pycom01g11650
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000197
Physical Location & Seq
Reverse (-)
12674007 .. 12676407
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11650.3

Sequence Viewer

Length: 1008 bp
ATGGGTAGCAGCAGCAGCAGCAGCATCGCACCTGAAGAAGGAGATGCAGTGCGTGTGAATGTGAGCCGACTGCCTGGGTTCGGATTCTCCCCCACCGATGAGTTGCTGATCAGGTACTACCTGAAGAACAAGATAGAGGGGACGGACTCCCATTTCCGCCGCATCTTCCCTGAAATCGATCTCAGCAAGTACGAGCCCGGCGATATTCCTGCATTCGTCCCAGAAGTTAATGCGAATGAGTGGGTCTTCTTCACCCGCCCCAAATACAAGGACAGCCGCTGCCCTCGCCGCGACCGGCTCACGCATCAAGGCTTTTACAAGATCACAGGAGATGAGCGGGAGATCAGGGCTGAAGAATCCAAAGATGTGATTGGGAAGAAGATTATTCTGACCTTCCACGAAGGTCGTGGACCAAAAGCAAAGAAGTCAGATTGGGTAATCCATGAGTATTATTGTACAAAAACTGAGGTGGGTTCTAAACCCACCAAGCAGATGGACTTCGTCCTCTGCCGCCTGAAGAACAGGTCACCTAGTTATAAGAAGCCGAAGGGTGATCCAACCCGCGGCGAATTACCTGATTCAGATGCTAACTCGGAAGACGATCAAGCTGCTGGAGGTGATGTGATTCCAGGGCCAGTGGAACATCTGGGATACAAAGAGCTAGGAGATTTTAATAACTCTGAGTCTCCAGATGGTTCTTGTCTTATAGACTGTATTAACATTTTGAGCTTTGATGATGGTGATGATGAAACTGGTGACGGGAAATTCCCGGATTTGGATCGATCCAGCTGCATCTGCCAGCCATGTGTTCAACCAGAAAAATATCTAAGAAGCGTTCTGCATGCCGATATTTGTGACAACGGCTACAACAATTGGCAACCTACATGTTGGGATAAAGATTCTTATCTTACAGATAAGAAGAATATTTCAACCAATGATAAGGATAAACAATATAGCAGCATTGCTTCTAATTTTGATAATCAAGCTACGAATAAAAGGAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

336

Amino Acids

37.91

Weight (kDa)

5.45

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AccBSI CCGCTC 1 cut(s) 337
AccII CGCG 2 cut(s) 291, 564
AciI CCGC 9 cut(s) 157, 160, 256, 277, 289, 337, 511, 562, 564
AclWI GGATC 3 cut(s) 548, 777, 786
AcsI RAATTY 1 cut(s) 764
AcuI CTGAAG 4 cut(s) 54, 143, 372, 536
AfaI GTAC 3 cut(s) 116, 191, 457
AfiI CCNNNNNNNGG 4 cut(s) 38, 80, 563, 775
AflIII ACRYGT 1 cut(s) 884
AgsI TTSAA 2 cut(s) 812, 930
AjnI CCWGG 2 cut(s) 73, 628
AluBI AGCT 5 cut(s) 608, 661, 729, 789, 986
AluI AGCT 5 cut(s) 608, 661, 729, 789, 986
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 3 cut(s) 548, 777, 786
AlwNI CAGNNNCTG 1 cut(s) 279
AoxI GGCC 1 cut(s) 632
ApeKI GCWGC 9 cut(s) 9, 12, 15, 18, 21, 279, 608, 789, 957
ApoI RAATTY 1 cut(s) 764
AspS9I GGNCC 2 cut(s) 410, 632
AsuC2I CCSGG 2 cut(s) 198, 770
AsuHPI GGTGA 6 cut(s) 244, 519, 563, 629, 752, 767
AvaII GGWCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 238, 603
BbvI GCAGC 9 cut(s) 21, 24, 27, 30, 33, 266, 595, 776, 969
BccI CCATC 3 cut(s) 487, 686, 731
BceAI ACGGC 1 cut(s) 877
BcgI CGANNNNNNTGC 8 cut(s) 7, 41, 191, 225, 590, 624, 771, 805
BciT130I CCWGG 2 cut(s) 75, 630
BciVI GTATCC 1 cut(s) 644
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 2 cut(s) 198, 770
BcoDI GTCTC 1 cut(s) 690
BfaI CTAG 2 cut(s) 531, 662
BfuI GTATCC 1 cut(s) 644
Bme1390I CCNGG 4 cut(s) 75, 198, 630, 770
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 410, 632
BmrFI CCNGG 4 cut(s) 75, 198, 630, 770
BmsI GCATC 6 cut(s) 33, 34, 171, 313, 574, 801
BpiI GAAGAC 2 cut(s) 238, 603
BpmI CTGGAG 2 cut(s) 633, 672
BpuMI CCSGG 2 cut(s) 198, 770
Bsa29I ATCGAT 2 cut(s) 177, 781
BsaBI GATNNNNATC 2 cut(s) 777, 903
BsaJI CCNNGG 3 cut(s) 74, 562, 629
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 606, 636
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 80, 563, 775
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 2 cut(s) 635, 757
Bse3DI GCAATG 1 cut(s) 960
Bse8I GATNNNNATC 2 cut(s) 777, 903
BseBI CCWGG 2 cut(s) 75, 630
BseCI ATCGAT 2 cut(s) 177, 781
BseDI CCNNGG 3 cut(s) 74, 562, 629
BseJI GATNNNNATC 2 cut(s) 777, 903
BseLI CCNNNNNNNGG 4 cut(s) 38, 80, 563, 775
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 3 cut(s) 196, 456, 672
BseNI ACTGG 2 cut(s) 635, 757
BseXI GCAGC 9 cut(s) 21, 24, 27, 30, 33, 266, 595, 776, 969
Bsh1236I CGCG 2 cut(s) 291, 564
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 1 cut(s) 634
BshVI ATCGAT 2 cut(s) 177, 781
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 198, 295, 770
BslFI GGGAC 2 cut(s) 154, 203
BslI CCNNNNNNNGG 4 cut(s) 38, 80, 563, 775
BsmAI GTCTC 1 cut(s) 690
BsmFI GGGAC 2 cut(s) 154, 203
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 634
Bsp1286I GDGCHC 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 455
Bsp143I GATC 8 cut(s) 108, 178, 321, 342, 553, 601, 778, 782
BspACI CCGC 9 cut(s) 157, 160, 256, 277, 289, 337, 511, 562, 564
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 3 cut(s) 195, 457, 673
BspDI ATCGAT 2 cut(s) 177, 781
BspFNI CGCG 2 cut(s) 291, 564
BspPI GGATC 3 cut(s) 548, 777, 786
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 960
BsrFI RCCGGY 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 455
BsrI ACTGG 2 cut(s) 635, 757
BssAI RCCGGY 1 cut(s) 294
BssECI CCNNGG 3 cut(s) 74, 562, 629
BssMI GATC 8 cut(s) 108, 178, 321, 342, 553, 601, 778, 782
Bst2UI CCWGG 2 cut(s) 75, 630
Bst4CI ACNGT 1 cut(s) 713
Bst6I CTCTTC 1 cut(s) 995
BstAUI TGTACA 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 800, 843
BstDEI CTNAG 4 cut(s) 182, 465, 681, 827
BstDSI CCRYGG 1 cut(s) 562
BstEII GGTNACC 1 cut(s) 525
BstENI CCTNNNNNAGG 1 cut(s) 36
BstFNI CGCG 2 cut(s) 291, 564
BstKTI GATC 8 cut(s) 111, 181, 324, 345, 556, 604, 781, 785
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 8 cut(s) 108, 178, 321, 342, 553, 601, 778, 782
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 6 cut(s) 15, 18, 21, 285, 288, 795
BstNI CCWGG 2 cut(s) 75, 630
BstNSI RCATGY 2 cut(s) 845, 888
BstPI GGTNACC 1 cut(s) 525
BstSCI CCNGG 4 cut(s) 73, 196, 628, 768
BstUI CGCG 2 cut(s) 291, 564
BstV1I GCAGC 9 cut(s) 21, 24, 27, 30, 33, 266, 595, 776, 969
BstV2I GAAGAC 2 cut(s) 238, 603
BstXI CCANNNNNNTGG 1 cut(s) 493
Bsu15I ATCGAT 2 cut(s) 177, 781
BsuI GTATCC 1 cut(s) 644
BsuRI GGCC 1 cut(s) 634
BsuTUI ATCGAT 2 cut(s) 177, 781
BtgI CCRYGG 1 cut(s) 562
BtgZI GCGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 54, 642
Cac8I GCNNGC 2 cut(s) 800, 843
CaiI CAGNNNCTG 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 410, 632
Cfr42I CCGCGG 1 cut(s) 565
ClaI ATCGAT 2 cut(s) 177, 781
Csp6I GTAC 3 cut(s) 115, 190, 456
CviAII CATG 4 cut(s) 443, 804, 842, 885
CviQI GTAC 3 cut(s) 115, 190, 456
DdeI CTNAG 4 cut(s) 182, 465, 681, 827
DpnI GATC 8 cut(s) 110, 180, 323, 344, 555, 603, 780, 784
DpnII GATC 8 cut(s) 108, 178, 321, 342, 553, 601, 778, 782
Eam1104I CTCTTC 1 cut(s) 995
EarI CTCTTC 1 cut(s) 995
EciI GGCGGA 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 4 cut(s) 54, 143, 372, 536
Eco91I GGTNACC 1 cut(s) 525
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoO65I GGTNACC 1 cut(s) 525
EcoRII CCWGG 2 cut(s) 73, 628
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 4 cut(s) 446, 807, 845, 888
FaiI YATR 7 cut(s) 444, 537, 707, 805, 843, 886, 954
FaqI GGGAC 2 cut(s) 154, 203
FatI CATG 4 cut(s) 442, 803, 841, 884
FauI CCCGC 3 cut(s) 263, 330, 569
FbaI TGATCA 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 198
FspBI CTAG 2 cut(s) 531, 662
GsuI CTGGAG 2 cut(s) 633, 672
HaeIII GGCC 1 cut(s) 634
HapII CCGG 3 cut(s) 198, 295, 770
Hin1II CATG 4 cut(s) 446, 807, 845, 888
HinfI GANTC 7 cut(s) 84, 146, 356, 578, 625, 683, 899
HpaII CCGG 3 cut(s) 198, 295, 770
HphI GGTGA 6 cut(s) 244, 519, 563, 629, 752, 767
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 6 cut(s) 83, 390, 430, 583, 595, 682
Hpy188III TCNNGA 1 cut(s) 689
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 4 cut(s) 32, 395, 403, 541
HpyCH4III ACNGT 1 cut(s) 713
HpyCH4V TGCA 4 cut(s) 47, 212, 792, 841
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 18, 21, 285, 288, 795
HpyF3I CTNAG 4 cut(s) 182, 465, 681, 827
Hsp92II CATG 4 cut(s) 446, 807, 845, 888
Ksp22I TGATCA 1 cut(s) 108
KspI CCGCGG 1 cut(s) 565
Kzo9I GATC 8 cut(s) 108, 178, 321, 342, 553, 601, 778, 782
Lsp1109I GCAGC 9 cut(s) 21, 24, 27, 30, 33, 266, 595, 776, 969
LweI GCATC 6 cut(s) 33, 34, 171, 313, 574, 801
MaeI CTAG 2 cut(s) 531, 662
MaeIII GTNAC 3 cut(s) 525, 755, 854
MalI GATC 8 cut(s) 110, 180, 323, 344, 555, 603, 780, 784
MbiI CCGCTC 1 cut(s) 337
MboI GATC 8 cut(s) 108, 178, 321, 342, 553, 601, 778, 782
MfeI CAATTG 1 cut(s) 871
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 4 cut(s) 569, 764, 871, 970
MlyI GAGTC 2 cut(s) 140, 692
MmeI TCCRAC 1 cut(s) 581
MnlI CCTC 6 cut(s) 130, 294, 460, 515, 608, 996
MseI TTAA 3 cut(s) 228, 672, 717
MspA1I CMGCKG 3 cut(s) 279, 564, 789
MspI CCGG 3 cut(s) 198, 295, 770
MspR9I CCNGG 4 cut(s) 75, 198, 630, 770
MunI CAATTG 1 cut(s) 871
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 2 cut(s) 75, 630
MvnI CGCG 2 cut(s) 291, 564
MwoI GCNNNNNNNGC 6 cut(s) 15, 18, 21, 285, 288, 795
NciI CCSGG 2 cut(s) 198, 770
NdeII GATC 8 cut(s) 108, 178, 321, 342, 553, 601, 778, 782
NlaIII CATG 4 cut(s) 446, 807, 845, 888
NmuCI GTSAC 3 cut(s) 525, 755, 854
NspI RCATGY 2 cut(s) 845, 888
PaeI GCATGC 1 cut(s) 845
PciI ACATGT 1 cut(s) 884
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 5 cut(s) 84, 356, 578, 625, 899
PflFI GACNNNGTC 1 cut(s) 500
PfoI TCCNGGA 1 cut(s) 768
PleI GAGTC 2 cut(s) 140, 691
PpsI GAGTC 2 cut(s) 140, 691
PscI ACATGT 1 cut(s) 884
PsiI TTATAA 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 73, 628
PspEI GGTNACC 1 cut(s) 525
PspGI CCWGG 2 cut(s) 73, 628
PspPI GGNCC 2 cut(s) 410, 632
PstNI CAGNNNCTG 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 789
RsaI GTAC 3 cut(s) 116, 191, 457
RsaNI GTAC 3 cut(s) 115, 190, 456
SacII CCGCGG 1 cut(s) 565
SaqAI TTAA 3 cut(s) 228, 672, 717
Sau3AI GATC 8 cut(s) 108, 178, 321, 342, 553, 601, 778, 782
Sau96I GGNCC 2 cut(s) 410, 632
SchI GAGTC 2 cut(s) 140, 692
ScrFI CCNGG 4 cut(s) 75, 198, 630, 770
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 6 cut(s) 33, 34, 171, 313, 574, 801
Sfr303I CCGCGG 1 cut(s) 565
SgrBI CCGCGG 1 cut(s) 565
SinI GGWCC 1 cut(s) 410
SphI GCATGC 1 cut(s) 845
Sse9I AATT 4 cut(s) 569, 764, 871, 970
SsiI CCGC 9 cut(s) 157, 160, 256, 277, 289, 337, 511, 562, 564
SspI AATATT 1 cut(s) 925
SspMI CTAG 2 cut(s) 531, 662
StyD4I CCNGG 4 cut(s) 73, 196, 628, 768
TaaI ACNGT 1 cut(s) 713
TaqI TCGA 2 cut(s) 177, 781
TasI AATT 4 cut(s) 569, 764, 871, 970
TatI WGTACW 1 cut(s) 455
TauI GCSGC 5 cut(s) 162, 279, 291, 513, 567
TfiI GAWTC 5 cut(s) 84, 356, 578, 625, 899
Tru1I TTAA 3 cut(s) 228, 672, 717
Tru9I TTAA 3 cut(s) 228, 672, 717
TscAI CASTG 2 cut(s) 54, 642
TseFI GTSAC 3 cut(s) 525, 755, 854
TseI GCWGC 9 cut(s) 9, 12, 15, 18, 21, 279, 608, 789, 957
Tsp45I GTSAC 3 cut(s) 525, 755, 854
TspDTI ATGAA 1 cut(s) 762
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 54, 642
Tth111I GACNNNGTC 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 410
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 764
XceI RCATGY 2 cut(s) 845, 888
XcmI CCANNNNNNNNNTGG 2 cut(s) 404, 490
XspI CTAG 2 cut(s) 531, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.