MD01G1094200.v1.1
NAC Family

NAC domain protein, IPR003441 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000197
Physical Location & Seq
Reverse (-)
20901977 .. 20903922
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1094200.v1.1.491

Sequence Viewer

Length: 975 bp
ATGGGAACATTGGGAAGCAACAGAAAAACAAGAGGTGGAGGGGCATCAGACCCAGTAGGGTTCAGATTCCACCCCACTCCGGAGGAACTGGTCGATCATTACTTGAAGCTCAAGAAACAGGACAAGGATTTCAAATGTGATCACATCGCTGAATTCGATGTCTGCAACTTCGACCCTTGGGATTTGGCTGCTCGCATTCCATCCGACGATATGGTGTGGTACTTCTTCAGCCCAAAGGATTACAAGTACATCAACAGCACCCGGTCCAACCGAACTACACCAGGAGGCCACTGGAAAATCACAGGCAAGGAGCGTGCGATCAAGGATCGGCATTCCAAAGCTGTCATTGGGAAGAAGAGGACCTTGACATTCTACCGACGTTGTCAGCCTAAACCCATAAAAACCGACTGGGTCATGCACGAGTTCTATCTCATTGATAGTGAAGCCATCTCTAATCCTAAGCTGCATCAGGATTTTGTTCTGTGTTGCATGAAGAAAAATTTCGATATGGAGGATACCTCAATCGGTGAAGTTGAACTTGGCAGCTACAGTGTGTCTAATGCTGAAGATCATGCTGCAGCTGTTGTGACTCCAGAGGATTACAGTTCCTCTACATACCTATCATCAGGATACATAGAGTTGGGAGATATTCCACAAGGCAATGCCAACATTGATGATTGCAATGCAATGCAATCACCATTTGGATATAATAATTATTCTTATCCCGATAAGAATGATATTTCAACCTGTGATGAAGGTGAACCTCCTAGCTTCACCATGTTTGATTTCGAAAATGAAGTTCCAGATCATATGTCTCAAGAGGTATGTCCTCCACGAGAAGAAAATCTGGAATTGTTCTTTTATCCACCTCAGCCGGAGGACTACACACTGGAGCCACTAATGAACATGACAGTGGGAGATGTTTTGCATGACAATAACTATATTGCATACAATGAGTTTTGGCCCCCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

325

Amino Acids

37.2

Weight (kDa)

4.8

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 143 9.5e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 79
AclWI GGATC 1 cut(s) 333
AcsI RAATTY 2 cut(s) 152, 499
AcuI CTGAAG 2 cut(s) 211, 585
AfaI GTAC 2 cut(s) 221, 248
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 4 cut(s) 106, 133, 536, 744
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
AluBI AGCT 6 cut(s) 109, 341, 463, 546, 581, 771
AluI AGCT 6 cut(s) 109, 341, 463, 546, 581, 771
Alw26I GTCTC 1 cut(s) 819
AlwI GGATC 1 cut(s) 333
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 2 cut(s) 286, 962
ApeKI GCWGC 5 cut(s) 188, 463, 543, 575, 578
ApoI RAATTY 2 cut(s) 152, 499
Asp700I GAANNNNTTC 1 cut(s) 500
AspS9I GGNCC 3 cut(s) 264, 360, 963
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 4 cut(s) 539, 687, 766, 770
AsuII TTCGAA 1 cut(s) 789
AvaII GGWCC 2 cut(s) 264, 360
BauI CACGAG 2 cut(s) 419, 834
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 5 cut(s) 175, 450, 555, 562, 590
BccI CCATC 2 cut(s) 208, 455
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 2 cut(s) 508, 623
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 819
BfaI CTAG 1 cut(s) 768
BfmI CTRYAG 2 cut(s) 547, 576
BfuI GTATCC 2 cut(s) 508, 623
BisI GCNGC 5 cut(s) 189, 464, 544, 576, 579
BlsI GCNGC 5 cut(s) 190, 465, 545, 577, 580
Bme1390I CCNGG 2 cut(s) 262, 282
Bme18I GGWCC 2 cut(s) 264, 360
BmgT120I GGNCC 3 cut(s) 264, 360, 963
BmiI GGNNCC 2 cut(s) 894, 965
BmrFI CCNGG 2 cut(s) 262, 282
BmrI ACTGGG 2 cut(s) 47, 418
BmsI GCATC 2 cut(s) 53, 475
BmuI ACTGGG 2 cut(s) 47, 418
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 2 cut(s) 576, 911
Bpu10I CCTNAGC 2 cut(s) 459, 870
Bpu14I TTCGAA 1 cut(s) 789
BpuEI CTTGAG 2 cut(s) 95, 801
BpuMI CCSGG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 5 cut(s) 53, 93, 296, 413, 894
Bse3DI GCAATG 3 cut(s) 667, 688, 693
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 3 cut(s) 667, 688, 693
BseMII CTCAG 1 cut(s) 884
BseNI ACTGG 5 cut(s) 53, 93, 296, 413, 894
BseXI GCAGC 5 cut(s) 175, 450, 555, 562, 590
BshFI GGCC 2 cut(s) 288, 964
BsiSI CCGG 3 cut(s) 80, 262, 875
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 819
BsmI GAATGC 2 cut(s) 195, 331
BsnI GGCC 2 cut(s) 288, 964
Bsp119I TTCGAA 1 cut(s) 789
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 6 cut(s) 94, 139, 318, 325, 568, 805
BspANI GGCC 2 cut(s) 288, 964
BspCNI CTCAG 1 cut(s) 883
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 894, 965
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 1 cut(s) 333
BspT104I TTCGAA 1 cut(s) 789
BsrDI GCAATG 3 cut(s) 667, 688, 693
BsrI ACTGG 5 cut(s) 53, 93, 296, 413, 894
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 6 cut(s) 94, 139, 318, 325, 568, 805
BssSI CACGAG 2 cut(s) 419, 834
BssT1I CCWWGG 1 cut(s) 176
Bst2BI CACGAG 2 cut(s) 419, 834
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 3 cut(s) 551, 605, 913
Bst6I CTCTTC 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 789
BstC8I GCNNGC 2 cut(s) 193, 315
BstDEI CTNAG 2 cut(s) 459, 870
BstF5I GGATG 1 cut(s) 200
BstKTI GATC 6 cut(s) 97, 142, 321, 328, 571, 808
BstMAI GTCTC 1 cut(s) 819
BstMBI GATC 6 cut(s) 94, 139, 318, 325, 568, 805
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 260, 280
BstSFI CTRYAG 2 cut(s) 547, 576
BstV1I GCAGC 5 cut(s) 175, 450, 555, 562, 590
BsuI GTATCC 2 cut(s) 508, 623
BsuRI GGCC 2 cut(s) 288, 964
BtgZI GCGATG 1 cut(s) 130
BtsCI GGATG 1 cut(s) 200
BtsIMutI CAGTG 4 cut(s) 289, 556, 887, 918
Cac8I GCNNGC 2 cut(s) 193, 315
Cfr13I GGNCC 3 cut(s) 264, 360, 963
Csp6I GTAC 2 cut(s) 220, 247
CviAII CATG 6 cut(s) 415, 490, 572, 778, 907, 929
CviQI GTAC 2 cut(s) 220, 247
DdeI CTNAG 2 cut(s) 459, 870
DpnI GATC 6 cut(s) 96, 141, 320, 327, 570, 807
DpnII GATC 6 cut(s) 94, 139, 318, 325, 568, 805
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 264, 360
Eco57I CTGAAG 2 cut(s) 211, 585
EcoO109I RGGNCCY 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 6 cut(s) 418, 493, 575, 781, 910, 932
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 522, 554
FatI CATG 6 cut(s) 414, 489, 571, 777, 906, 928
FauNDI CATATG 1 cut(s) 810
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 5 cut(s) 189, 464, 544, 576, 579
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 5 cut(s) 189, 464, 544, 576, 579
FspBI CTAG 1 cut(s) 768
GluI GCNGC 5 cut(s) 189, 464, 544, 576, 579
GsuI CTGGAG 2 cut(s) 576, 911
HaeIII GGCC 2 cut(s) 288, 964
HapII CCGG 3 cut(s) 80, 262, 875
Hin1II CATG 6 cut(s) 418, 493, 575, 781, 910, 932
HinfI GANTC 2 cut(s) 66, 589
HpaII CCGG 3 cut(s) 80, 262, 875
HphI GGTGA 4 cut(s) 539, 687, 766, 770
Hpy166II GTNNAC 1 cut(s) 761
Hpy188I TCNGA 3 cut(s) 49, 65, 205
Hpy188III TCNNGA 9 cut(s) 80, 112, 470, 593, 627, 725, 803, 818, 848
Hpy8I GTNNAC 1 cut(s) 761
Hpy99I CGWCG 2 cut(s) 209, 381
HpyAV CCTTC 1 cut(s) 749
HpyCH4III ACNGT 3 cut(s) 551, 605, 913
HpyCH4IV ACGT 1 cut(s) 379
HpyF3I CTNAG 2 cut(s) 459, 870
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 6 cut(s) 418, 493, 575, 781, 910, 932
Kpn2I TCCGGA 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 6 cut(s) 94, 139, 318, 325, 568, 805
LmnI GCTCC 2 cut(s) 310, 892
Lsp1109I GCAGC 5 cut(s) 175, 450, 555, 562, 590
LweI GCATC 2 cut(s) 53, 475
MaeI CTAG 1 cut(s) 768
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 586
MalI GATC 6 cut(s) 96, 141, 320, 327, 570, 807
MboI GATC 6 cut(s) 94, 139, 318, 325, 568, 805
MboII GAAGA 6 cut(s) 217, 364, 367, 505, 578, 851
MluCI AATT 5 cut(s) 152, 499, 712, 851, 969
MlyI GAGTC 1 cut(s) 583
MmeI TCCRAC 2 cut(s) 228, 291
MroI TCCGGA 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 500
MslI CAYNNNNRTG 1 cut(s) 911
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 3 cut(s) 80, 262, 875
MspR9I CCNGG 2 cut(s) 262, 282
Mva1269I GAATGC 2 cut(s) 195, 331
MvaI CCWGG 1 cut(s) 282
NciI CCSGG 1 cut(s) 262
NdeI CATATG 1 cut(s) 810
NdeII GATC 6 cut(s) 94, 139, 318, 325, 568, 805
NlaIII CATG 6 cut(s) 418, 493, 575, 781, 910, 932
NlaIV GGNNCC 2 cut(s) 894, 965
NmuCI GTSAC 1 cut(s) 586
NspV TTCGAA 1 cut(s) 789
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 2 cut(s) 195, 331
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 2 cut(s) 381, 410
PkrI GCNGC 5 cut(s) 190, 465, 545, 577, 580
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 894, 965
PspPI GGNCC 3 cut(s) 264, 360, 963
PspPPI RGGWCCY 1 cut(s) 360
PstI CTGCAG 1 cut(s) 580
PsyI GACNNNGTC 2 cut(s) 381, 410
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 2 cut(s) 221, 248
RsaNI GTAC 2 cut(s) 220, 247
RseI CAYNNNNRTG 1 cut(s) 911
SatI GCNGC 5 cut(s) 189, 464, 544, 576, 579
Sau3AI GATC 6 cut(s) 94, 139, 318, 325, 568, 805
Sau96I GGNCC 3 cut(s) 264, 360, 963
SchI GAGTC 1 cut(s) 583
ScrFI CCNGG 2 cut(s) 262, 282
SfaNI GCATC 2 cut(s) 53, 475
SfcI CTRYAG 2 cut(s) 547, 576
SfuI TTCGAA 1 cut(s) 789
SinI GGWCC 2 cut(s) 264, 360
SmiMI CAYNNNNRTG 1 cut(s) 911
SmlI CTYRAG 2 cut(s) 110, 816
SmoI CTYRAG 2 cut(s) 110, 816
Sse9I AATT 5 cut(s) 152, 499, 712, 851, 969
SspMI CTAG 1 cut(s) 768
StyD4I CCNGG 2 cut(s) 260, 280
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 3 cut(s) 551, 605, 913
TaiI ACGT 1 cut(s) 382
TaqI TCGA 5 cut(s) 93, 156, 171, 504, 789
TasI AATT 5 cut(s) 152, 499, 712, 851, 969
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 66
TscAI CASTG 4 cut(s) 296, 556, 894, 918
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 5 cut(s) 188, 463, 543, 575, 578
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 4 cut(s) 506, 768, 810, 917
TspRI CASTG 4 cut(s) 296, 556, 894, 918
Tth111I GACNNNGTC 2 cut(s) 381, 410
VpaK11BI GGWCC 2 cut(s) 264, 360
XapI RAATTY 2 cut(s) 152, 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 500
XspI CTAG 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.