MD10G1186100.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000197
Physical Location & Seq
Forward (+)
28038450 .. 28038911
462 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1186100.v1.1.491

Sequence Viewer

Length: 462 bp
ATGGGAATGGGTGGTTCTTCTTTAGTCGGCCCGACTACAAGTACATCAAACAGCACTTGTTGCAACCAGGCCATGGATCAAGGCTTTTACAAGATCACGAGGAATGAGCGTGAGATCAGGGCTGAAGAATCCAAAGCTGTGATTGGGAAGAAGAGGATTTTGACCTTTTACGAAGGTCGTGTGCCGAAAGCAAAGAAGACCGATTGGGTAGTCCATGAGTATTATCTCATAAAAATTGAGATGGGTTCTAGACCCACCAAGCAGATGACGTCAAGGACAGGAATGTCTAGTGGGTCTTCATCGGCTGCCCCGGCGTCGGAAAAGGAACCTACGCCTCCCGCCTCTGCCACCTCATCGGCATCCCTCACATCGCCACCGGTGATCTCATCCGCGACGAGCTGGCTGCTTCCGACCCCTACCACTGTTGGCGAGCATGGAAACCATGATTGCGGATCCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

154

Amino Acids

16.23

Weight (kDa)

9.05

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 76 4.6e-10 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 283
AatII GACGTC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 73
AccII CGCG 1 cut(s) 392
AccIII TCCGGA 1 cut(s) 455
AciI CCGC 3 cut(s) 339, 390, 450
AclWI GGATC 3 cut(s) 84, 447, 460
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 2 cut(s) 269, 314
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 73, 316
AgeI ACCGGT 1 cut(s) 376
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 2 cut(s) 137, 399
AluI AGCT 2 cut(s) 137, 399
AlwI GGATC 3 cut(s) 84, 447, 460
Aor13HI TCCGGA 1 cut(s) 455
AoxI GGCC 2 cut(s) 28, 69
ApeKI GCWGC 2 cut(s) 305, 403
AsiGI ACCGGT 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 391
BamHI GGATCC 1 cut(s) 452
BauI CACGAG 1 cut(s) 97
BbsI GAAGAC 2 cut(s) 203, 288
BbvI GCAGC 2 cut(s) 292, 390
BccI CCATC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 1 cut(s) 311
BfaI CTAG 2 cut(s) 249, 288
BisI GCNGC 2 cut(s) 306, 404
BlsI GCNGC 2 cut(s) 307, 405
Bme1390I CCNGG 2 cut(s) 68, 311
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 327, 454
BmrFI CCNGG 2 cut(s) 68, 311
BmsI GCATC 1 cut(s) 368
BpiI GAAGAC 2 cut(s) 203, 288
BpuMI CCSGG 1 cut(s) 311
BsaHI GRCGYC 2 cut(s) 269, 314
BsaJI CCNNGG 2 cut(s) 72, 309
BsaWI WCCGGW 2 cut(s) 376, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 316
Bse118I RCCGGY 1 cut(s) 376
BseAI TCCGGA 1 cut(s) 455
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 72, 309
BseGI GGATG 2 cut(s) 359, 386
BseLI CCNNNNNNNGG 2 cut(s) 73, 316
BseXI GCAGC 2 cut(s) 292, 390
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 2 cut(s) 30, 71
BshTI ACCGGT 1 cut(s) 376
BsiSI CCGG 3 cut(s) 311, 377, 456
BslI CCNNNNNNNGG 2 cut(s) 73, 316
BsnI GGCC 2 cut(s) 30, 71
Bsp13I TCCGGA 1 cut(s) 455
Bsp143I GATC 5 cut(s) 76, 93, 114, 381, 452
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 3 cut(s) 339, 390, 450
BspANI GGCC 2 cut(s) 30, 71
BspEI TCCGGA 1 cut(s) 455
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 2 cut(s) 327, 454
BspPI GGATC 3 cut(s) 84, 447, 460
BsrFI RCCGGY 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 72, 309
BssMI GATC 5 cut(s) 76, 93, 114, 381, 452
BssNI GRCGYC 2 cut(s) 269, 314
BssSI CACGAG 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 2 cut(s) 269, 314
BstAPI GCANNNNNTGC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 401, 431
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 359, 386
BstFNI CGCG 1 cut(s) 392
BstKTI GATC 5 cut(s) 79, 96, 117, 384, 455
BstMBI GATC 5 cut(s) 76, 93, 114, 381, 452
BstMWI GCNNNNNNNGC 2 cut(s) 60, 311
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 66, 309
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 2 cut(s) 292, 390
BstV2I GAAGAC 2 cut(s) 203, 288
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 2 cut(s) 30, 71
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 2 cut(s) 359, 386
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 401, 431
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 29
CseI GACGC 1 cut(s) 303
Csp6I GTAC 1 cut(s) 42
CspAI ACCGGT 1 cut(s) 376
CviAII CATG 4 cut(s) 73, 215, 434, 443
CviJI RGCY 8 cut(s) 30, 71, 84, 122, 137, 305, 399, 403
CviKI_1 RGCY 8 cut(s) 30, 71, 84, 122, 137, 305, 399, 403
CviQI GTAC 1 cut(s) 42
DpnI GATC 5 cut(s) 78, 95, 116, 383, 454
DpnII GATC 5 cut(s) 76, 93, 114, 381, 452
DrdI GACNNNNNNGTC 1 cut(s) 283
DseDI GACNNNNNNGTC 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 4 cut(s) 76, 218, 437, 446
FaiI YATR 5 cut(s) 74, 216, 230, 435, 444
FatI CATG 4 cut(s) 72, 214, 433, 442
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 306, 404
FokI GGATG 2 cut(s) 346, 373
Fsp4HI GCNGC 2 cut(s) 306, 404
FspBI CTAG 2 cut(s) 249, 288
GluI GCNGC 2 cut(s) 306, 404
HaeIII GGCC 2 cut(s) 30, 71
HapII CCGG 3 cut(s) 311, 377, 456
HgaI GACGC 1 cut(s) 303
Hin1I GRCGYC 2 cut(s) 269, 314
Hin1II CATG 4 cut(s) 76, 218, 437, 446
HinfI GANTC 1 cut(s) 128
HpaII CCGG 3 cut(s) 311, 377, 456
HphI GGTGA 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 319, 411
Hpy188III TCNNGA 3 cut(s) 97, 249, 456
Hpy99I CGWCG 2 cut(s) 319, 397
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 311
HpySE526I ACGT 1 cut(s) 269
Hsp92I GRCGYC 2 cut(s) 269, 314
Hsp92II CATG 4 cut(s) 76, 218, 437, 446
Kpn2I TCCGGA 1 cut(s) 455
Kzo9I GATC 5 cut(s) 76, 93, 114, 381, 452
LpnPI CCDG 7 cut(s) 53, 80, 103, 264, 324, 385, 390
Lsp1109I GCAGC 2 cut(s) 292, 390
LweI GCATC 1 cut(s) 368
MaeI CTAG 2 cut(s) 249, 288
MaeII ACGT 1 cut(s) 269
MalI GATC 5 cut(s) 78, 95, 116, 383, 454
MboI GATC 5 cut(s) 76, 93, 114, 381, 452
MboII GAAGA 6 cut(s) 9, 137, 160, 163, 208, 288
MflI RGATCY 1 cut(s) 452
MluCI AATT 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 297, 434
MnlI CCTC 6 cut(s) 93, 147, 345, 352, 361, 374
MroI TCCGGA 1 cut(s) 455
MspI CCGG 3 cut(s) 311, 377, 456
MspR9I CCNGG 2 cut(s) 68, 311
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 2 cut(s) 60, 311
NciI CCSGG 1 cut(s) 311
NcoI CCATGG 1 cut(s) 72
NdeII GATC 5 cut(s) 76, 93, 114, 381, 452
NlaIII CATG 4 cut(s) 76, 218, 437, 446
NlaIV GGNNCC 2 cut(s) 327, 454
PfeI GAWTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 73
PinAI ACCGGT 1 cut(s) 376
PkrI GCNGC 2 cut(s) 307, 405
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 327, 454
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SatI GCNGC 2 cut(s) 306, 404
Sau3AI GATC 5 cut(s) 76, 93, 114, 381, 452
Sau96I GGNCC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 68, 311
SetI ASST 7 cut(s) 139, 167, 178, 272, 331, 353, 401
SfaNI GCATC 1 cut(s) 368
SgrAI CRCCGGYG 1 cut(s) 376
Sse9I AATT 1 cut(s) 234
SsiI CCGC 3 cut(s) 339, 390, 450
SspMI CTAG 2 cut(s) 249, 288
StyD4I CCNGG 2 cut(s) 66, 309
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 1 cut(s) 272
TaqII GACCGA 1 cut(s) 215
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 1 cut(s) 427
TseI GCWGC 2 cut(s) 305, 403
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 1 cut(s) 427
Van91I CCANNNNNTGG 1 cut(s) 73
XbaI TCTAGA 1 cut(s) 248
XspI CTAG 2 cut(s) 249, 288
ZraI GACGTC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.