Rh1AG133700
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000197
Physical Location & Seq
Reverse (-)
25643997 .. 25645682
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG133700.1

Sequence Viewer

Length: 933 bp
ATGAGCAGCGAGAGAACGACGCCGCTTTCCGTGCCAGTAGGCTACAGGTTCCATCCCACCGAAGAGGAGCTGGTGAACCATTACTTGAAGAAGAAGATTCATGGCGGAAATGATTCCGAAATCAACCAAATCATCCCTGAAATCGACCTCTGCAAATACGAGCCCGCTGAGCTTCCTGCATTGTTGGGGACTGGGACAGAGGCTCATGACATGGAGTGGTTCTTCTTCACCAGAAGGGCTTATAAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACCAAGAAGGGATACTGGAAGATCACAGGGAAGGAGCGTGGAATTAAAGCTCGACGATCCAAAGCTGTGATTGGGATGAAGAAGACATTGACTTTTTACCAGGGTCGTGTGCCGAAATCGAAGAAGACCAGCTGGGTCATTCATGAGTACTATCTTCCTGGAAATGGAGTTATTAAGCAGGCCCAGGGCGACTTTGTTATCTGTCGCTTGAAGATTAAATCAGATAAGAAGGATTCTTCAGTCAGTAATGAAGGAGAACCTGGTAGCGCGAGTGTGTCTGAAATGAATCAAGAGGGAAATGAGGAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCAGTCACCGGTGTCCCAAAAGCTGGAAGCTGTTCTGCAAACCAATGTCACTAATGATGATTGTAATGAGTTACAATCACCATTTGGAGATAGTGATTCTTGTCTATTAGACGGGAATGAAGTTTCAACCTGTGATGAAAATGAGGCTGTGTATGATGTGTTTCCACAGGTGAGAATGAACATGCTTCTGTTGTTGTTAAACATTTCGGCTACAAATCCAAGTACTAACTTAAGTCACAAGACCGAGTGGAAACAGAAATTGCTGATTCTTATGTTACAAGAATATCTTTCCAACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

310

Amino Acids

35.07

Weight (kDa)

6.47

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 143 1.7e-41 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 655
AccII CGCG 1 cut(s) 545
AciI CCGC 3 cut(s) 23, 105, 165
AclWI GGATC 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 3 cut(s) 248, 425, 856
AfiI CCNNNNNNNGG 2 cut(s) 440, 655
AflII CTTAAG 1 cut(s) 862
AgeI ACCGGT 1 cut(s) 640
AgsI TTSAA 3 cut(s) 88, 487, 759
AjnI CCWGG 4 cut(s) 375, 433, 459, 535
AluBI AGCT 8 cut(s) 70, 172, 258, 326, 341, 408, 655, 662
AluI AGCT 8 cut(s) 70, 172, 258, 326, 341, 408, 655, 662
Alw21I GWGCWC 1 cut(s) 278
AlwI GGATC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 607
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 2 cut(s) 6, 618
AsiGI ACCGGT 1 cut(s) 640
Asp700I GAANNNNTTC 2 cut(s) 112, 663
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 5 cut(s) 85, 220, 630, 702, 814
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 365, 407
Bbv12I GWGCWC 1 cut(s) 278
BbvCI CCTCAGC 2 cut(s) 600, 625
BbvI GCAGC 2 cut(s) 18, 605
BccI CCATC 2 cut(s) 60, 600
BciT130I CCWGG 4 cut(s) 377, 435, 461, 537
BciVI GTATCC 1 cut(s) 281
BfmI CTRYAG 2 cut(s) 43, 632
BfrI CTTAAG 1 cut(s) 862
BfuI GTATCC 1 cut(s) 281
BisI GCNGC 3 cut(s) 7, 23, 619
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 3 cut(s) 8, 24, 620
BmcAI AGTACT 2 cut(s) 425, 856
Bme1390I CCNGG 4 cut(s) 377, 435, 461, 537
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 4 cut(s) 377, 435, 461, 537
BmrI ACTGGG 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 2 cut(s) 365, 407
Bpu10I CCTNAGC 2 cut(s) 600, 625
Bpu1102I GCTNAGC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 376, 459, 460
BsaWI WCCGGW 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 655
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 3 cut(s) 35, 196, 296
BseBI CCWGG 4 cut(s) 377, 435, 461, 537
BseDI CCNNGG 3 cut(s) 376, 459, 460
BseGI GGATG 4 cut(s) 52, 132, 357, 616
BseLI CCNNNNNNNGG 2 cut(s) 440, 655
BseMII CTCAG 3 cut(s) 159, 614, 639
BseNI ACTGG 3 cut(s) 35, 196, 296
BseRI GAGGAG 3 cut(s) 80, 593, 613
BseXI GCAGC 2 cut(s) 18, 605
BseYI CCCAGC 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 545
BshFI GGCC 1 cut(s) 458
BshTI ACCGGT 1 cut(s) 640
BsiHKAI GWGCWC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 641
BslFI GGGAC 3 cut(s) 202, 208, 631
BslI CCNNNNNNNGG 2 cut(s) 440, 655
BsmFI GGGAC 3 cut(s) 202, 208, 631
BsnI GGCC 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 165, 278
Bsp143I GATC 2 cut(s) 297, 332
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 3 cut(s) 23, 105, 165
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 3 cut(s) 160, 613, 638
BspFNI CGCG 1 cut(s) 545
BspHI TCATGA 2 cut(s) 205, 418
BspLI GGNNCC 1 cut(s) 50
BspMAI CTGCAG 1 cut(s) 636
BspPI GGATC 1 cut(s) 327
BspTI CTTAAG 1 cut(s) 862
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 3 cut(s) 35, 196, 296
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 3 cut(s) 376, 459, 460
BssMI GATC 2 cut(s) 297, 332
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 4 cut(s) 377, 435, 461, 537
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 862
BstC8I GCNNGC 2 cut(s) 165, 456
BstDEI CTNAG 3 cut(s) 168, 600, 625
BstF5I GGATG 4 cut(s) 52, 132, 357, 616
BstFNI CGCG 1 cut(s) 545
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 2 cut(s) 300, 335
BstMBI GATC 2 cut(s) 297, 332
BstMWI GCNNNNNNNGC 2 cut(s) 31, 169
BstNI CCWGG 4 cut(s) 377, 435, 461, 537
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 4 cut(s) 375, 433, 459, 535
BstSFI CTRYAG 2 cut(s) 43, 632
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 18, 605
BstV2I GAAGAC 2 cut(s) 365, 407
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 458
BtsCI GGATG 4 cut(s) 52, 132, 357, 616
BtsI GCAGTG 1 cut(s) 629
BtsIMutI CAGTG 2 cut(s) 629, 928
Cac8I GCNNGC 2 cut(s) 165, 456
CaiI CAGNNNCTG 1 cut(s) 607
CciI TCATGA 2 cut(s) 205, 418
CfoI GCGC 1 cut(s) 545
Cfr10I RCCGGY 1 cut(s) 640
Cfr13I GGNCC 1 cut(s) 457
CseI GACGC 1 cut(s) 28
CsiI ACCWGGT 1 cut(s) 535
Csp6I GTAC 3 cut(s) 247, 424, 855
CspAI ACCGGT 1 cut(s) 640
CviAII CATG 5 cut(s) 101, 206, 211, 419, 814
CviQI GTAC 3 cut(s) 247, 424, 855
DdeI CTNAG 3 cut(s) 168, 600, 625
DpnI GATC 2 cut(s) 299, 334
DpnII GATC 2 cut(s) 297, 332
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 165
Eco57I CTGAAG 1 cut(s) 498
EcoRII CCWGG 4 cut(s) 375, 433, 459, 535
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 5 cut(s) 104, 209, 214, 422, 817
FaiI YATR 8 cut(s) 102, 207, 212, 243, 420, 786, 815, 905
FalI AAGNNNNNCTT 1 cut(s) 903
FaqI GGGAC 3 cut(s) 202, 208, 631
FatI CATG 5 cut(s) 100, 205, 210, 418, 813
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 3 cut(s) 7, 23, 619
FokI GGATG 4 cut(s) 39, 119, 364, 623
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 7, 23, 619
GlaI GCGC 1 cut(s) 544
GluI GCNGC 3 cut(s) 7, 23, 619
GsaI CCCAGC 1 cut(s) 412
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 641
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 545
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 5 cut(s) 104, 209, 214, 422, 817
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 7 cut(s) 97, 113, 268, 509, 562, 728, 898
HpaII CCGG 1 cut(s) 641
HphI GGTGA 5 cut(s) 85, 220, 630, 702, 814
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 4 cut(s) 118, 273, 499, 556
Hpy188III TCNNGA 4 cut(s) 206, 419, 566, 608
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 22, 333
HpyAV CCTTC 5 cut(s) 228, 277, 301, 499, 521
HpyCH4V TGCA 4 cut(s) 153, 179, 634, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 169
HpyF3I CTNAG 3 cut(s) 168, 600, 625
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 5 cut(s) 104, 209, 214, 422, 817
HspAI GCGC 1 cut(s) 543
Kzo9I GATC 2 cut(s) 297, 332
LmnI GCTCC 4 cut(s) 67, 273, 310, 626
Lsp1109I GCAGC 2 cut(s) 18, 605
MabI ACCWGGT 1 cut(s) 535
MaeIII GTNAC 5 cut(s) 636, 679, 702, 866, 906
MalI GATC 2 cut(s) 299, 334
MboI GATC 2 cut(s) 297, 332
MhlI GDGCHC 2 cut(s) 165, 278
MluCI AATT 2 cut(s) 318, 890
MnlI CCTC 9 cut(s) 58, 158, 193, 562, 571, 609, 615, 634, 769
MroXI GAANNNNTTC 2 cut(s) 112, 663
MseI TTAA 5 cut(s) 321, 450, 492, 830, 863
MspA1I CMGCKG 2 cut(s) 167, 408
MspCI CTTAAG 1 cut(s) 862
MspI CCGG 1 cut(s) 641
MspR9I CCNGG 4 cut(s) 377, 435, 461, 537
MvaI CCWGG 4 cut(s) 377, 435, 461, 537
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 2 cut(s) 31, 169
NdeII GATC 2 cut(s) 297, 332
NlaIII CATG 5 cut(s) 104, 209, 214, 422, 817
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 3 cut(s) 636, 679, 866
NspI RCATGY 1 cut(s) 817
PagI TCATGA 2 cut(s) 205, 418
PasI CCCWGGG 1 cut(s) 460
PdmI GAANNNNTTC 2 cut(s) 112, 663
PfeI GAWTC 7 cut(s) 97, 113, 268, 509, 562, 728, 898
PflMI CCANNNNNTGG 1 cut(s) 655
PfoI TCCNGGA 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 640
PkrI GCNGC 3 cut(s) 8, 24, 620
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 4 cut(s) 375, 433, 459, 535
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 4 cut(s) 375, 433, 459, 535
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 457
PstI CTGCAG 1 cut(s) 636
PstNI CAGNNNCTG 1 cut(s) 607
PvuII CAGCTG 1 cut(s) 408
RsaI GTAC 3 cut(s) 248, 425, 856
RsaNI GTAC 3 cut(s) 247, 424, 855
SaqAI TTAA 5 cut(s) 321, 450, 492, 830, 863
SatI GCNGC 3 cut(s) 7, 23, 619
Sau3AI GATC 2 cut(s) 297, 332
Sau96I GGNCC 1 cut(s) 457
ScaI AGTACT 2 cut(s) 425, 856
ScrFI CCNGG 4 cut(s) 377, 435, 461, 537
SduI GDGCHC 2 cut(s) 165, 278
SexAI ACCWGGT 1 cut(s) 535
SfcI CTRYAG 2 cut(s) 43, 632
SgrAI CRCCGGYG 1 cut(s) 640
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
Sse9I AATT 2 cut(s) 318, 890
SsiI CCGC 3 cut(s) 23, 105, 165
StyD4I CCNGG 4 cut(s) 375, 433, 459, 535
TaqI TCGA 4 cut(s) 144, 266, 328, 395
TaqII GACCGA 1 cut(s) 890
TasI AATT 2 cut(s) 318, 890
TatI WGTACW 3 cut(s) 246, 423, 854
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 7 cut(s) 97, 113, 268, 509, 562, 728, 898
Tru1I TTAA 5 cut(s) 321, 450, 492, 830, 863
Tru9I TTAA 5 cut(s) 321, 450, 492, 830, 863
TscAI CASTG 1 cut(s) 636
TseFI GTSAC 3 cut(s) 636, 679, 866
TseI GCWGC 2 cut(s) 6, 618
Tsp45I GTSAC 3 cut(s) 636, 679, 866
TspDTI ATGAA 8 cut(s) 89, 368, 407, 540, 575, 765, 783, 824
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 1 cut(s) 636
Van91I CCANNNNNTGG 1 cut(s) 655
Vha464I CTTAAG 1 cut(s) 862
XceI RCATGY 1 cut(s) 817
XmnI GAANNNNTTC 2 cut(s) 112, 663
ZrmI AGTACT 2 cut(s) 425, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.