Rh1AG064400
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000197
Physical Location & Seq
Reverse (-)
10714277 .. 10719669
5393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG064400.1

Sequence Viewer

Length: 963 bp
ATGGAGTCACACCTGAATAAGATGAAGATGCTGAGACATCAAAAAATACTAAAGGAGGCAAGCCACCGTAACGGGGACCATGACCTCCAAAAAGAAGTATTTATTGATGATCATATGGAAACTCAGCCACCTGTTGTTCTTCCCTCAAAAATGGAGGCAAACATAGCAGTTGTGTTGGGGACTGATACAGAGGCTCAGGACATGGAGTGGTTCTTCTTCACCAGAAAGTATTACAAGTACAACAAAAGCTCTAGCTCGAATCGGAGCACGAAGAAGGGATACTGGAAAATCACAGGCAAAGAGCGTGGGATTAAGGCTCGACGATCCAAAGCTGTGATTGGGAGCAAGAGGACATTGACTTTTTACCAGGATCGTGTGCCGAAATCGAATAAGACCAGCTGGGTCATTCTTGAGTACTATCTTCCTGGAAATGGAGTTATTTCGTATCTGAAGCAGGCCCAGGGCGACTTTGTTATCTGTCACTTGATGATTAAATCAGATAAGAAGGATTCTTCGCGCAGTAACGAAGGAGAACCCGGTAACGCAGGTGTGTCGAATTGTGAAAATCAAGCTGCTGATGAAATGGATCAAGAGGCACAGGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCAGGATGACCGCTGCTCTTCAGCACTGTGGTCACGGGCATCCCACGAGCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATGATTGTAGTGAGTTGCAATCACCATTTGGAGATGGTGATTCTTGTTTTCTAGACGGGAATGAAGTTTCAACCTGTGATGAATATGAGATTGTGTATGATGTGTTTCCACAGCTATGTGATCCGCCGGAAAAAACTCTGGATTCACTCTTACGTCCACCTCAGCAACAAGATTACCGCCCCTCCATACTGCACTCACCAATATACATAAAGCTGGGAAGTGTTCCACATCTGCTTCAGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

320

Amino Acids

36.49

Weight (kDa)

5.73

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 63 - 140 1.5e-18 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 536
Acc36I ACCTGC 1 cut(s) 536
AccB7I CCANNNNNTGG 1 cut(s) 685
AccII CGCG 1 cut(s) 517
AciI CCGC 3 cut(s) 646, 842, 895
AclWI GGATC 4 cut(s) 318, 378, 594, 833
AcuI CTGAAG 3 cut(s) 470, 639, 938
AfaI GTAC 2 cut(s) 239, 416
AfiI CCNNNNNNNGG 3 cut(s) 73, 431, 685
AgsI TTSAA 1 cut(s) 789
AjnI CCWGG 3 cut(s) 366, 424, 459
AluBI AGCT 9 cut(s) 249, 255, 332, 399, 572, 685, 692, 832, 931
AluI AGCT 9 cut(s) 249, 255, 332, 399, 572, 685, 692, 832, 931
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 4 cut(s) 318, 378, 594, 833
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 2 cut(s) 572, 648
Asp700I GAANNNNTTC 1 cut(s) 693
AspLEI GCGC 1 cut(s) 519
AspS9I GGNCC 2 cut(s) 76, 457
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 4 cut(s) 211, 732, 767, 906
AvaII GGWCC 1 cut(s) 76
AxyI CCTNAGG 1 cut(s) 636
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BauI CACGAG 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 269
BbvCI CCTCAGC 2 cut(s) 630, 879
BbvI GCAGC 2 cut(s) 559, 635
BccI CCATC 2 cut(s) 630, 746
BceAI ACGGC 1 cut(s) 943
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 3 cut(s) 368, 426, 461
BciVI GTATCC 1 cut(s) 272
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 2 cut(s) 252, 770
BfuAI ACCTGC 1 cut(s) 536
BfuI GTATCC 1 cut(s) 272
BisI GCNGC 2 cut(s) 573, 649
BlsI GCNGC 2 cut(s) 574, 650
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 4 cut(s) 368, 426, 461, 537
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 76, 457
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 4 cut(s) 368, 426, 461, 537
BmsI GCATC 2 cut(s) 18, 683
Bpu10I CCTNAGC 3 cut(s) 195, 630, 879
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 537
BsaJI CCNNGG 2 cut(s) 459, 460
BsaXI ACNNNNNCTCC 2 cut(s) 884, 914
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 431, 685
Bse1I ACTGG 1 cut(s) 287
Bse21I CCTNAGG 1 cut(s) 636
BseBI CCWGG 3 cut(s) 368, 426, 461
BseDI CCNNGG 2 cut(s) 459, 460
BseGI GGATG 2 cut(s) 646, 674
BseLI CCNNNNNNNGG 3 cut(s) 73, 431, 685
BseMII CTCAG 6 cut(s) 23, 137, 209, 644, 650, 893
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 1 cut(s) 623
BseXI GCAGC 2 cut(s) 559, 635
BseYI CCCAGC 2 cut(s) 399, 931
BsgI GTGCAG 1 cut(s) 893
Bsh1236I CGCG 1 cut(s) 517
BshFI GGCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 2 cut(s) 537, 845
BslFI GGGAC 2 cut(s) 89, 193
BslI CCNNNNNNNGG 3 cut(s) 73, 431, 685
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 89, 193
BsnI GGCC 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 5 cut(s) 109, 323, 370, 586, 838
BspACI CCGC 3 cut(s) 646, 842, 895
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 6 cut(s) 24, 136, 208, 643, 649, 892
BspFNI CGCG 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 4 cut(s) 318, 378, 594, 833
BspQI GCTCTTC 1 cut(s) 658
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 459, 460
BssMI GATC 5 cut(s) 109, 323, 370, 586, 838
BssSI CACGAG 1 cut(s) 680
Bst2BI CACGAG 1 cut(s) 680
Bst2UI CCWGG 3 cut(s) 368, 426, 461
Bst4CI ACNGT 2 cut(s) 68, 663
Bst6I CTCTTC 2 cut(s) 598, 658
BstC8I GCNNGC 2 cut(s) 61, 456
BstDEI CTNAG 6 cut(s) 32, 123, 195, 630, 636, 879
BstF5I GGATG 2 cut(s) 646, 674
BstFNI CGCG 1 cut(s) 517
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 5 cut(s) 112, 326, 373, 589, 841
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 5 cut(s) 109, 323, 370, 586, 838
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 3 cut(s) 368, 426, 461
BstSCI CCNGG 4 cut(s) 366, 424, 459, 535
BstUI CGCG 1 cut(s) 517
BstV1I GCAGC 2 cut(s) 559, 635
Bsu36I CCTNAGG 1 cut(s) 636
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 458
BtsCI GGATG 2 cut(s) 646, 674
BtsIMutI CAGTG 1 cut(s) 659
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 61, 456
CfoI GCGC 1 cut(s) 519
Cfr13I GGNCC 2 cut(s) 76, 457
Csp6I GTAC 2 cut(s) 238, 415
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 2 cut(s) 80, 202
CviQI GTAC 2 cut(s) 238, 415
DdeI CTNAG 6 cut(s) 32, 123, 195, 630, 636, 879
DpnI GATC 5 cut(s) 111, 325, 372, 588, 840
DpnII GATC 5 cut(s) 109, 323, 370, 586, 838
Eam1104I CTCTTC 2 cut(s) 598, 658
EarI CTCTTC 2 cut(s) 598, 658
EciI GGCGGA 1 cut(s) 831
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 3 cut(s) 470, 639, 938
Eco81I CCTNAGG 1 cut(s) 636
EcoRII CCWGG 3 cut(s) 366, 424, 459
FaeI CATG 2 cut(s) 83, 205
FaqI GGGAC 2 cut(s) 89, 193
FatI CATG 2 cut(s) 79, 201
FauNDI CATATG 1 cut(s) 114
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 573, 649
FokI GGATG 2 cut(s) 653, 661
Fsp4HI GCNGC 2 cut(s) 573, 649
FspBI CTAG 2 cut(s) 252, 770
GlaI GCGC 1 cut(s) 518
GluI GCNGC 2 cut(s) 573, 649
GsaI CCCAGC 2 cut(s) 403, 935
HaeIII GGCC 1 cut(s) 458
HapII CCGG 2 cut(s) 537, 845
HhaI GCGC 1 cut(s) 519
Hin1II CATG 2 cut(s) 83, 205
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HinfI GANTC 5 cut(s) 5, 259, 509, 758, 860
HpaII CCGG 2 cut(s) 537, 845
HphI GGTGA 4 cut(s) 211, 732, 767, 906
Hpy166II GTNNAC 1 cut(s) 875
Hpy188I TCNGA 3 cut(s) 264, 450, 499
Hpy188III TCNNGA 6 cut(s) 197, 410, 590, 638, 770, 857
Hpy8I GTNNAC 1 cut(s) 875
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 3 cut(s) 268, 499, 521
HpyCH4III ACNGT 2 cut(s) 68, 663
HpyCH4IV ACGT 1 cut(s) 871
HpyCH4V TGCA 3 cut(s) 700, 736, 910
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 6 cut(s) 32, 123, 195, 630, 636, 879
HpySE526I ACGT 1 cut(s) 871
Hsp92II CATG 2 cut(s) 83, 205
HspAI GCGC 1 cut(s) 517
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 5 cut(s) 109, 323, 370, 586, 838
LguI GCTCTTC 1 cut(s) 658
LmnI GCTCC 2 cut(s) 264, 342
Lsp1109I GCAGC 2 cut(s) 559, 635
LweI GCATC 2 cut(s) 18, 683
MaeI CTAG 2 cut(s) 252, 770
MaeII ACGT 1 cut(s) 871
MaeIII GTNAC 6 cut(s) 6, 68, 479, 521, 539, 666
MalI GATC 5 cut(s) 111, 325, 372, 588, 840
MboI GATC 5 cut(s) 109, 323, 370, 586, 838
MboII GAAGA 9 cut(s) 37, 131, 205, 208, 283, 413, 504, 615, 645
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 1 cut(s) 556
MlyI GAGTC 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 2 cut(s) 312, 492
MslI CAYNNNNRTG 1 cut(s) 832
MspA1I CMGCKG 2 cut(s) 399, 648
MspI CCGG 2 cut(s) 537, 845
MspR9I CCNGG 4 cut(s) 368, 426, 461, 537
MvaI CCWGG 3 cut(s) 368, 426, 461
MvnI CGCG 1 cut(s) 517
MwoI GCNNNNNNNGC 1 cut(s) 164
NciI CCSGG 1 cut(s) 537
NdeI CATATG 1 cut(s) 114
NdeII GATC 5 cut(s) 109, 323, 370, 586, 838
NlaIII CATG 2 cut(s) 83, 205
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 3 cut(s) 6, 479, 666
PaqCI CACCTGC 1 cut(s) 536
PasI CCCWGGG 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 658
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 4 cut(s) 259, 509, 758, 860
PflMI CCANNNNNTGG 1 cut(s) 685
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 2 cut(s) 574, 650
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 366, 424, 459
PspFI CCCAGC 2 cut(s) 399, 931
PspGI CCWGG 3 cut(s) 366, 424, 459
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 2 cut(s) 76, 457
PvuII CAGCTG 1 cut(s) 399
RsaI GTAC 2 cut(s) 239, 416
RsaNI GTAC 2 cut(s) 238, 415
RseI CAYNNNNRTG 1 cut(s) 832
SapI GCTCTTC 1 cut(s) 658
SaqAI TTAA 2 cut(s) 312, 492
SatI GCNGC 2 cut(s) 573, 649
Sau3AI GATC 5 cut(s) 109, 323, 370, 586, 838
Sau96I GGNCC 2 cut(s) 76, 457
ScaI AGTACT 1 cut(s) 416
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 4 cut(s) 368, 426, 461, 537
SduI GDGCHC 1 cut(s) 269
SfaNI GCATC 2 cut(s) 18, 683
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 832
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 1 cut(s) 556
SsiI CCGC 3 cut(s) 646, 842, 895
SspMI CTAG 2 cut(s) 252, 770
StyD4I CCNGG 4 cut(s) 366, 424, 459, 535
TaaI ACNGT 2 cut(s) 68, 663
TaiI ACGT 1 cut(s) 874
TaqI TCGA 4 cut(s) 257, 319, 386, 554
TasI AATT 1 cut(s) 556
TatI WGTACW 2 cut(s) 237, 414
TfiI GAWTC 4 cut(s) 259, 509, 758, 860
Tru1I TTAA 2 cut(s) 312, 492
Tru9I TTAA 2 cut(s) 312, 492
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 3 cut(s) 6, 479, 666
TseI GCWGC 2 cut(s) 572, 648
Tsp45I GTSAC 3 cut(s) 6, 479, 666
TspDTI ATGAA 4 cut(s) 38, 594, 795, 813
TspRI CASTG 1 cut(s) 666
Van91I CCANNNNNTGG 1 cut(s) 685
VpaK11BI GGWCC 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 769
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 2 cut(s) 252, 770
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.