RLG00000029532
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000197
Physical Location & Seq
Forward (+)
39966278 .. 39967902
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029532

Sequence Viewer

Length: 786 bp
ATGAGCAGCGAGAGAACGACGCCGCTTTCAGTGCCGGTAGGCTACAGGTTCCATCCCACCGAAGAGGAGCTGGTGAACCATTACTTGAAGAAGAAGATTCATGGCGGAAATGATTCCGAAATCAACCAAATCATCCCTGAAATCGACCTCTGCAAATACGAGCCGGCTGAGCTTCCTGCATTGTTGGGGACTGAGGCAGAGGCTCATGACATGGAGTGGTTCTTCTTCACCAGAAGGGCTTATAAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACCAAGAAGGGATACTGGAAGATCACAGGGAAGGACCGTGGAATTAAAGCTCGACGATCCAAAGCTGTGATTGGGATGAAGAAGACATTGACTTTTTACCAGGGTCGTGTGCCGAAATCGAAGAAGACCAGCTGGGTCATTCATGAGTACTATCTTCCTGGAAATGGAGTTATTAAGCAGGCCCAGGGAAATGAGGAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCGGTCACCGGTGTCTCAAGAGCTGGAAGCTGTTCTGCAAGCCAATGTCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATGGTGATTCTTGTCTGTTAGACGGGAATGAAGTTTCAACCTGTGATGAAAATGAGACTGTGTATGATGTGTTTCCACAGGTGAGAATGAACATGCTTCTGTTGTTGTTGAACATTTCGGCTACAAATCCAAGCACCATAGCAAAACTTAAGTACGTCACTAAGACTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

262

Amino Acids

29.57

Weight (kDa)

6.61

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 143 4.4e-42 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AciI CCGC 3 cut(s) 23, 105, 526
AclWI GGATC 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 3 cut(s) 248, 425, 767
AfiI CCNNNNNNNGG 1 cut(s) 440
AflII CTTAAG 1 cut(s) 761
AgeI ACCGGT 1 cut(s) 532
AgsI TTSAA 3 cut(s) 88, 651, 724
AjnI CCWGG 3 cut(s) 375, 433, 459
AluBI AGCT 8 cut(s) 70, 172, 258, 326, 341, 408, 547, 554
AluI AGCT 8 cut(s) 70, 172, 258, 326, 341, 408, 547, 554
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 2 cut(s) 543, 662
AlwI GGATC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 499
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 2 cut(s) 6, 510
AsiGI ACCGGT 1 cut(s) 532
Asp700I GAANNNNTTC 2 cut(s) 112, 555
AspS9I GGNCC 2 cut(s) 310, 457
AsuHPI GGTGA 6 cut(s) 85, 220, 522, 594, 629, 706
AvaII GGWCC 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 365, 407
Bbv12I GWGCWC 1 cut(s) 278
BbvCI CCTCAGC 2 cut(s) 492, 517
BbvI GCAGC 2 cut(s) 18, 497
BccI CCATC 3 cut(s) 60, 492, 608
BciT130I CCWGG 3 cut(s) 377, 435, 461
BciVI GTATCC 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 543, 662
BfmI CTRYAG 1 cut(s) 43
BfrI CTTAAG 1 cut(s) 761
BfuI GTATCC 1 cut(s) 281
BisI GCNGC 3 cut(s) 7, 23, 511
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 3 cut(s) 8, 24, 512
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 3 cut(s) 377, 435, 461
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 310, 457
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 3 cut(s) 377, 435, 461
BpiI GAAGAC 2 cut(s) 365, 407
Bpu10I CCTNAGC 2 cut(s) 492, 517
Bpu1102I GCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 525
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 4 cut(s) 313, 376, 459, 460
BsaWI WCCGGW 1 cut(s) 532
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse118I RCCGGY 3 cut(s) 34, 163, 532
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 3 cut(s) 377, 435, 461
BseDI CCNNGG 4 cut(s) 313, 376, 459, 460
BseGI GGATG 4 cut(s) 52, 132, 357, 508
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 5 cut(s) 159, 183, 506, 531, 771
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 3 cut(s) 80, 485, 505
BseXI GCAGC 2 cut(s) 18, 497
BseYI CCCAGC 1 cut(s) 408
BshFI GGCC 1 cut(s) 458
BshTI ACCGGT 1 cut(s) 532
BsiHKAI GWGCWC 1 cut(s) 278
BsiSI CCGG 3 cut(s) 35, 164, 533
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 2 cut(s) 543, 662
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 2 cut(s) 297, 332
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 3 cut(s) 23, 105, 526
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 5 cut(s) 160, 184, 505, 530, 772
BspHI TCATGA 2 cut(s) 205, 418
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 327
BspTI CTTAAG 1 cut(s) 761
BsrFI RCCGGY 3 cut(s) 34, 163, 532
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 3 cut(s) 34, 163, 532
BssECI CCNNGG 4 cut(s) 313, 376, 459, 460
BssMI GATC 2 cut(s) 297, 332
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 3 cut(s) 377, 435, 461
Bst4CI ACNGT 2 cut(s) 314, 673
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 761
BstC8I GCNNGC 3 cut(s) 165, 456, 564
BstDEI CTNAG 6 cut(s) 168, 192, 492, 517, 774, 780
BstDSI CCRYGG 1 cut(s) 313
BstEII GGTNACC 1 cut(s) 528
BstF5I GGATG 4 cut(s) 52, 132, 357, 508
BstKTI GATC 2 cut(s) 300, 335
BstMAI GTCTC 2 cut(s) 543, 662
BstMBI GATC 2 cut(s) 297, 332
BstMWI GCNNNNNNNGC 2 cut(s) 31, 169
BstNI CCWGG 3 cut(s) 377, 435, 461
BstNSI RCATGY 1 cut(s) 709
BstPI GGTNACC 1 cut(s) 528
BstSCI CCNGG 3 cut(s) 375, 433, 459
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 18, 497
BstV2I GAAGAC 2 cut(s) 365, 407
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 4 cut(s) 52, 132, 357, 508
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 2 cut(s) 36, 521
Cac8I GCNNGC 3 cut(s) 165, 456, 564
CaiI CAGNNNCTG 1 cut(s) 499
CciI TCATGA 2 cut(s) 205, 418
Cfr10I RCCGGY 3 cut(s) 34, 163, 532
Cfr13I GGNCC 2 cut(s) 310, 457
CseI GACGC 1 cut(s) 28
Csp6I GTAC 3 cut(s) 247, 424, 766
CspAI ACCGGT 1 cut(s) 532
CviAII CATG 5 cut(s) 101, 206, 211, 419, 706
CviQI GTAC 3 cut(s) 247, 424, 766
DdeI CTNAG 6 cut(s) 168, 192, 492, 517, 774, 780
DpnI GATC 2 cut(s) 299, 334
DpnII GATC 2 cut(s) 297, 332
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 310
Eco91I GGTNACC 1 cut(s) 528
EcoO65I GGTNACC 1 cut(s) 528
EcoRII CCWGG 3 cut(s) 375, 433, 459
FaeI CATG 5 cut(s) 104, 209, 214, 422, 709
FaiI YATR 8 cut(s) 102, 207, 212, 243, 420, 678, 707, 752
FaqI GGGAC 1 cut(s) 202
FatI CATG 5 cut(s) 100, 205, 210, 418, 705
Fnu4HI GCNGC 3 cut(s) 7, 23, 511
FokI GGATG 4 cut(s) 39, 119, 364, 515
Fsp4HI GCNGC 3 cut(s) 7, 23, 511
GluI GCNGC 3 cut(s) 7, 23, 511
GsaI CCCAGC 1 cut(s) 412
HaeIII GGCC 1 cut(s) 458
HapII CCGG 3 cut(s) 35, 164, 533
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 5 cut(s) 104, 209, 214, 422, 709
HinfI GANTC 4 cut(s) 97, 113, 268, 620
HpaII CCGG 3 cut(s) 35, 164, 533
HphI GGTGA 6 cut(s) 85, 220, 522, 594, 629, 706
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 118, 273
Hpy188III TCNNGA 4 cut(s) 206, 419, 500, 542
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 22, 333
HpyAV CCTTC 3 cut(s) 228, 277, 301
HpyCH4III ACNGT 2 cut(s) 314, 673
HpyCH4IV ACGT 1 cut(s) 768
HpyCH4V TGCA 4 cut(s) 153, 179, 562, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 169
HpyF3I CTNAG 6 cut(s) 168, 192, 492, 517, 774, 780
HpySE526I ACGT 1 cut(s) 768
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 5 cut(s) 104, 209, 214, 422, 709
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Kzo9I GATC 2 cut(s) 297, 332
LmnI GCTCC 3 cut(s) 67, 273, 518
Lsp1109I GCAGC 2 cut(s) 18, 497
MaeII ACGT 1 cut(s) 768
MaeIII GTNAC 3 cut(s) 528, 571, 769
MalI GATC 2 cut(s) 299, 334
MboI GATC 2 cut(s) 297, 332
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 1 cut(s) 318
MnlI CCTC 8 cut(s) 58, 158, 187, 193, 463, 501, 507, 526
MroNI GCCGGC 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 112, 555
MseI TTAA 3 cut(s) 321, 450, 762
MspA1I CMGCKG 1 cut(s) 408
MspCI CTTAAG 1 cut(s) 761
MspI CCGG 3 cut(s) 35, 164, 533
MspR9I CCNGG 3 cut(s) 377, 435, 461
MvaI CCWGG 3 cut(s) 377, 435, 461
MwoI GCNNNNNNNGC 2 cut(s) 31, 169
NaeI GCCGGC 1 cut(s) 165
NdeII GATC 2 cut(s) 297, 332
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 5 cut(s) 104, 209, 214, 422, 709
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 3 cut(s) 528, 571, 769
NspI RCATGY 1 cut(s) 709
PagI TCATGA 2 cut(s) 205, 418
PasI CCCWGGG 1 cut(s) 460
PdiI GCCGGC 1 cut(s) 165
PdmI GAANNNNTTC 2 cut(s) 112, 555
PfeI GAWTC 4 cut(s) 97, 113, 268, 620
PfoI TCCNGGA 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 532
PkrI GCNGC 3 cut(s) 8, 24, 512
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 3 cut(s) 375, 433, 459
PspEI GGTNACC 1 cut(s) 528
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 3 cut(s) 375, 433, 459
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 2 cut(s) 310, 457
PstNI CAGNNNCTG 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 408
RsaI GTAC 3 cut(s) 248, 425, 767
RsaNI GTAC 3 cut(s) 247, 424, 766
SaqAI TTAA 3 cut(s) 321, 450, 762
SatI GCNGC 3 cut(s) 7, 23, 511
Sau3AI GATC 2 cut(s) 297, 332
Sau96I GGNCC 2 cut(s) 310, 457
ScaI AGTACT 1 cut(s) 425
ScrFI CCNGG 3 cut(s) 377, 435, 461
SduI GDGCHC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 43
SgrAI CRCCGGYG 1 cut(s) 532
SinI GGWCC 1 cut(s) 310
SmlI CTYRAG 2 cut(s) 540, 761
SmoI CTYRAG 2 cut(s) 540, 761
Sse9I AATT 1 cut(s) 318
SsiI CCGC 3 cut(s) 23, 105, 526
StyD4I CCNGG 3 cut(s) 375, 433, 459
TaaI ACNGT 2 cut(s) 314, 673
TaiI ACGT 1 cut(s) 771
TaqI TCGA 4 cut(s) 144, 266, 328, 395
TasI AATT 1 cut(s) 318
TatI WGTACW 2 cut(s) 246, 423
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 4 cut(s) 97, 113, 268, 620
Tru1I TTAA 3 cut(s) 321, 450, 762
Tru9I TTAA 3 cut(s) 321, 450, 762
TscAI CASTG 2 cut(s) 36, 528
TseFI GTSAC 3 cut(s) 528, 571, 769
TseI GCWGC 2 cut(s) 6, 510
Tsp45I GTSAC 3 cut(s) 528, 571, 769
TspDTI ATGAA 6 cut(s) 89, 368, 407, 657, 675, 716
TspRI CASTG 2 cut(s) 36, 528
Vha464I CTTAAG 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 310
XceI RCATGY 1 cut(s) 709
XmnI GAANNNNTTC 2 cut(s) 112, 555
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.