MD01G1092500.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000197
Physical Location & Seq
Reverse (-)
20711676 .. 20712744
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1092500.v1.1.491

Sequence Viewer

Length: 564 bp
ATGAGCAGTGGCAGTAGCAGCAGCAGCATGACAACTGAAGAAGGCGATGCAGAGAATGTGAATGTGATCCTACTACCTGGGTTCAGATTCTACCCCACTGATGAGTTGCTGGTCAGCTACTACTTGAGGAACAAGATACAGGGCACCGACTCTCATTTCTGCCACCTCATCCCTGAAATGGATGTCTGCAAGTACGAGCCCTGCGATCTTCCTGCATTCTTCCCAGAAGTCCATGAGAAGGAGTGGTTCTTCTTTACCCGGCTCGATTACAAGTACAACAACGGCACTCGCTGCAACCGGGCCACGGATCAAGGCTTTTACAAGATCACAGGAAAGGAGCGGGAGATCAGAGCTGAAGAATCCAAGGCTGTGGTTGGGAAGAAGAGGACCCTGACATTCTACGAAGGTCGTGTACCGAAATCAAAGAAGACCGATTGGATAGTCCATGAGTATTATCTCACAGAAACTGAGGTGGGTTCTAAACCCACCAAGCAGAAGGACTTTGTCCTCTGCCGCCTGAAGAACAAGTCAGCTAGTTACCTTTGCTGTCCACGATTCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

188

Amino Acids

21.79

Weight (kDa)

8.09

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 26 - 153 6.3e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccBSI CCGCTC 1 cut(s) 340
AciI CCGC 2 cut(s) 340, 514
AclWI GGATC 2 cut(s) 61, 315
AcuI CTGAAG 3 cut(s) 57, 375, 539
AfaI GTAC 3 cut(s) 194, 275, 414
AfiI CCNNNNNNNGG 3 cut(s) 178, 238, 304
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 3 cut(s) 117, 353, 533
AluI AGCT 3 cut(s) 117, 353, 533
AlwI GGATC 2 cut(s) 61, 315
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 4 cut(s) 18, 21, 24, 291
AspS9I GGNCC 2 cut(s) 300, 387
AsuC2I CCSGG 2 cut(s) 259, 299
AvaII GGWCC 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 4 cut(s) 30, 33, 36, 278
BceAI ACGGC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 2 cut(s) 259, 299
BfaI CTAG 1 cut(s) 534
BisI GCNGC 5 cut(s) 19, 22, 25, 292, 514
BlsI GCNGC 5 cut(s) 20, 23, 26, 293, 515
Bme1390I CCNGG 3 cut(s) 78, 259, 299
Bme18I GGWCC 1 cut(s) 387
BmgT120I GGNCC 2 cut(s) 300, 387
BmiI GGNNCC 2 cut(s) 145, 389
BmrFI CCNGG 3 cut(s) 78, 259, 299
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 145
BpuMI CCSGG 2 cut(s) 259, 299
BsaJI CCNNGG 3 cut(s) 77, 303, 363
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 238, 304
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 3 cut(s) 77, 303, 363
BseGI GGATG 2 cut(s) 168, 187
BseLI CCNNNNNNNGG 3 cut(s) 178, 238, 304
BseMII CTCAG 1 cut(s) 459
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 4 cut(s) 30, 33, 36, 278
BshFI GGCC 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 143
BsiSI CCGG 2 cut(s) 259, 298
BslI CCNNNNNNNGG 3 cut(s) 178, 238, 304
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 1 cut(s) 302
Bsp1286I GDGCHC 2 cut(s) 146, 201
Bsp143I GATC 5 cut(s) 66, 205, 307, 324, 345
BspACI CCGC 2 cut(s) 340, 514
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 145, 389
BspPI GGATC 2 cut(s) 61, 315
BspT107I GGYRCC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 77, 303, 363
BssMI GATC 5 cut(s) 66, 205, 307, 324, 345
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 377
BstAPI GCANNNNNTGC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 168, 187
BstKTI GATC 5 cut(s) 69, 208, 310, 327, 348
BstMBI GATC 5 cut(s) 66, 205, 307, 324, 345
BstMWI GCNNNNNNNGC 3 cut(s) 18, 24, 291
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 3 cut(s) 76, 257, 297
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 4 cut(s) 30, 33, 36, 278
BstV2I GAAGAC 1 cut(s) 434
BstXI CCANNNNNNTGG 1 cut(s) 370
BsuRI GGCC 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 168, 187
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 13, 96
CaiI CAGNNNCTG 1 cut(s) 467
Cfr13I GGNCC 2 cut(s) 300, 387
Csp6I GTAC 3 cut(s) 193, 274, 413
CviAII CATG 3 cut(s) 28, 233, 446
CviJI RGCY 8 cut(s) 117, 199, 262, 302, 315, 353, 368, 533
CviKI_1 RGCY 8 cut(s) 117, 199, 262, 302, 315, 353, 368, 533
CviQI GTAC 3 cut(s) 193, 274, 413
DdeI CTNAG 1 cut(s) 468
DpnI GATC 5 cut(s) 68, 207, 309, 326, 347
DpnII GATC 5 cut(s) 66, 205, 307, 324, 345
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 387
Eco57I CTGAAG 3 cut(s) 57, 375, 539
EcoO109I RGGNCCY 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 3 cut(s) 31, 236, 449
FaiI YATR 3 cut(s) 29, 234, 447
FatI CATG 3 cut(s) 27, 232, 445
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 5 cut(s) 19, 22, 25, 292, 514
FokI GGATG 2 cut(s) 155, 194
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 5 cut(s) 19, 22, 25, 292, 514
FspBI CTAG 1 cut(s) 534
GluI GCNGC 5 cut(s) 19, 22, 25, 292, 514
HaeIII GGCC 1 cut(s) 302
HapII CCGG 2 cut(s) 259, 298
Hin1II CATG 3 cut(s) 31, 236, 449
HinfI GANTC 4 cut(s) 87, 149, 359, 555
HpaII CCGG 2 cut(s) 259, 298
Hpy166II GTNNAC 2 cut(s) 413, 551
Hpy188I TCNGA 2 cut(s) 86, 350
Hpy8I GTNNAC 2 cut(s) 413, 551
HpyAV CCTTC 4 cut(s) 35, 232, 398, 490
HpyCH4V TGCA 4 cut(s) 50, 189, 215, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 24, 291
HpyF3I CTNAG 1 cut(s) 468
Hsp92II CATG 3 cut(s) 31, 236, 449
Kzo9I GATC 5 cut(s) 66, 205, 307, 324, 345
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 4 cut(s) 30, 33, 36, 278
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 534
MaeIII GTNAC 1 cut(s) 536
MalI GATC 5 cut(s) 68, 207, 309, 326, 347
MbiI CCGCTC 1 cut(s) 340
MboI GATC 5 cut(s) 66, 205, 307, 324, 345
MboII GAAGA 9 cut(s) 50, 200, 211, 241, 368, 391, 394, 439, 532
MhlI GDGCHC 2 cut(s) 146, 201
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 5 cut(s) 120, 176, 378, 463, 518
MspI CCGG 2 cut(s) 259, 298
MspR9I CCNGG 3 cut(s) 78, 259, 299
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 3 cut(s) 18, 24, 291
NciI CCSGG 2 cut(s) 259, 299
NdeII GATC 5 cut(s) 66, 205, 307, 324, 345
NlaIII CATG 3 cut(s) 31, 236, 449
NlaIV GGNNCC 2 cut(s) 145, 389
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 1 cut(s) 215
PfeI GAWTC 3 cut(s) 87, 359, 555
PflFI GACNNNGTC 1 cut(s) 503
PkrI GCNGC 5 cut(s) 20, 23, 26, 293, 515
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 145, 389
PspPI GGNCC 2 cut(s) 300, 387
PspPPI RGGWCCY 1 cut(s) 387
PstNI CAGNNNCTG 1 cut(s) 467
PsyI GACNNNGTC 1 cut(s) 503
RsaI GTAC 3 cut(s) 194, 275, 414
RsaNI GTAC 3 cut(s) 193, 274, 413
SatI GCNGC 5 cut(s) 19, 22, 25, 292, 514
Sau3AI GATC 5 cut(s) 66, 205, 307, 324, 345
Sau96I GGNCC 2 cut(s) 300, 387
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 3 cut(s) 78, 259, 299
SduI GDGCHC 2 cut(s) 146, 201
SetI ASST 8 cut(s) 79, 119, 168, 355, 409, 474, 535, 543
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SsiI CCGC 2 cut(s) 340, 514
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 76, 257, 297
StyI CCWWGG 1 cut(s) 363
TaqI TCGA 1 cut(s) 264
TaqII GACCGA 1 cut(s) 446
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 3 cut(s) 87, 359, 555
TscAI CASTG 2 cut(s) 13, 103
TseI GCWGC 4 cut(s) 18, 21, 24, 291
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 13, 103
Tth111I GACNNNGTC 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 387
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.