Rw1G026570
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000197
Physical Location & Seq
Reverse (-)
53723841 .. 53725098
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026570.1

Sequence Viewer

Length: 705 bp
ATGGAGTTGTTCTTCTTCACCAGAAAGGCTTATAAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACGAAGAAGATCCACTGGAAAATCACAGGGAAGGAGCGTGGGATTAAATCTCAACGATCCAAAGCTGTTATCGGGAAGAAGAGGACATTGACTTTTTACCAGGGGCGTGCGCCGAAATCGAAGAAGACCACCTGGGTTATTCATGAGCACTATCTTCCTGGAGATGGAGTTGCTTCGTATCCGAAGCAGGCCCAGGGTGACTTTGTTATCTGTCTCTTGAAGATTAGATCAGATAGGAAGGATTCTCCGGTCAGTAATGAAGGAGAAGCCAAAAGCACGAGTGTGTCTGAAATGAATCAAGAGGGAAATGAGAAGTTGCTATTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCAGTCACCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATGTCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAGTGATTCTTATCTATTAGATGGGAATGAAGTTTCAACCTGTGATGAAGATGAGACTCTGTATAATGTGTTTCCACAGGTGAGATTGAACATGCTGCTGTTGTTGTTAAACATTTCGGCTATAAATCCAAGAACTATAGCAAAACTTAGGTCACAAGACAGTGGAAAGAGAAATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

234

Amino Acids

26.46

Weight (kDa)

8.94

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 72 2.1e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 457
AclWI GGATC 2 cut(s) 70, 117
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 230, 457
AgeI ACCGGT 1 cut(s) 442
AgsI TTSAA 3 cut(s) 286, 561, 613
AjnI CCWGG 4 cut(s) 165, 197, 223, 258
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 4 cut(s) 48, 131, 457, 464
AluI AGCT 4 cut(s) 48, 131, 457, 464
Alw21I GWGCWC 2 cut(s) 68, 216
Alw26I GTCTC 2 cut(s) 284, 572
AlwI GGATC 2 cut(s) 70, 117
AlwNI CAGNNNCTG 1 cut(s) 409
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 420, 619
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
AsiGI ACCGGT 1 cut(s) 442
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 5 cut(s) 10, 275, 432, 504, 616
BauI CACGAG 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 68, 216
BbvCI CCTCAGC 2 cut(s) 402, 427
BbvI GCAGC 2 cut(s) 407, 606
BccI CCATC 3 cut(s) 224, 402, 539
BciT130I CCWGG 4 cut(s) 167, 199, 225, 260
BciVI GTATCC 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 284, 572
BfmI CTRYAG 2 cut(s) 434, 660
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 2 cut(s) 421, 620
BlsI GCNGC 2 cut(s) 422, 621
Bme1390I CCNGG 4 cut(s) 167, 199, 225, 260
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 4 cut(s) 167, 199, 225, 260
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 246
Bpu10I CCTNAGC 2 cut(s) 402, 427
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 4 cut(s) 166, 198, 258, 259
BsaWI WCCGGW 2 cut(s) 313, 442
BsaXI ACNNNNNCTCC 4 cut(s) 219, 249, 407, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 457
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 86
Bse8I GATNNNNATC 1 cut(s) 534
BseBI CCWGG 4 cut(s) 167, 199, 225, 260
BseDI CCNNGG 4 cut(s) 166, 198, 258, 259
BseGI GGATG 1 cut(s) 418
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 2 cut(s) 230, 457
BseMII CTCAG 2 cut(s) 416, 441
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 415
BseXI GCAGC 2 cut(s) 407, 606
BshFI GGCC 1 cut(s) 257
BshTI ACCGGT 1 cut(s) 442
BsiHKAI GWGCWC 2 cut(s) 68, 216
BsiSI CCGG 2 cut(s) 314, 443
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 230, 457
BsmAI GTCTC 2 cut(s) 284, 572
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 68, 216
Bsp143I GATC 3 cut(s) 75, 122, 293
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 2 cut(s) 415, 440
BspHI TCATGA 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 438
BspPI GGATC 2 cut(s) 70, 117
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 4 cut(s) 166, 198, 258, 259
BssMI GATC 3 cut(s) 75, 122, 293
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 4 cut(s) 167, 199, 225, 260
Bst4CI ACNGT 1 cut(s) 686
Bst6I CTCTTC 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 174, 255
BstDEI CTNAG 3 cut(s) 402, 427, 671
BstF5I GGATG 1 cut(s) 418
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 3 cut(s) 78, 125, 296
BstMAI GTCTC 2 cut(s) 284, 572
BstMBI GATC 3 cut(s) 75, 122, 293
BstNI CCWGG 4 cut(s) 167, 199, 225, 260
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 4 cut(s) 165, 197, 223, 258
BstSFI CTRYAG 2 cut(s) 434, 660
BstV1I GCAGC 2 cut(s) 407, 606
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 418
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 3 cut(s) 79, 431, 691
Cac8I GCNNGC 2 cut(s) 174, 255
CaiI CAGNNNCTG 1 cut(s) 409
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 37
CspAI ACCGGT 1 cut(s) 442
CviAII CATG 2 cut(s) 209, 616
CviJI RGCY 9 cut(s) 29, 48, 131, 257, 335, 406, 457, 464, 644
CviKI_1 RGCY 9 cut(s) 29, 48, 131, 257, 335, 406, 457, 464, 644
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 3 cut(s) 402, 427, 671
DpnI GATC 3 cut(s) 77, 124, 295
DpnII GATC 3 cut(s) 75, 122, 293
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
EcoRII CCWGG 4 cut(s) 165, 197, 223, 258
FaeI CATG 2 cut(s) 212, 619
FaiI YATR 6 cut(s) 33, 210, 588, 617, 647, 662
FaqI GGGAC 1 cut(s) 433
FatI CATG 2 cut(s) 208, 615
Fnu4HI GCNGC 2 cut(s) 421, 620
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 421, 620
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 421, 620
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 257
HapII CCGG 2 cut(s) 314, 443
HhaI GCGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 212, 619
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 5 cut(s) 58, 308, 361, 530, 580
HpaII CCGG 2 cut(s) 314, 443
HphI GGTGA 5 cut(s) 10, 275, 432, 504, 616
Hpy188I TCNGA 4 cut(s) 63, 249, 298, 355
Hpy188III TCNNGA 5 cut(s) 139, 209, 283, 365, 410
HpyAV CCTTC 3 cut(s) 91, 298, 320
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4V TGCA 3 cut(s) 436, 472, 508
HpyF3I CTNAG 3 cut(s) 402, 427, 671
Hsp92II CATG 2 cut(s) 212, 619
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 3 cut(s) 75, 122, 293
LmnI GCTCC 3 cut(s) 63, 100, 428
Lsp1109I GCAGC 2 cut(s) 407, 606
MaeIII GTNAC 4 cut(s) 263, 438, 481, 675
MalI GATC 3 cut(s) 77, 124, 295
MboI GATC 3 cut(s) 75, 122, 293
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 2 cut(s) 68, 216
MluCI AATT 1 cut(s) 697
MlyI GAGTC 1 cut(s) 574
MnlI CCTC 5 cut(s) 141, 361, 411, 417, 436
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 2 cut(s) 111, 632
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 2 cut(s) 314, 443
MspR9I CCNGG 4 cut(s) 167, 199, 225, 260
MvaI CCWGG 4 cut(s) 167, 199, 225, 260
NdeII GATC 3 cut(s) 75, 122, 293
NlaIII CATG 2 cut(s) 212, 619
NmuCI GTSAC 4 cut(s) 263, 438, 481, 675
NspI RCATGY 1 cut(s) 619
OliI CACNNNNGTG 1 cut(s) 347
PagI TCATGA 1 cut(s) 208
PasI CCCWGGG 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 4 cut(s) 58, 308, 361, 530
PflMI CCANNNNNTGG 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 223
PinAI ACCGGT 1 cut(s) 442
PkrI GCNGC 2 cut(s) 422, 621
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PsiI TTATAA 1 cut(s) 33
Psp6I CCWGG 4 cut(s) 165, 197, 223, 258
PspGI CCWGG 4 cut(s) 165, 197, 223, 258
PspPI GGNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 438
PstNI CAGNNNCTG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 75
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 2 cut(s) 111, 632
SatI GCNGC 2 cut(s) 421, 620
Sau3AI GATC 3 cut(s) 75, 122, 293
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 4 cut(s) 167, 199, 225, 260
SduI GDGCHC 2 cut(s) 68, 216
SetI ASST 9 cut(s) 50, 133, 200, 403, 459, 466, 566, 606, 677
SfcI CTRYAG 2 cut(s) 434, 660
SgrAI CRCCGGYG 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 1 cut(s) 697
StyD4I CCNGG 4 cut(s) 165, 197, 223, 258
TaaI ACNGT 1 cut(s) 686
TaqI TCGA 2 cut(s) 56, 185
TasI AATT 1 cut(s) 697
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 4 cut(s) 58, 308, 361, 530
Tru1I TTAA 2 cut(s) 111, 632
Tru9I TTAA 2 cut(s) 111, 632
TscAI CASTG 3 cut(s) 86, 438, 691
TseFI GTSAC 4 cut(s) 263, 438, 481, 675
TseI GCWGC 2 cut(s) 420, 619
Tsp45I GTSAC 4 cut(s) 263, 438, 481, 675
TspDTI ATGAA 5 cut(s) 197, 339, 374, 567, 585
TspRI CASTG 3 cut(s) 86, 438, 691
Van91I CCANNNNNTGG 1 cut(s) 457
XceI RCATGY 1 cut(s) 619
XmnI GAANNNNTTC 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.