pycom01g11720
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
12765457 .. 12767073
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11720.1

Sequence Viewer

Length: 918 bp
ATGATGTATAATTTGCAGCATTGTTTAACAATTTTTATGAGGATTGGTTTTTGCAACTTTATTGTGCAGGGGGATTTAGTTCTCTGTTGCGTAAGGAAGAAATCAGGTGAGAAAGTGGATGCTGCAAACTGTCATGAACTTGAATCGAGTACTAACAACAACGCATCTGATTTTGGAAACCAACAGTTACTAGCACCTCGTATGGATATTGAAGAGGAACACACTCCGCAACAACAAAGTATGGACATTTTTGAGCGGGCAAAGCGTCGTATGCTTAATAATGATTACCATGAAAAGGAAACGAGTTTACAAATGCTTAGTGAGCCACCCGTTGATTCAAGCCACCCCAGAAGACAGGACGTTGTTATGCTTTACCAGAAACGGGCTGCTTCCCCTGTCAATGTAGTACCTAATCAATTAGTCACTGATGAACTTTCTGGTACACGTCGTCAATTAGTTAATGATAAGCATTCTGGTACACATCAAAGAACAAGCAGGCTGCAACGGGAATCAAGACACAGCAATGCCTTAAACGTAAAGAATGCTTCCTCTGTGGATGTAGATGCAGAATTACCTCAGATTAACCGTAGTCAATTAGCCCCTGAGGAATACCATAACAAAGAAAGAACACGCAGAAGAACATATCCAACAGGTGCCCTCGAAGCACTAAGCAAACAGAAAGAATTAAAACAGCAGCAAAGCAAGGTGAAAGAAGCTGCAGAGCCTCGAGCTGCTGTTGATTTTCCCCCGAAGAAGACCTCTATAACAGAGTCTAACAAAGAAGCAGAGGTGGCTCAAGGCAATAATGCAAAAAAGGGTATGAAGCAGACGCAGAATGCAACAACCGCCAGCAATTGGAAGGGCTGTTCTTTCATTTCATGGAAGACATTGTTAAGGAAGATATCTCAATTGATTTAA

Protein Analysis

306

Amino Acids

34.72

Weight (kDa)

9.24

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 653
AccB7I CCANNNNNTGG 1 cut(s) 855
AccBSI CCGCTC 1 cut(s) 256
AciI CCGC 3 cut(s) 227, 256, 846
AfaI GTAC 4 cut(s) 151, 408, 442, 478
AfiI CCNNNNNNNGG 3 cut(s) 295, 382, 855
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 3 cut(s) 143, 212, 339
AjiI CACGTC 1 cut(s) 446
AloI GAACNNNNNNTCC 2 cut(s) 850, 882
AluBI AGCT 2 cut(s) 716, 731
AluI AGCT 2 cut(s) 716, 731
Ama87I CYCGRG 1 cut(s) 726
ApeKI GCWGC 7 cut(s) 16, 122, 386, 499, 694, 716, 731
AsuHPI GGTGA 2 cut(s) 119, 718
AvaI CYCGRG 1 cut(s) 726
AxyI CCTNAGG 1 cut(s) 603
BaeGI GKGCMC 1 cut(s) 658
BanI GGYRCC 1 cut(s) 653
BbsI GAAGAC 3 cut(s) 358, 761, 890
BbvI GCAGC 7 cut(s) 28, 109, 373, 486, 703, 706, 718
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 717
BisI GCNGC 7 cut(s) 17, 123, 387, 500, 695, 717, 732
BlsI GCNGC 7 cut(s) 18, 124, 388, 501, 696, 718, 733
BmcAI AGTACT 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 726
BmgBI CACGTC 1 cut(s) 446
BmiI GGNNCC 1 cut(s) 655
BmsI GCATC 3 cut(s) 109, 173, 553
BpiI GAAGAC 3 cut(s) 358, 761, 890
BpuEI CTTGAG 1 cut(s) 780
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 382, 855
Bse21I CCTNAGG 1 cut(s) 603
Bse3DI GCAATG 1 cut(s) 529
BseGI GGATG 2 cut(s) 124, 562
BseLI CCNNNNNNNGG 3 cut(s) 295, 382, 855
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 590, 594
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 7 cut(s) 28, 109, 373, 486, 703, 706, 718
BsgI GTGCAG 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 653
BsiHKCI CYCGRG 1 cut(s) 726
BslI CCNNNNNNNGG 3 cut(s) 295, 382, 855
BsmI GAATGC 3 cut(s) 469, 547, 841
BsoBI CYCGRG 1 cut(s) 726
Bsp1286I GDGCHC 1 cut(s) 658
BspACI CCGC 3 cut(s) 227, 256, 846
BspCNI CTCAG 2 cut(s) 589, 595
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 655
BspMAI CTGCAG 1 cut(s) 721
BspT107I GGYRCC 1 cut(s) 653
BsrBI CCGCTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 529
Bst4CI ACNGT 3 cut(s) 131, 186, 587
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 258, 497, 850
BstDEI CTNAG 4 cut(s) 317, 576, 603, 668
BstF5I GGATG 2 cut(s) 124, 562
BstMWI GCNNNNNNNGC 6 cut(s) 262, 271, 322, 662, 791, 845
BstSFI CTRYAG 1 cut(s) 717
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 7 cut(s) 28, 109, 373, 486, 703, 706, 718
BstV2I GAAGAC 3 cut(s) 358, 761, 890
Bsu36I CCTNAGG 1 cut(s) 603
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 2 cut(s) 124, 562
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 3 cut(s) 258, 497, 850
CciI TCATGA 1 cut(s) 133
CseI GACGC 2 cut(s) 254, 838
Csp6I GTAC 4 cut(s) 150, 407, 441, 477
CviAII CATG 3 cut(s) 134, 290, 879
CviQI GTAC 4 cut(s) 150, 407, 441, 477
DdeI CTNAG 4 cut(s) 317, 576, 603, 668
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco32I GATATC 1 cut(s) 903
Eco81I CCTNAGG 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 726
EcoRV GATATC 1 cut(s) 903
FaeI CATG 3 cut(s) 137, 293, 882
FatI CATG 3 cut(s) 133, 289, 878
FauI CCCGC 1 cut(s) 249
Fnu4HI GCNGC 7 cut(s) 17, 123, 387, 500, 695, 717, 732
FokI GGATG 2 cut(s) 131, 569
Fsp4HI GCNGC 7 cut(s) 17, 123, 387, 500, 695, 717, 732
FspBI CTAG 1 cut(s) 191
GluI GCNGC 7 cut(s) 17, 123, 387, 500, 695, 717, 732
HgaI GACGC 2 cut(s) 254, 838
Hin1II CATG 3 cut(s) 137, 293, 882
HinfI GANTC 4 cut(s) 143, 335, 509, 770
HphI GGTGA 2 cut(s) 119, 718
Hpy166II GTNNAC 3 cut(s) 308, 443, 479
Hpy188I TCNGA 2 cut(s) 169, 579
Hpy188III TCNNGA 2 cut(s) 134, 513
Hpy8I GTNNAC 3 cut(s) 308, 443, 479
Hpy99I CGWCG 2 cut(s) 270, 450
HpyAV CCTTC 1 cut(s) 853
HpyCH4III ACNGT 3 cut(s) 131, 186, 587
HpyCH4IV ACGT 3 cut(s) 360, 445, 534
HpyCH4V TGCA 9 cut(s) 16, 54, 67, 125, 502, 566, 719, 809, 839
HpyF10VI GCNNNNNNNGC 6 cut(s) 262, 271, 322, 662, 791, 845
HpyF3I CTNAG 4 cut(s) 317, 576, 603, 668
HpySE526I ACGT 3 cut(s) 360, 445, 534
Hsp92II CATG 3 cut(s) 137, 293, 882
Lsp1109I GCAGC 7 cut(s) 28, 109, 373, 486, 703, 706, 718
LweI GCATC 3 cut(s) 109, 173, 553
MaeI CTAG 1 cut(s) 191
MaeII ACGT 3 cut(s) 360, 445, 534
MaeIII GTNAC 2 cut(s) 186, 421
MbiI CCGCTC 1 cut(s) 256
MboII GAAGA 8 cut(s) 109, 224, 363, 648, 763, 766, 895, 910
MfeI CAATTG 2 cut(s) 853, 908
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 9 cut(s) 10, 30, 416, 452, 569, 593, 683, 853, 908
MlyI GAGTC 1 cut(s) 779
MmeI TCCRAC 1 cut(s) 671
MseI TTAA 8 cut(s) 26, 276, 459, 530, 582, 686, 893, 916
MslI CAYNNNNRTG 1 cut(s) 522
MunI CAATTG 2 cut(s) 853, 908
Mva1269I GAATGC 3 cut(s) 469, 547, 841
MwoI GCNNNNNNNGC 6 cut(s) 262, 271, 322, 662, 791, 845
NlaIII CATG 3 cut(s) 137, 293, 882
NlaIV GGNNCC 1 cut(s) 655
NmuCI GTSAC 1 cut(s) 421
PaeR7I CTCGAG 1 cut(s) 726
PagI TCATGA 1 cut(s) 133
PctI GAATGC 3 cut(s) 469, 547, 841
PfeI GAWTC 3 cut(s) 143, 335, 509
PflMI CCANNNNNTGG 1 cut(s) 855
PkrI GCNGC 7 cut(s) 18, 124, 388, 501, 696, 718, 733
PleI GAGTC 1 cut(s) 778
PpsI GAGTC 1 cut(s) 778
PspN4I GGNNCC 1 cut(s) 655
PspXI VCTCGAGB 1 cut(s) 726
PstI CTGCAG 1 cut(s) 721
RsaI GTAC 4 cut(s) 151, 408, 442, 478
RsaNI GTAC 4 cut(s) 150, 407, 441, 477
RseI CAYNNNNRTG 1 cut(s) 522
SaqAI TTAA 8 cut(s) 26, 276, 459, 530, 582, 686, 893, 916
SatI GCNGC 7 cut(s) 17, 123, 387, 500, 695, 717, 732
ScaI AGTACT 1 cut(s) 151
SchI GAGTC 1 cut(s) 779
SduI GDGCHC 1 cut(s) 658
SfaNI GCATC 3 cut(s) 109, 173, 553
SfcI CTRYAG 1 cut(s) 717
Sfr274I CTCGAG 1 cut(s) 726
SlaI CTCGAG 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 2 cut(s) 726, 795
SmoI CTYRAG 2 cut(s) 726, 795
Sse9I AATT 9 cut(s) 10, 30, 416, 452, 569, 593, 683, 853, 908
SsiI CCGC 3 cut(s) 227, 256, 846
SspMI CTAG 1 cut(s) 191
TaaI ACNGT 3 cut(s) 131, 186, 587
TaiI ACGT 3 cut(s) 363, 448, 537
TaqI TCGA 3 cut(s) 146, 660, 727
TasI AATT 9 cut(s) 10, 30, 416, 452, 569, 593, 683, 853, 908
TatI WGTACW 1 cut(s) 149
TfiI GAWTC 3 cut(s) 143, 335, 509
Tru1I TTAA 8 cut(s) 26, 276, 459, 530, 582, 686, 893, 916
Tru9I TTAA 8 cut(s) 26, 276, 459, 530, 582, 686, 893, 916
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 7 cut(s) 16, 122, 386, 499, 694, 716, 731
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 6 cut(s) 150, 306, 444, 836, 862, 867
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 1 cut(s) 855
XhoI CTCGAG 1 cut(s) 726
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.