MD01G1093900.v1.1
NAC Family

NAC domain protein, IPR003441 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000197
Physical Location & Seq
Reverse (-)
20870911 .. 20873250
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1093900.v1.1.491

Sequence Viewer

Length: 981 bp
ATGGGAACATTGGGATGCAACAGAAAAACAAGAGGAGGAGGGGCATCAGACCCAGTAGGGTTCAGATTCCACCCCACTCCGGAGGAACTGGTGGACCATTACTTGAAGCTCAAGAAACAGGACAAGGATTTCAAATGTGATCACATCCCTGAATTCGATGTCTGCAACTTCGACCCTTGGGATTTGGCTGCTCGCATTGCATCCGACGATATGGTGTGGTACTTCTTCAGCCCAAAGGATTACAAGTACATCAACAGCACCCGGTCCAACCGAACTACACCAGGAGGCCACTGGAAAATCACAGGCAAGGAGCGTGCGATCAGGGCTCGGCAGTCCAAAGCTGTCATTGGGAAGAAGAGGACCTTGACATTCTACCGACGTTGTCATCCTAAACCCATAAAAACCGACTGGGTCATGCACGAGTTCTATCTCATTGATAGTGAAGCCATCTCTAATCCTAAGCTGCATCAGGATTTTGTTCTGTGTTGCATGAAGAAAAATTCCGATATGGAGGATACCTCAATCGGTGAAGTTGAACTTGGCAGCTACAGTGTGTCTAATGCTGAAGATCATGCTGCAGCTGTTGTGACTCCAGAGTCACAGGATTACGGTTCCTCTACATACCTATCAGCAGGATACATAGAGTTGGGAGATATTCCACAAGGCAATGCCAAAATTGATGATTGCAATGCAATGCAATCACCATTTGGATATAATAATTATTCTTATCCCGATAAGAATGATACTTCAACCTGTGATGAAGGTGAACCTCCTAGCTTCACCATGTCTGATTTCGAAAATGAAGTTCCAGATCATATGTCTCAAGAGGTATGTCCTCCACGAGAAGAAAATCTGGAATTGTTCTTTTATCCACCTCAGCCAGAGGGCTACAATCTGGAGCCACTAATGAACATGACAGTGGGAGATGTTTTGCATGACAATAACTATATTGCATACAATGTGTTTTGGTCCCCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

327

Amino Acids

37.16

Weight (kDa)

4.98

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 143 4.3e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 595
AccIII TCCGGA 1 cut(s) 79
AcsI RAATTY 2 cut(s) 152, 499
AcuI CTGAAG 2 cut(s) 211, 585
AfaI GTAC 2 cut(s) 221, 248
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 4 cut(s) 106, 133, 536, 750
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
AluBI AGCT 6 cut(s) 109, 341, 463, 546, 581, 777
AluI AGCT 6 cut(s) 109, 341, 463, 546, 581, 777
Alw26I GTCTC 1 cut(s) 825
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 5 cut(s) 188, 463, 543, 575, 578
ApoI RAATTY 2 cut(s) 152, 499
AspS9I GGNCC 4 cut(s) 94, 264, 360, 969
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 4 cut(s) 539, 693, 772, 776
AsuII TTCGAA 1 cut(s) 795
AvaII GGWCC 4 cut(s) 94, 264, 360, 969
BanII GRGCYC 1 cut(s) 328
BauI CACGAG 2 cut(s) 419, 840
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 5 cut(s) 175, 450, 555, 562, 590
BccI CCATC 1 cut(s) 455
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 2 cut(s) 508, 629
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 825
BfaI CTAG 1 cut(s) 774
BfmI CTRYAG 2 cut(s) 547, 576
BfuI GTATCC 2 cut(s) 508, 629
BisI GCNGC 5 cut(s) 189, 464, 544, 576, 579
BlsI GCNGC 5 cut(s) 190, 465, 545, 577, 580
Bme1390I CCNGG 2 cut(s) 262, 282
Bme18I GGWCC 4 cut(s) 94, 264, 360, 969
BmgT120I GGNCC 4 cut(s) 94, 264, 360, 969
BmiI GGNNCC 3 cut(s) 613, 900, 971
BmrFI CCNGG 2 cut(s) 262, 282
BmrI ACTGGG 2 cut(s) 47, 418
BmsI GCATC 4 cut(s) 5, 53, 209, 475
BmuI ACTGGG 2 cut(s) 47, 418
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 2 cut(s) 576, 917
Bpu10I CCTNAGC 2 cut(s) 459, 876
Bpu14I TTCGAA 1 cut(s) 795
BpuEI CTTGAG 2 cut(s) 95, 807
BpuMI CCSGG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 4 cut(s) 53, 93, 296, 413
Bse3DI GCAATG 4 cut(s) 195, 673, 694, 699
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 4 cut(s) 20, 144, 200, 385
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 4 cut(s) 195, 673, 694, 699
BseMII CTCAG 1 cut(s) 890
BseNI ACTGG 4 cut(s) 53, 93, 296, 413
BseRI GAGGAG 2 cut(s) 48, 51
BseXI GCAGC 5 cut(s) 175, 450, 555, 562, 590
BshFI GGCC 1 cut(s) 288
BsiSI CCGG 2 cut(s) 80, 262
BslFI GGGAC 1 cut(s) 955
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 825
BsmFI GGGAC 1 cut(s) 955
BsnI GGCC 1 cut(s) 288
Bsp119I TTCGAA 1 cut(s) 795
Bsp1286I GDGCHC 1 cut(s) 328
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 4 cut(s) 139, 318, 568, 811
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 889
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 613, 900, 971
BspMAI CTGCAG 1 cut(s) 580
BspT104I TTCGAA 1 cut(s) 795
BsrDI GCAATG 4 cut(s) 195, 673, 694, 699
BsrI ACTGG 4 cut(s) 53, 93, 296, 413
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 4 cut(s) 139, 318, 568, 811
BssSI CACGAG 2 cut(s) 419, 840
BssT1I CCWWGG 1 cut(s) 176
Bst2BI CACGAG 2 cut(s) 419, 840
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 3 cut(s) 551, 611, 919
Bst6I CTCTTC 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 795
BstC8I GCNNGC 2 cut(s) 193, 315
BstDEI CTNAG 2 cut(s) 459, 876
BstF5I GGATG 4 cut(s) 20, 144, 200, 385
BstKTI GATC 4 cut(s) 142, 321, 571, 814
BstMAI GTCTC 1 cut(s) 825
BstMBI GATC 4 cut(s) 139, 318, 568, 811
BstMWI GCNNNNNNNGC 2 cut(s) 197, 323
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 260, 280
BstSFI CTRYAG 2 cut(s) 547, 576
BstV1I GCAGC 5 cut(s) 175, 450, 555, 562, 590
BsuI GTATCC 2 cut(s) 508, 629
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 4 cut(s) 20, 144, 200, 385
BtsIMutI CAGTG 3 cut(s) 289, 556, 924
Cac8I GCNNGC 2 cut(s) 193, 315
Cfr13I GGNCC 4 cut(s) 94, 264, 360, 969
Csp6I GTAC 2 cut(s) 220, 247
CviAII CATG 6 cut(s) 415, 490, 572, 784, 913, 935
CviQI GTAC 2 cut(s) 220, 247
DdeI CTNAG 2 cut(s) 459, 876
DpnI GATC 4 cut(s) 141, 320, 570, 813
DpnII GATC 4 cut(s) 139, 318, 568, 811
DrdI GACNNNNNNGTC 1 cut(s) 595
DseDI GACNNNNNNGTC 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 328
Eco47I GGWCC 4 cut(s) 94, 264, 360, 969
Eco57I CTGAAG 2 cut(s) 211, 585
EcoO109I RGGNCCY 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 6 cut(s) 418, 493, 575, 787, 916, 938
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 522, 554
FaqI GGGAC 1 cut(s) 955
FatI CATG 6 cut(s) 414, 489, 571, 783, 912, 934
FauNDI CATATG 1 cut(s) 816
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 5 cut(s) 189, 464, 544, 576, 579
FokI GGATG 4 cut(s) 27, 131, 187, 372
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 5 cut(s) 189, 464, 544, 576, 579
FspBI CTAG 1 cut(s) 774
GluI GCNGC 5 cut(s) 189, 464, 544, 576, 579
GsuI CTGGAG 2 cut(s) 576, 917
HaeIII GGCC 1 cut(s) 288
HapII CCGG 2 cut(s) 80, 262
Hin1II CATG 6 cut(s) 418, 493, 575, 787, 916, 938
HinfI GANTC 3 cut(s) 66, 589, 596
HpaII CCGG 2 cut(s) 80, 262
HphI GGTGA 4 cut(s) 539, 693, 772, 776
Hpy166II GTNNAC 2 cut(s) 94, 767
Hpy188I TCNGA 5 cut(s) 49, 65, 205, 505, 790
Hpy188III TCNNGA 9 cut(s) 80, 112, 470, 593, 731, 809, 824, 854, 896
Hpy8I GTNNAC 2 cut(s) 94, 767
Hpy99I CGWCG 2 cut(s) 209, 381
HpyAV CCTTC 1 cut(s) 755
HpyCH4III ACNGT 3 cut(s) 551, 611, 919
HpyCH4IV ACGT 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 323
HpyF3I CTNAG 2 cut(s) 459, 876
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 6 cut(s) 418, 493, 575, 787, 916, 938
Kpn2I TCCGGA 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 4 cut(s) 139, 318, 568, 811
LmnI GCTCC 2 cut(s) 310, 898
Lsp1109I GCAGC 5 cut(s) 175, 450, 555, 562, 590
LweI GCATC 4 cut(s) 5, 53, 209, 475
MaeI CTAG 1 cut(s) 774
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 2 cut(s) 586, 597
MalI GATC 4 cut(s) 141, 320, 570, 813
MboI GATC 4 cut(s) 139, 318, 568, 811
MboII GAAGA 6 cut(s) 217, 364, 367, 505, 578, 857
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 6 cut(s) 152, 499, 675, 718, 857, 975
MlyI GAGTC 2 cut(s) 583, 605
MmeI TCCRAC 2 cut(s) 228, 291
MroI TCCGGA 1 cut(s) 79
MslI CAYNNNNRTG 2 cut(s) 13, 917
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 2 cut(s) 80, 262
MspR9I CCNGG 2 cut(s) 262, 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 197, 323
NciI CCSGG 1 cut(s) 262
NdeI CATATG 1 cut(s) 816
NdeII GATC 4 cut(s) 139, 318, 568, 811
NlaIII CATG 6 cut(s) 418, 493, 575, 787, 916, 938
NlaIV GGNNCC 3 cut(s) 613, 900, 971
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 586, 597
NspV TTCGAA 1 cut(s) 795
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 2 cut(s) 381, 410
PkrI GCNGC 5 cut(s) 190, 465, 545, 577, 580
PleI GAGTC 2 cut(s) 583, 604
PpsI GAGTC 2 cut(s) 583, 604
PpuMI RGGWCCY 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 613, 900, 971
PspPI GGNCC 4 cut(s) 94, 264, 360, 969
PspPPI RGGWCCY 1 cut(s) 360
PstI CTGCAG 1 cut(s) 580
PsyI GACNNNGTC 2 cut(s) 381, 410
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 2 cut(s) 221, 248
RsaNI GTAC 2 cut(s) 220, 247
RseI CAYNNNNRTG 2 cut(s) 13, 917
SatI GCNGC 5 cut(s) 189, 464, 544, 576, 579
Sau3AI GATC 4 cut(s) 139, 318, 568, 811
Sau96I GGNCC 4 cut(s) 94, 264, 360, 969
SchI GAGTC 2 cut(s) 583, 605
ScrFI CCNGG 2 cut(s) 262, 282
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 4 cut(s) 5, 53, 209, 475
SfcI CTRYAG 2 cut(s) 547, 576
SfuI TTCGAA 1 cut(s) 795
SinI GGWCC 4 cut(s) 94, 264, 360, 969
SmiMI CAYNNNNRTG 2 cut(s) 13, 917
SmlI CTYRAG 2 cut(s) 110, 822
SmoI CTYRAG 2 cut(s) 110, 822
Sse9I AATT 6 cut(s) 152, 499, 675, 718, 857, 975
SspMI CTAG 1 cut(s) 774
StyD4I CCNGG 2 cut(s) 260, 280
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 3 cut(s) 551, 611, 919
TaiI ACGT 1 cut(s) 382
TaqI TCGA 3 cut(s) 156, 171, 795
TasI AATT 6 cut(s) 152, 499, 675, 718, 857, 975
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 66
TscAI CASTG 3 cut(s) 296, 556, 924
TseFI GTSAC 2 cut(s) 586, 597
TseI GCWGC 5 cut(s) 188, 463, 543, 575, 578
Tsp45I GTSAC 2 cut(s) 586, 597
TspDTI ATGAA 4 cut(s) 506, 774, 816, 923
TspRI CASTG 3 cut(s) 296, 556, 924
Tth111I GACNNNGTC 2 cut(s) 381, 410
VpaK11BI GGWCC 4 cut(s) 94, 264, 360, 969
XapI RAATTY 2 cut(s) 152, 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XspI CTAG 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.