Rorug01G0290400
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000639
Physical Location & Seq
Forward (+)
40631371 .. 40631556
186 bp
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UTR
Exon/CDS
Intron
Rorug01G0290400.1

Sequence Viewer

Length: 186 bp
ATGAGGCCTTGCAAGACCCTCTTCATCTCCTACTACTCCGTCTCCCTCAGGCGCCTCCCCTCCTCTTCCTCCTCGTCGGGATTCGTCACCGTCGTCACCGAGATCAGAGACCTCAAGCCCATCTGTTTCGACACCGGCGTTTTGGTCCAGCCGGACGACGCCGCCTCCACCGATGAGGCCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

61

Amino Acids

6.71

Weight (kDa)

6.05

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AciI CCGC 2 cut(s) 162, 181
AcyI GRCGYC 2 cut(s) 52, 159
Alw26I GTCTC 2 cut(s) 46, 102
AoxI GGCC 2 cut(s) 5, 177
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 145, 178
AsuHPI GGTGA 2 cut(s) 79, 88
AvaII GGWCC 1 cut(s) 145
AxyI CCTNAGG 1 cut(s) 47
BanI GGYRCC 1 cut(s) 51
BccI CCATC 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 46, 102
BfaI CTAG 1 cut(s) 184
BfoI RGCGCY 1 cut(s) 55
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 145, 178
BmiI GGNNCC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 98
BsaHI GRCGYC 2 cut(s) 52, 159
BsaI GGTCTC 1 cut(s) 102
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 149, 179
Bse118I RCCGGY 1 cut(s) 134
Bse21I CCTNAGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 52, 61
BshFI GGCC 2 cut(s) 7, 179
BshNI GGYRCC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 135, 152
BsmAI GTCTC 2 cut(s) 46, 102
BsmBI CGTCTC 1 cut(s) 46
BsnI GGCC 2 cut(s) 7, 179
Bso31I GGTCTC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 2 cut(s) 162, 181
BspANI GGCC 2 cut(s) 7, 179
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssMI GATC 1 cut(s) 102
BssNI GRCGYC 2 cut(s) 52, 159
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 2 cut(s) 26, 70
BstACI GRCGYC 2 cut(s) 52, 159
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 46, 102
BstMBI GATC 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 47
BsuRI GGCC 2 cut(s) 7, 179
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 145, 178
CseI GACGC 1 cut(s) 167
CviJI RGCY 4 cut(s) 7, 118, 151, 179
CviKI_1 RGCY 4 cut(s) 7, 118, 151, 179
DdeI CTNAG 1 cut(s) 47
DinI GGCGCC 1 cut(s) 53
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 26, 70
EarI CTCTTC 2 cut(s) 26, 70
Eco147I AGGCCT 1 cut(s) 7
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 47
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 46
FalI AAGNNNNNCTT 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 184
GlaI GCGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 2 cut(s) 7, 179
HapII CCGG 2 cut(s) 135, 152
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 54
Hin1I GRCGYC 2 cut(s) 52, 159
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 1 cut(s) 81
HpaII CCGG 2 cut(s) 135, 152
HphI GGTGA 2 cut(s) 79, 88
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 78
Hpy99I CGWCG 3 cut(s) 79, 95, 161
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 47
Hsp92I GRCGYC 2 cut(s) 52, 159
HspAI GCGC 1 cut(s) 52
KasI GGCGCC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 102
LpnPI CCDG 4 cut(s) 34, 148, 161, 165
MaeI CTAG 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 85, 94
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 2 cut(s) 13, 57
Mly113I GGCGCC 1 cut(s) 52
MspI CCGG 2 cut(s) 135, 152
NarI GGCGCC 1 cut(s) 52
NdeII GATC 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 53
NmuCI GTSAC 2 cut(s) 85, 94
PceI AGGCCT 1 cut(s) 7
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 135
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 163
PluTI GGCGCC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 2 cut(s) 145, 178
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 2 cut(s) 145, 178
SetI ASST 1 cut(s) 114
SfoI GGCGCC 1 cut(s) 53
SgrAI CRCCGGYG 1 cut(s) 134
SinI GGWCC 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 2 cut(s) 162, 181
SspDI GGCGCC 1 cut(s) 51
SspMI CTAG 1 cut(s) 184
StuI AGGCCT 1 cut(s) 7
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 129
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 81
TseFI GTSAC 2 cut(s) 85, 94
Tsp45I GTSAC 2 cut(s) 85, 94
TspDTI ATGAA 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 145
XspI CTAG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.