pycom01g11700
NAC Family

NAC domain protein, IPR003441 source

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000197
Physical Location & Seq
Reverse (-)
12745504 .. 12747283
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11700.4

Sequence Viewer

Length: 951 bp
ATGGGAAGCAACAGAAAAACAAGAGGAGGAGGGGCATCAGACCCAGTAGGGTTCAGATTCTACCCCACTCCGGAGGAACTGGTGGACCATTACTTGAAGCTCAAGAAACAGGACAACGATTTCAAATCTGATCACATTGCTGAATTCGATGTCTGCAACTTCGACCCTTGGGATTTGGCTGCTCGCATTCCATCCGACGATATGGTGTGGTACATCTTCAGCCGAAAGGATTACAAGTACATCAACAGCACCCGGTCCAACCGAGCCACACCAGGAGGCCACTGGAAAATCACAGGGAAGGAGCGTGCGATCAAGGCTCGGCGGTCCAAAGCCGTCATTGGGAAGAAAAGGACCTTGACATTCTACCAACGTTGTCAGCCTAAACCCAAAAAAACCGACTGGGTCATGCACGAGTTCTATCTCATTGATAGTGAAGCCATCTCTAATCCTAAGCTGCATCAGAATGATTTTGTTCTCTGCCGCATGAAGAAAAATTCCGATATGGAGGATACCTCAATCGGTGAAGTTGAACTTGGCAGCTCCAGTGTGTCTAATGTTGAAGATCATGCTGCAGCTGTTGTGACTCCAGAGGATTACAGTTCCTCTACATTCCTGTCATCAGGATACATAGAGTTGGGAGATATTCCTCATGGCAATGACAATATTGATGATTGCAATGCAATGCAATCACCATTTGGGTATAATAATTATTCTTATCCCGATAAGAATGATATTTCAACCTGTGATGAAGGTGAACCTCTTGGCTTCACCATGTTTGATTTTGAGAATGAAGTTCCAGATCATATGTCTCAAGAGGTATGTCCTCCACGAGAAGAAAATCTGGAATTGTTCTTTTATCCACCTCAGCCAGAGGACTACACACTGGAGCCACTAATGAACATGACAGTGGGAAATGTTTTGCATGACAATGAGTTTCGGTCCCCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

317

Amino Acids

36.18

Weight (kDa)

4.95

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 2 cut(s) 322, 481
AclI AACGTT 1 cut(s) 370
AcsI RAATTY 2 cut(s) 143, 493
AcuI CTGAAG 1 cut(s) 202
AfaI GTAC 2 cut(s) 212, 239
AfiI CCNNNNNNNGG 2 cut(s) 70, 339
AgsI TTSAA 5 cut(s) 97, 124, 530, 560, 738
AjnI CCWGG 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 4 cut(s) 100, 454, 540, 575
AluI AGCT 4 cut(s) 100, 454, 540, 575
Alw26I GTCTC 1 cut(s) 813
Aor13HI TCCGGA 1 cut(s) 70
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 5 cut(s) 179, 454, 537, 569, 572
ApoI RAATTY 2 cut(s) 143, 493
AspS9I GGNCC 5 cut(s) 85, 255, 324, 351, 939
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 4 cut(s) 533, 681, 760, 764
AvaII GGWCC 5 cut(s) 85, 255, 324, 351, 939
BauI CACGAG 2 cut(s) 410, 828
BbvCI CCTCAGC 1 cut(s) 864
BbvI GCAGC 5 cut(s) 166, 441, 549, 556, 584
BccI CCATC 2 cut(s) 199, 446
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 273
BciVI GTATCC 2 cut(s) 502, 617
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 813
BfmI CTRYAG 1 cut(s) 570
BfuI GTATCC 2 cut(s) 502, 617
BisI GCNGC 6 cut(s) 180, 455, 481, 538, 570, 573
BlsI GCNGC 6 cut(s) 181, 456, 482, 539, 571, 574
Bme1390I CCNGG 2 cut(s) 253, 273
Bme18I GGWCC 5 cut(s) 85, 255, 324, 351, 939
BmgT120I GGNCC 5 cut(s) 85, 255, 324, 351, 939
BmiI GGNNCC 2 cut(s) 888, 941
BmrFI CCNGG 2 cut(s) 253, 273
BmrI ACTGGG 2 cut(s) 38, 409
BmsI GCATC 2 cut(s) 44, 466
BmuI ACTGGG 2 cut(s) 38, 409
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpmI CTGGAG 3 cut(s) 526, 570, 905
Bpu10I CCTNAGC 2 cut(s) 450, 864
BpuEI CTTGAG 2 cut(s) 86, 795
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 339
Bse1I ACTGG 6 cut(s) 44, 84, 287, 404, 543, 888
Bse3DI GCAATG 4 cut(s) 135, 661, 682, 687
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 2 cut(s) 70, 339
BseMI GCAATG 4 cut(s) 135, 661, 682, 687
BseMII CTCAG 1 cut(s) 878
BseNI ACTGG 6 cut(s) 44, 84, 287, 404, 543, 888
BseRI GAGGAG 2 cut(s) 39, 42
BseXI GCAGC 5 cut(s) 166, 441, 549, 556, 584
BshFI GGCC 1 cut(s) 279
BsiSI CCGG 2 cut(s) 71, 253
BslFI GGGAC 1 cut(s) 925
BslI CCNNNNNNNGG 2 cut(s) 70, 339
BsmAI GTCTC 1 cut(s) 813
BsmFI GGGAC 1 cut(s) 925
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 1 cut(s) 279
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 4 cut(s) 130, 309, 562, 799
BspACI CCGC 2 cut(s) 322, 481
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 877
BspEI TCCGGA 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 888, 941
BspMAI CTGCAG 1 cut(s) 574
BsrDI GCAATG 4 cut(s) 135, 661, 682, 687
BsrI ACTGG 6 cut(s) 44, 84, 287, 404, 543, 888
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 4 cut(s) 130, 309, 562, 799
BssSI CACGAG 2 cut(s) 410, 828
BssT1I CCWWGG 1 cut(s) 167
Bst2BI CACGAG 2 cut(s) 410, 828
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 599, 907
BstC8I GCNNGC 2 cut(s) 184, 306
BstDEI CTNAG 2 cut(s) 450, 864
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 4 cut(s) 133, 312, 565, 802
BstMAI GTCTC 1 cut(s) 813
BstMBI GATC 4 cut(s) 130, 309, 562, 799
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 251, 271
BstSFI CTRYAG 1 cut(s) 570
BstV1I GCAGC 5 cut(s) 166, 441, 549, 556, 584
BsuI GTATCC 2 cut(s) 502, 617
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 4 cut(s) 280, 550, 881, 912
Cac8I GCNNGC 2 cut(s) 184, 306
Cfr13I GGNCC 5 cut(s) 85, 255, 324, 351, 939
Csp6I GTAC 2 cut(s) 211, 238
CviAII CATG 7 cut(s) 406, 484, 566, 650, 772, 901, 923
CviQI GTAC 2 cut(s) 211, 238
DdeI CTNAG 2 cut(s) 450, 864
DpnI GATC 4 cut(s) 132, 311, 564, 801
DpnII GATC 4 cut(s) 130, 309, 562, 799
Eco130I CCWWGG 1 cut(s) 167
Eco47I GGWCC 5 cut(s) 85, 255, 324, 351, 939
Eco57I CTGAAG 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 7 cut(s) 409, 487, 569, 653, 775, 904, 926
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 1 cut(s) 925
FatI CATG 7 cut(s) 405, 483, 565, 649, 771, 900, 922
FauNDI CATATG 1 cut(s) 804
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 6 cut(s) 180, 455, 481, 538, 570, 573
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 6 cut(s) 180, 455, 481, 538, 570, 573
GluI GCNGC 6 cut(s) 180, 455, 481, 538, 570, 573
GsuI CTGGAG 3 cut(s) 526, 570, 905
HaeIII GGCC 1 cut(s) 279
HapII CCGG 2 cut(s) 71, 253
Hin1II CATG 7 cut(s) 409, 487, 569, 653, 775, 904, 926
HinfI GANTC 2 cut(s) 57, 583
HpaII CCGG 2 cut(s) 71, 253
HphI GGTGA 4 cut(s) 533, 681, 760, 764
Hpy166II GTNNAC 2 cut(s) 85, 755
Hpy188I TCNGA 6 cut(s) 40, 56, 130, 196, 462, 499
Hpy188III TCNNGA 8 cut(s) 71, 103, 587, 621, 719, 797, 812, 842
Hpy8I GTNNAC 2 cut(s) 85, 755
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 292, 743
HpyCH4III ACNGT 2 cut(s) 599, 907
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 8 cut(s) 156, 409, 457, 572, 675, 680, 685, 922
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 450, 864
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 7 cut(s) 409, 487, 569, 653, 775, 904, 926
Kpn2I TCCGGA 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 4 cut(s) 130, 309, 562, 799
LmnI GCTCC 3 cut(s) 301, 545, 886
Lsp1109I GCAGC 5 cut(s) 166, 441, 549, 556, 584
LweI GCATC 2 cut(s) 44, 466
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 580
MalI GATC 4 cut(s) 132, 311, 564, 801
MboI GATC 4 cut(s) 130, 309, 562, 799
MboII GAAGA 5 cut(s) 208, 355, 499, 572, 845
MluCI AATT 4 cut(s) 143, 493, 706, 845
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 2 cut(s) 219, 282
MroI TCCGGA 1 cut(s) 70
MslI CAYNNNNRTG 4 cut(s) 462, 654, 905, 927
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 2 cut(s) 71, 253
MspR9I CCNGG 2 cut(s) 253, 273
Mva1269I GAATGC 1 cut(s) 186
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 804
NdeII GATC 4 cut(s) 130, 309, 562, 799
NlaIII CATG 7 cut(s) 409, 487, 569, 653, 775, 904, 926
NlaIV GGNNCC 2 cut(s) 888, 941
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 580
PctI GAATGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 401
PkrI GCNGC 6 cut(s) 181, 456, 482, 539, 571, 574
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PpuMI RGGWCCY 1 cut(s) 351
Psp1406I AACGTT 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 888, 941
PspPI GGNCC 5 cut(s) 85, 255, 324, 351, 939
PspPPI RGGWCCY 1 cut(s) 351
PstI CTGCAG 1 cut(s) 574
PsyI GACNNNGTC 1 cut(s) 401
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 212, 239
RsaNI GTAC 2 cut(s) 211, 238
RseI CAYNNNNRTG 4 cut(s) 462, 654, 905, 927
SatI GCNGC 6 cut(s) 180, 455, 481, 538, 570, 573
Sau3AI GATC 4 cut(s) 130, 309, 562, 799
Sau96I GGNCC 5 cut(s) 85, 255, 324, 351, 939
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 2 cut(s) 253, 273
SfaNI GCATC 2 cut(s) 44, 466
SfcI CTRYAG 1 cut(s) 570
SinI GGWCC 5 cut(s) 85, 255, 324, 351, 939
SmiMI CAYNNNNRTG 4 cut(s) 462, 654, 905, 927
SmlI CTYRAG 2 cut(s) 101, 810
SmoI CTYRAG 2 cut(s) 101, 810
Sse9I AATT 4 cut(s) 143, 493, 706, 845
SsiI CCGC 2 cut(s) 322, 481
SspI AATATT 1 cut(s) 664
StyD4I CCNGG 2 cut(s) 251, 271
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 599, 907
TaiI ACGT 1 cut(s) 373
TaqI TCGA 2 cut(s) 147, 162
TaqII GACCGA 1 cut(s) 927
TasI AATT 4 cut(s) 143, 493, 706, 845
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 483
TfiI GAWTC 1 cut(s) 57
TscAI CASTG 4 cut(s) 287, 550, 888, 912
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 5 cut(s) 179, 454, 537, 569, 572
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 4 cut(s) 500, 762, 804, 911
TspRI CASTG 4 cut(s) 287, 550, 888, 912
Tth111I GACNNNGTC 1 cut(s) 401
VpaK11BI GGWCC 5 cut(s) 85, 255, 324, 351, 939
XapI RAATTY 2 cut(s) 143, 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.