
HpyCH4III ACNGT 2 cut(s) 22, 1232
HpyCH4IV ACGT 3 cut(s) 361, 410, 427
HpyCH4V TGCA 8 cut(s) 96, 141, 233, 365, 959, 973, 988, 1168
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 151, 160, 371, 603, 1171
HpyF3I CTNAG 3 cut(s) 65, 504, 761
HpySE526I ACGT 3 cut(s) 361, 410, 427
Hsp92II CATG 3 cut(s) 470, 566, 800
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 6 cut(s) 108, 345, 496, 586, 826, 850
LguI GCTCTTC 2 cut(s) 777, 903
LmnI GCTCC 5 cut(s) 58, 317, 386, 580, 757
Lsp1109I GCAGC 3 cut(s) 48, 518, 1152
LweI GCATC 5 cut(s) 562, 659, 975, 982, 1124
MaeI CTAG 2 cut(s) 917, 1119
MaeII ACGT 3 cut(s) 361, 410, 427
MaeIII GTNAC 2 cut(s) 68, 978
MalI GATC 6 cut(s) 110, 347, 498, 588, 828, 852
MboI GATC 6 cut(s) 108, 345, 496, 586, 826, 850
MflI RGATCY 1 cut(s) 850
MluCI AATT 6 cut(s) 203, 643, 678, 800, 889, 1097
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 75, 339
Mph1103I ATGCAT 1 cut(s) 990
MroXI GAANNNNTTC 2 cut(s) 206, 889
MseI TTAA 2 cut(s) 666, 752
MslI CAYNNNNRTG 1 cut(s) 1008
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 2 cut(s) 378, 1217
MvaI CCWGG 1 cut(s) 1217
MvnI CGCG 3 cut(s) 154, 156, 283
MwoI GCNNNNNNNGC 6 cut(s) 12, 151, 160, 371, 603, 1171
NciI CCSGG 1 cut(s) 378
NdeII GATC 6 cut(s) 108, 345, 496, 586, 826, 850
NlaIII CATG 3 cut(s) 470, 566, 800
NlaIV GGNNCC 3 cut(s) 375, 382, 852
NmuCI GTSAC 2 cut(s) 68, 978
NsiI ATGCAT 1 cut(s) 990
NspV TTCGAA 1 cut(s) 804
PagI TCATGA 2 cut(s) 466, 562
PciSI GCTCTTC 2 cut(s) 777, 903
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 206, 889
PfeI GAWTC 4 cut(s) 39, 778, 938, 1147
PfoI TCCNGGA 1 cut(s) 1215
PkrI GCNGC 9 cut(s) 8, 11, 14, 63, 533, 605, 1138, 1167, 1246
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 1215
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 1 cut(s) 1215
PspN4I GGNNCC 3 cut(s) 375, 382, 852
PspPI GGNCC 1 cut(s) 373
PstI CTGCAG 1 cut(s) 1170
PsuI RGATCY 1 cut(s) 850
PvuII CAGCTG 1 cut(s) 456
RsaI GTAC 5 cut(s) 269, 296, 542, 743, 1180
RsaNI GTAC 5 cut(s) 268, 295, 541, 742, 1179
RseI CAYNNNNRTG 1 cut(s) 1008
SapI GCTCTTC 2 cut(s) 777, 903
SaqAI TTAA 2 cut(s) 666, 752
SatI GCNGC 9 cut(s) 7, 10, 13, 62, 532, 604, 1137, 1166, 1245
Sau3AI GATC 6 cut(s) 108, 345, 496, 586, 826, 850
Sau96I GGNCC 1 cut(s) 373
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 378, 1217
SfaNI GCATC 5 cut(s) 562, 659, 975, 982, 1124
SfcI CTRYAG 2 cut(s) 324, 1166
SfuI TTCGAA 1 cut(s) 804
SmiMI CAYNNNNRTG 1 cut(s) 1008
Sse9I AATT 6 cut(s) 203, 643, 678, 800, 889, 1097
SsiI CCGC 9 cut(s) 9, 12, 152, 185, 281, 604, 794, 953, 1137
SspMI CTAG 2 cut(s) 917, 1119
StyD4I CCNGG 2 cut(s) 376, 1215
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 2 cut(s) 22, 1232
TaiI ACGT 3 cut(s) 364, 413, 430
TaqI TCGA 4 cut(s) 132, 589, 653, 804
TasI AATT 6 cut(s) 203, 643, 678, 800, 889, 1097
TatI WGTACW 3 cut(s) 294, 540, 1178
TauI GCSGC 4 cut(s) 12, 15, 606, 1139
TfiI GAWTC 4 cut(s) 39, 778, 938, 1147
Tru1I TTAA 2 cut(s) 666, 752
Tru9I TTAA 2 cut(s) 666, 752
TscAI CASTG 2 cut(s) 691, 1164
TseFI GTSAC 2 cut(s) 68, 978
TseI GCWGC 5 cut(s) 6, 61, 531, 1165, 1244
Tsp45I GTSAC 2 cut(s) 68, 978
TspDTI ATGAA 7 cut(s) 455, 548, 714, 813, 882, 938, 1026
TspRI CASTG 2 cut(s) 691, 1164
XapI RAATTY 2 cut(s) 203, 800
XmnI GAANNNNTTC 2 cut(s) 206, 889
XspI CTAG 2 cut(s) 917, 1119
Zsp2I ATGCAT 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.