Rmu_sc0017253.1_g000003
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017253.1
OG0000639
Physical Location & Seq
Reverse (-)
19894 .. 21175
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017253.1_g000003.1.cds

Sequence Viewer

Length: 486 bp
atgtataccaccaatgtccataatgatgaatgtcgtaagaggacatatccatttgaggataatgacccttcttctaagaagaagaatatttcaaccaatgatgatgacgaattagttagcaacgctgcatctagttctgaaaatcaagctgcaaatatgattccagagggatattctcaactagtagcaaatctgggatcagactttgattcatttttgccaaaggattacaattatacattaccatcaataaacggaggaccgagagatttttcccatgacaataatttcattgagtgggatgatttactatctttatacgaaggtaatgactcttctctcgcacagttcccacatacagttattgatggaggtagaggagtaatcggtgacagaaacaccgaagtagtacatggatcggcagtgaagttgcagaggcattatactgctatttatctgccccagaagaaactgaaagtcctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

161

Amino Acids

18.03

Weight (kDa)

4.87

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 2 cut(s) 205, 424
AfaI GTAC 1 cut(s) 411
AgsI TTSAA 1 cut(s) 93
AhlI ACTAGT 1 cut(s) 181
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 2 cut(s) 205, 424
ApeKI GCWGC 2 cut(s) 125, 149
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 260
BarI GAAGNNNNNNTAC 2 cut(s) 319, 351
BbvI GCAGC 2 cut(s) 112, 136
BccI CCATC 2 cut(s) 253, 362
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 2 cut(s) 132, 182
BisI GCNGC 2 cut(s) 126, 150
BlsI GCNGC 2 cut(s) 127, 151
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmsI GCATC 1 cut(s) 137
BseGI GGATG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 112, 136
Bsp143I GATC 2 cut(s) 197, 416
BspPI GGATC 2 cut(s) 205, 424
BssMI GATC 2 cut(s) 197, 416
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 348, 361
Bst6I CTCTTC 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 2 cut(s) 200, 419
BstMBI GATC 2 cut(s) 197, 416
BstV1I GCAGC 2 cut(s) 112, 136
BstZ17I GTATAC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 429
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 410
CviAII CATG 2 cut(s) 278, 413
CviJI RGCY 1 cut(s) 149
CviKI_1 RGCY 1 cut(s) 149
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 1 cut(s) 75
DpnI GATC 2 cut(s) 199, 418
DpnII GATC 2 cut(s) 197, 416
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 260
FaeI CATG 2 cut(s) 281, 416
FatI CATG 2 cut(s) 277, 412
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 126, 150
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 126, 150
FspBI CTAG 2 cut(s) 132, 182
GluI GCNGC 2 cut(s) 126, 150
Hin1II CATG 2 cut(s) 281, 416
HinfI GANTC 3 cut(s) 160, 209, 332
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 139, 202
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 78, 317
HpyCH4III ACNGT 2 cut(s) 348, 361
HpyCH4V TGCA 3 cut(s) 128, 152, 433
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 2 cut(s) 281, 416
Kzo9I GATC 2 cut(s) 197, 416
LpnPI CCDG 3 cut(s) 177, 179, 476
Lsp1109I GCAGC 2 cut(s) 112, 136
LweI GCATC 1 cut(s) 137
MaeI CTAG 2 cut(s) 132, 182
MaeIII GTNAC 1 cut(s) 389
MalI GATC 2 cut(s) 199, 418
MboI GATC 2 cut(s) 197, 416
MboII GAAGA 5 cut(s) 63, 91, 94, 327, 478
MluCI AATT 3 cut(s) 110, 232, 286
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 7 cut(s) 33, 49, 160, 251, 365, 371, 429
MslI CAYNNNNRTG 1 cut(s) 24
NdeII GATC 2 cut(s) 197, 416
NlaIII CATG 2 cut(s) 281, 416
NmuCI GTSAC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 160, 209
PkrI GCNGC 2 cut(s) 127, 151
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 260
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 2 cut(s) 126, 150
Sau3AI GATC 2 cut(s) 197, 416
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 326
SetI ASST 3 cut(s) 151, 328, 376
SfaNI GCATC 1 cut(s) 137
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 24
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 3 cut(s) 110, 232, 286
SspI AATATT 1 cut(s) 88
SspMI CTAG 2 cut(s) 132, 182
TaaI ACNGT 2 cut(s) 348, 361
TaqII GACCGA 1 cut(s) 277
TasI AATT 3 cut(s) 110, 232, 286
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 2 cut(s) 160, 209
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 2 cut(s) 125, 149
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 42, 201, 280
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 132, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.