Rorug01G0290300
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000197
Physical Location & Seq
Forward (+)
40626728 .. 40628719
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0290300.1

Sequence Viewer

Length: 879 bp
ATGGTCAGGATCCGCAAGAACTTGAAGGTGTCGCCGCTCCAGTTCTTCCCCAACGTAGCTCCTGAGGACCTGCAGCCCCACATCTGCAAGCTGAACCAGTCTCCTTGGGATTCGAGCCCCTGCCCTTTCGACCTCCTCCTCGACTCGTCGCCGCTCCAGTTCGAAGCTGGGGAGGGTTTTATCGGAAATGGGAGCTTGGGGGATTCTATTGCAGCTGTCGAGAGCGTTGCGTCGCCGATGGATATCGACAAGGCAGAAATGGCGACCGGCGATGTGTTGGATGACGTCGACAGAGCAATTGTGAGGTGTCAGAAGAACGACGGCAGGAGCTGGCAATGCAAGAAGGAAGCGAAAGAAGGCTTCTTATTTTGTGACCATCATATCCGAAGGTCGTCCTATGGTAACAACAACGTTACTAGCAATGGCAATATTCTTCCCTCCAACTTCGTGGCTTCGAAGAAGGACACGGCGGCAGCCCCGGCCAAGACGCTAGCCGGAACCCGCCGTGCCAGACCGAAGGCGGTGAAGAAGGGGGCGTCGTCGGCGAACCCGTATGAGTTCTACTACTATTCGGGGTTCGGCCCAAAATGGGGCCGAAAGAGAGGCAAGAAAGGCGAGGTGGTGGAGGAGGAGGAGGAGGCCAATAATATTGAGTCAGCAGCTGGAAAGGTTGCAACTTCTTGTAGTACTAGTAGTGCTAACACCGATCCCCAACCTTCTTCACCTCACAACGTTGGTAATGGGGATCAATTGGACTACATGGAAGACGACTTCGACGACGAGGATGGGAGCGACGAAGAAGGCGGGCCGAGGAGGATGAGGAGGCCGGTGAAGGCTCGATCCTTGATGTCCATAATTAATGTAAAAGCTCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

292

Amino Acids

31.88

Weight (kDa)

5.58

Isoelectric Point (pI)

66.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 101 - 134 3.2e-09 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 78
AccBSI CCGCTC 2 cut(s) 37, 154
AccI GTMKAC 1 cut(s) 288
AciI CCGC 7 cut(s) 13, 35, 152, 470, 502, 521, 804
AclI AACGTT 2 cut(s) 411, 732
AclWI GGATC 5 cut(s) 4, 17, 701, 753, 834
AcoI YGGCCR 1 cut(s) 480
AcyI GRCGYC 2 cut(s) 285, 536
AfaI GTAC 1 cut(s) 688
AfiI CCNNNNNNNGG 2 cut(s) 589, 590
AgsI TTSAA 1 cut(s) 25
AhlI ACTAGT 1 cut(s) 689
AluBI AGCT 8 cut(s) 59, 91, 167, 195, 215, 330, 662, 869
AluI AGCT 8 cut(s) 59, 91, 167, 195, 215, 330, 662, 869
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 5 cut(s) 4, 17, 701, 753, 834
AlwNI CAGNNNCTG 2 cut(s) 330, 662
AoxI GGCC 6 cut(s) 480, 580, 592, 639, 806, 824
ApeKI GCWGC 4 cut(s) 73, 212, 473, 659
AseI ATTAAT 1 cut(s) 858
AspS9I GGNCC 4 cut(s) 67, 581, 592, 806
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 535, 714, 841
AsuII TTCGAA 2 cut(s) 162, 455
AsuNHI GCTAGC 1 cut(s) 490
AvaII GGWCC 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 63
BamHI GGATCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 771
BbvI GCAGC 4 cut(s) 85, 224, 485, 671
BccI CCATC 3 cut(s) 232, 384, 779
BceAI ACGGC 3 cut(s) 337, 483, 489
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 105
BcuI ACTAGT 1 cut(s) 689
BfaI CTAG 3 cut(s) 417, 491, 690
BfmI CTRYAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 7 cut(s) 35, 74, 152, 213, 471, 474, 660
BlsI GCNGC 7 cut(s) 36, 75, 153, 214, 472, 475, 661
BmcAI AGTACT 1 cut(s) 688
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 4 cut(s) 67, 581, 592, 806
BmiI GGNNCC 3 cut(s) 11, 499, 593
BmrFI CCNGG 1 cut(s) 479
BmtI GCTAGC 1 cut(s) 494
BpiI GAAGAC 1 cut(s) 771
BpmI CTGGAG 2 cut(s) 23, 140
Bpu14I TTCGAA 2 cut(s) 162, 455
BpuEI CTTGAG 1 cut(s) 855
BpuMI CCSGG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 242
BsaHI GRCGYC 2 cut(s) 285, 536
BsaJI CCNNGG 3 cut(s) 104, 477, 809
Bsc4I CCNNNNNNNGG 2 cut(s) 589, 590
Bse118I RCCGGY 2 cut(s) 266, 826
Bse1I ACTGG 3 cut(s) 40, 97, 157
Bse21I CCTNAGG 1 cut(s) 63
Bse3DI GCAATG 2 cut(s) 341, 427
Bse8I GATNNNNATC 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 104, 477, 809
BseGI GGATG 3 cut(s) 286, 790, 822
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 589, 590
BseMI GCAATG 2 cut(s) 341, 427
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 3 cut(s) 40, 97, 157
BseRI GAGGAG 8 cut(s) 125, 128, 641, 644, 647, 650, 826, 835
BseXI GCAGC 4 cut(s) 85, 224, 485, 671
BseYI CCCAGC 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 6 cut(s) 482, 582, 594, 641, 808, 826
BsiEI CGRYCG 1 cut(s) 267
BsiSI CCGG 4 cut(s) 267, 479, 495, 827
BslI CCNNNNNNNGG 2 cut(s) 589, 590
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 6 cut(s) 482, 582, 594, 641, 808, 826
Bsp119I TTCGAA 2 cut(s) 162, 455
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 9, 706, 745, 839
BspACI CCGC 7 cut(s) 13, 35, 152, 470, 502, 521, 804
BspANI GGCC 6 cut(s) 482, 582, 594, 641, 808, 826
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 3 cut(s) 11, 499, 593
BspMAI CTGCAG 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 78
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 5 cut(s) 4, 17, 701, 753, 834
BspT104I TTCGAA 2 cut(s) 162, 455
BsrBI CCGCTC 2 cut(s) 37, 154
BsrDI GCAATG 2 cut(s) 341, 427
BsrFI RCCGGY 2 cut(s) 266, 826
BsrI ACTGG 3 cut(s) 40, 97, 157
BssAI RCCGGY 2 cut(s) 266, 826
BssECI CCNNGG 3 cut(s) 104, 477, 809
BssMI GATC 4 cut(s) 9, 706, 745, 839
BssNI GRCGYC 2 cut(s) 285, 536
BssT1I CCWWGG 1 cut(s) 104
BstACI GRCGYC 2 cut(s) 285, 536
BstBI TTCGAA 2 cut(s) 162, 455
BstC8I GCNNGC 4 cut(s) 89, 332, 492, 806
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 3 cut(s) 286, 790, 822
BstKTI GATC 4 cut(s) 12, 709, 748, 842
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 9, 706, 745, 839
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 5 cut(s) 260, 336, 479, 542, 612
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 85, 224, 485, 671
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 63
BsuRI GGCC 6 cut(s) 482, 582, 594, 641, 808, 826
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 3 cut(s) 286, 790, 822
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 4 cut(s) 89, 332, 492, 806
CaiI CAGNNNCTG 2 cut(s) 330, 662
Cfr10I RCCGGY 2 cut(s) 266, 826
Cfr13I GGNCC 4 cut(s) 67, 581, 592, 806
CseI GACGC 3 cut(s) 219, 496, 525
Csp6I GTAC 1 cut(s) 687
CviAII CATG 1 cut(s) 760
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 1 cut(s) 63
DpnI GATC 4 cut(s) 11, 708, 747, 841
DpnII GATC 4 cut(s) 9, 706, 745, 839
EaeI YGGCCR 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 119
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 67
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 763
FaiI YATR 5 cut(s) 381, 399, 555, 761, 854
FatI CATG 1 cut(s) 759
FauI CCCGC 2 cut(s) 509, 797
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 7 cut(s) 35, 74, 152, 213, 471, 474, 660
FokI GGATG 3 cut(s) 293, 797, 829
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 7 cut(s) 35, 74, 152, 213, 471, 474, 660
FspBI CTAG 3 cut(s) 417, 491, 690
GluI GCNGC 7 cut(s) 35, 74, 152, 213, 471, 474, 660
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 2 cut(s) 23, 140
HaeIII GGCC 6 cut(s) 482, 582, 594, 641, 808, 826
HapII CCGG 4 cut(s) 267, 479, 495, 827
HgaI GACGC 3 cut(s) 219, 496, 525
Hin1I GRCGYC 2 cut(s) 285, 536
Hin1II CATG 1 cut(s) 763
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 4 cut(s) 110, 143, 203, 653
HpaII CCGG 4 cut(s) 267, 479, 495, 827
HphI GGTGA 3 cut(s) 535, 714, 841
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 185, 312, 386
Hpy188III TCNNGA 4 cut(s) 7, 62, 220, 872
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 9 cut(s) 151, 235, 290, 323, 541, 544, 779, 782, 797
HpyCH4IV ACGT 4 cut(s) 54, 285, 411, 732
HpyCH4V TGCA 5 cut(s) 73, 87, 212, 339, 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 336, 479, 542, 612
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 4 cut(s) 54, 285, 411, 732
Hsp92I GRCGYC 2 cut(s) 285, 536
Hsp92II CATG 1 cut(s) 763
Kzo9I GATC 4 cut(s) 9, 706, 745, 839
LmnI GCTCC 6 cut(s) 42, 64, 159, 192, 327, 789
Lsp1109I GCAGC 4 cut(s) 85, 224, 485, 671
MaeI CTAG 3 cut(s) 417, 491, 690
MaeII ACGT 4 cut(s) 54, 285, 411, 732
MaeIII GTNAC 3 cut(s) 371, 401, 412
MalI GATC 4 cut(s) 11, 708, 747, 841
MbiI CCGCTC 2 cut(s) 37, 154
MboI GATC 4 cut(s) 9, 706, 745, 839
MboII GAAGA 8 cut(s) 37, 325, 425, 469, 538, 711, 776, 809
MfeI CAATTG 2 cut(s) 297, 749
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 3 cut(s) 297, 749, 855
MlyI GAGTC 2 cut(s) 137, 662
MmeI TCCRAC 2 cut(s) 258, 465
MseI TTAA 1 cut(s) 858
MspA1I CMGCKG 2 cut(s) 215, 662
MspI CCGG 4 cut(s) 267, 479, 495, 827
MspR9I CCNGG 1 cut(s) 479
MunI CAATTG 2 cut(s) 297, 749
MwoI GCNNNNNNNGC 5 cut(s) 260, 336, 479, 542, 612
NciI CCSGG 1 cut(s) 479
NdeII GATC 4 cut(s) 9, 706, 745, 839
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 1 cut(s) 763
NlaIV GGNNCC 3 cut(s) 11, 499, 593
NmeAIII GCCGAG 1 cut(s) 834
NmuCI GTSAC 1 cut(s) 371
NspV TTCGAA 2 cut(s) 162, 455
PcsI WCGNNNNNNNCGW 2 cut(s) 548, 774
PfeI GAWTC 2 cut(s) 110, 203
PkrI GCNGC 7 cut(s) 36, 75, 153, 214, 472, 475, 661
PleI GAGTC 2 cut(s) 137, 661
PpsI GAGTC 2 cut(s) 137, 661
PpuMI RGGWCCY 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 858
Psp1406I AACGTT 2 cut(s) 411, 732
Psp5II RGGWCCY 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 3 cut(s) 11, 499, 593
PspPI GGNCC 4 cut(s) 67, 581, 592, 806
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 75
PstNI CAGNNNCTG 2 cut(s) 330, 662
PsuI RGATCY 1 cut(s) 9
PvuII CAGCTG 2 cut(s) 215, 662
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
SalI GTCGAC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 7 cut(s) 35, 74, 152, 213, 471, 474, 660
Sau3AI GATC 4 cut(s) 9, 706, 745, 839
Sau96I GGNCC 4 cut(s) 67, 581, 592, 806
ScaI AGTACT 1 cut(s) 688
SchI GAGTC 2 cut(s) 137, 662
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 71
SfuI TTCGAA 2 cut(s) 162, 455
SinI GGWCC 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
SpeI ACTAGT 1 cut(s) 689
Sse9I AATT 3 cut(s) 297, 749, 855
SsiI CCGC 7 cut(s) 13, 35, 152, 470, 502, 521, 804
SspI AATATT 2 cut(s) 430, 649
SspMI CTAG 3 cut(s) 417, 491, 690
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 1 cut(s) 104
TaiI ACGT 4 cut(s) 57, 288, 414, 735
TaqII GACCGA 1 cut(s) 529
TasI AATT 3 cut(s) 297, 749, 855
TatI WGTACW 1 cut(s) 686
TauI GCSGC 3 cut(s) 37, 154, 473
TfiI GAWTC 2 cut(s) 110, 203
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 4 cut(s) 73, 212, 473, 659
Tsp45I GTSAC 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 67
VspI ATTAAT 1 cut(s) 858
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 3 cut(s) 417, 491, 690
ZraI GACGTC 1 cut(s) 286
ZrmI AGTACT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.