MD07G1163200.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000197
Physical Location & Seq
Reverse (-)
23835271 .. 23837822
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1163200.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGAAACACCGGGAAGAAAGAGAAAAACAAGAGGAGGAGGGGGTTCAGGGCAGGTAGGGTTCAGATTCCACCCCACCGGGGAGGAACTGGTGGACCATTACTTGAAGCTCAAGAAACAGGACAAGGATTTCCAAGCTGAAAACATCCCTGAAGTCGATGTCTGCAACTTCGACCCTGGGGATTTGGCTGCTCGCATGCCATCCGACGATATGGAGTGGTACTTCTTCGGTCGAAAGAATTATAAGTACAAGAACAGCAAGCGGTCCAACAGAACCACACCAGGAGGCTACTGGAAAATCACAGGCAAGGAGCGTGATATCAAGGCTCGGCGGTCCAAAGCTGTCATTGGTAAGAAGAGGACCTTGACGTTCTACCGGCGTTGTGAGCCTAAACCGAAAAAAACCAACTGGGTCATGCACGAGCACGATCGCATTGATAGTGAAGCCAATCCTAAACTGCCTCAGGATTTCGTTATCTGTCGCATGAAGAAAAAATCCGATGAGGAGGATACCTCAATCGGTGAAGTTGAACTTGGCAGCTGTAGTGTGTCTAATGTTGAAGATCATGCTGCAGCTGTTGTGACTCCAGGGGATAACAGTTCCTCTACACCCCTATCATCCGGATACATAGAGCTGGAAGATGTTCTGCAAGCCAATGGCACCAATGATGATTGTAATGCAATACAATCACCATTTGGAGATAATAATTATTCTTATATTAATAAGAATGATATTTCAACCTGTGATGAAGGTGAACCTCATAGTTTCACCGTATCTGATTTAAAAAATGAAGCTCCACATAATATGTCTCAACAGTCCCAAAACGACATGGATTCACTCTGTTTACATGTCGCCCAAGAGTCACCAACATGTGTTATATCCAAGAATAATGTTTCTACCAGTGATGATGATGAACAATTTAAGAACTCCATTTCTAATTTTGAAAATCAAGCTACGAATAAAAGGATTTCAGAGGTATGTCCTCCACCAGAAGAAGATATGGAATTTTTCTTTGATCTACCATTTTTCTTTGATCTACCTCAACTAGAGGACTACACACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

355

Amino Acids

40.14

Weight (kDa)

5.09

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 142 1.4e-37 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 659
AccIII TCCGGA 1 cut(s) 620
AciI CCGC 2 cut(s) 262, 331
AcsI RAATTY 1 cut(s) 1004
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 221, 248
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 2 cut(s) 847, 869
AgsI TTSAA 5 cut(s) 106, 530, 560, 738, 944
AjnI CCWGG 3 cut(s) 175, 280, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 8 cut(s) 109, 137, 341, 540, 575, 634, 794, 953
AluI AGCT 8 cut(s) 109, 137, 341, 540, 575, 634, 794, 953
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 813
Aor13HI TCCGGA 1 cut(s) 620
ApeKI GCWGC 4 cut(s) 188, 537, 569, 572
ApoI RAATTY 1 cut(s) 1004
AseI ATTAAT 1 cut(s) 720
Asp700I GAANNNNTTC 1 cut(s) 642
AspS9I GGNCC 4 cut(s) 94, 264, 333, 360
AsuC2I CCSGG 2 cut(s) 12, 79
AsuHPI GGTGA 5 cut(s) 533, 681, 760, 764, 855
AvaII GGWCC 4 cut(s) 94, 264, 333, 360
AxyI CCTNAGG 1 cut(s) 462
BanI GGYRCC 1 cut(s) 659
BauI CACGAG 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 4 cut(s) 175, 549, 556, 584
BccI CCATC 1 cut(s) 208
BciT130I CCWGG 3 cut(s) 177, 282, 588
BciVI GTATCC 2 cut(s) 502, 617
BcnI CCSGG 2 cut(s) 12, 79
BcoDI GTCTC 1 cut(s) 813
BfaI CTAG 1 cut(s) 1046
BfmI CTRYAG 3 cut(s) 541, 570, 1061
BfuAI ACCTGC 1 cut(s) 43
BfuI GTATCC 2 cut(s) 502, 617
BisI GCNGC 4 cut(s) 189, 538, 570, 573
BlsI GCNGC 4 cut(s) 190, 539, 571, 574
Bme1390I CCNGG 5 cut(s) 12, 79, 177, 282, 588
Bme18I GGWCC 4 cut(s) 94, 264, 333, 360
BmgT120I GGNCC 4 cut(s) 94, 264, 333, 360
BmiI GGNNCC 1 cut(s) 661
BmrFI CCNGG 5 cut(s) 12, 79, 177, 282, 588
BmrI ACTGGG 1 cut(s) 418
BmuI ACTGGG 1 cut(s) 418
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpmI CTGGAG 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 12, 79
BsaJI CCNNGG 4 cut(s) 78, 175, 176, 587
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 375
Bse1I ACTGG 4 cut(s) 93, 296, 413, 900
Bse21I CCTNAGG 1 cut(s) 462
BseAI TCCGGA 1 cut(s) 620
BseBI CCWGG 3 cut(s) 177, 282, 588
BseDI CCNNGG 4 cut(s) 78, 175, 176, 587
BseGI GGATG 3 cut(s) 144, 200, 617
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 4 cut(s) 93, 296, 413, 900
BseRI GAGGAG 3 cut(s) 48, 51, 518
BseXI GCAGC 4 cut(s) 175, 549, 556, 584
Bsh1285I CGRYCG 2 cut(s) 232, 430
BshNI GGYRCC 1 cut(s) 659
BsiEI CGRYCG 2 cut(s) 232, 430
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 4 cut(s) 11, 78, 376, 621
BslFI GGGAC 1 cut(s) 802
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 813
BsmFI GGGAC 1 cut(s) 802
Bsp1286I GDGCHC 1 cut(s) 426
Bsp13I TCCGGA 1 cut(s) 620
Bsp143I GATC 4 cut(s) 427, 562, 1015, 1033
BspACI CCGC 2 cut(s) 262, 331
BspCNI CTCAG 1 cut(s) 475
BspEI TCCGGA 1 cut(s) 620
BspLI GGNNCC 1 cut(s) 661
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 659
BsrFI RCCGGY 1 cut(s) 375
BsrI ACTGG 4 cut(s) 93, 296, 413, 900
BssAI RCCGGY 1 cut(s) 375
BssECI CCNNGG 4 cut(s) 78, 175, 176, 587
BssMI GATC 4 cut(s) 427, 562, 1015, 1033
BssSI CACGAG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 3 cut(s) 177, 282, 588
Bst4CI ACNGT 4 cut(s) 599, 772, 816, 1062
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 4 cut(s) 193, 197, 260, 651
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 3 cut(s) 144, 200, 617
BstKTI GATC 4 cut(s) 430, 565, 1018, 1036
BstMAI GTCTC 1 cut(s) 813
BstMBI GATC 4 cut(s) 427, 562, 1015, 1033
BstMCI CGRYCG 2 cut(s) 232, 430
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 3 cut(s) 177, 282, 588
BstNSI RCATGY 3 cut(s) 199, 851, 873
BstSCI CCNGG 5 cut(s) 10, 77, 175, 280, 586
BstSFI CTRYAG 3 cut(s) 541, 570, 1061
BstV1I GCAGC 4 cut(s) 175, 549, 556, 584
Bsu36I CCTNAGG 1 cut(s) 462
BsuI GTATCC 2 cut(s) 502, 617
BtsCI GGATG 3 cut(s) 144, 200, 617
BtsIMutI CAGTG 2 cut(s) 907, 1058
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 4 cut(s) 193, 197, 260, 651
Cfr10I RCCGGY 1 cut(s) 375
Cfr13I GGNCC 4 cut(s) 94, 264, 333, 360
Csp6I GTAC 2 cut(s) 220, 247
CviAII CATG 7 cut(s) 196, 415, 484, 566, 829, 848, 870
CviQI GTAC 2 cut(s) 220, 247
DdeI CTNAG 1 cut(s) 462
DpnI GATC 4 cut(s) 429, 564, 1017, 1035
DpnII GATC 4 cut(s) 427, 562, 1015, 1033
DraI TTTAAA 1 cut(s) 783
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 4 cut(s) 94, 264, 333, 360
Eco57I CTGAAG 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 3 cut(s) 175, 280, 586
EcoRV GATATC 1 cut(s) 319
FaeI CATG 7 cut(s) 199, 418, 487, 569, 832, 851, 873
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 516, 548
FaqI GGGAC 1 cut(s) 802
FatI CATG 7 cut(s) 195, 414, 483, 565, 828, 847, 869
Fnu4HI GCNGC 4 cut(s) 189, 538, 570, 573
FokI GGATG 3 cut(s) 131, 187, 604
Fsp4HI GCNGC 4 cut(s) 189, 538, 570, 573
FspBI CTAG 1 cut(s) 1046
GluI GCNGC 4 cut(s) 189, 538, 570, 573
GsuI CTGGAG 1 cut(s) 570
HapII CCGG 4 cut(s) 11, 78, 376, 621
Hin1II CATG 7 cut(s) 199, 418, 487, 569, 832, 851, 873
HinfI GANTC 4 cut(s) 66, 583, 833, 860
HpaII CCGG 4 cut(s) 11, 78, 376, 621
HphI GGTGA 5 cut(s) 533, 681, 760, 764, 855
Hpy166II GTNNAC 3 cut(s) 94, 755, 845
Hpy188I TCNGA 5 cut(s) 65, 205, 499, 778, 973
Hpy188III TCNNGA 3 cut(s) 112, 464, 621
Hpy8I GTNNAC 3 cut(s) 94, 755, 845
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 743
HpyCH4III ACNGT 4 cut(s) 599, 772, 816, 1062
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 5 cut(s) 165, 418, 572, 649, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 7 cut(s) 199, 418, 487, 569, 832, 851, 873
Kpn2I TCCGGA 1 cut(s) 620
Kzo9I GATC 4 cut(s) 427, 562, 1015, 1033
LmnI GCTCC 2 cut(s) 310, 799
Lsp1109I GCAGC 4 cut(s) 175, 549, 556, 584
MaeI CTAG 1 cut(s) 1046
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 2 cut(s) 580, 861
MalI GATC 4 cut(s) 429, 564, 1017, 1035
MboI GATC 4 cut(s) 427, 562, 1015, 1033
MboII GAAGA 8 cut(s) 27, 217, 367, 499, 572, 650, 1004, 1007
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 5 cut(s) 238, 706, 917, 937, 1004
MlyI GAGTC 2 cut(s) 577, 869
MmeI TCCRAC 2 cut(s) 228, 291
MroI TCCGGA 1 cut(s) 620
MroXI GAANNNNTTC 1 cut(s) 642
MseI TTAA 3 cut(s) 720, 782, 921
MslI CAYNNNNRTG 1 cut(s) 868
MspA1I CMGCKG 2 cut(s) 540, 575
MspI CCGG 4 cut(s) 11, 78, 376, 621
MspR9I CCNGG 5 cut(s) 12, 79, 177, 282, 588
MvaI CCWGG 3 cut(s) 177, 282, 588
MwoI GCNNNNNNNGC 1 cut(s) 385
NciI CCSGG 2 cut(s) 12, 79
NdeII GATC 4 cut(s) 427, 562, 1015, 1033
NlaIII CATG 7 cut(s) 199, 418, 487, 569, 832, 851, 873
NlaIV GGNNCC 1 cut(s) 661
NmeAIII GCCGAG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 580, 861
NspI RCATGY 3 cut(s) 199, 851, 873
PaeI GCATGC 1 cut(s) 199
PasI CCCWGGG 1 cut(s) 176
PciI ACATGT 2 cut(s) 847, 869
PdmI GAANNNNTTC 1 cut(s) 642
PfeI GAWTC 2 cut(s) 66, 833
PkrI GCNGC 4 cut(s) 190, 539, 571, 574
Ple19I CGATCG 1 cut(s) 430
PleI GAGTC 2 cut(s) 577, 868
PpsI GAGTC 2 cut(s) 577, 868
PpuMI RGGWCCY 1 cut(s) 360
PscI ACATGT 2 cut(s) 847, 869
PshBI ATTAAT 1 cut(s) 720
PsiI TTATAA 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 3 cut(s) 175, 280, 586
PspGI CCWGG 3 cut(s) 175, 280, 586
PspN4I GGNNCC 1 cut(s) 661
PspPI GGNCC 4 cut(s) 94, 264, 333, 360
PspPPI RGGWCCY 1 cut(s) 360
PstI CTGCAG 1 cut(s) 574
PvuI CGATCG 1 cut(s) 430
PvuII CAGCTG 2 cut(s) 540, 575
RsaI GTAC 2 cut(s) 221, 248
RsaNI GTAC 2 cut(s) 220, 247
RseI CAYNNNNRTG 1 cut(s) 868
SaqAI TTAA 3 cut(s) 720, 782, 921
SatI GCNGC 4 cut(s) 189, 538, 570, 573
Sau3AI GATC 4 cut(s) 427, 562, 1015, 1033
Sau96I GGNCC 4 cut(s) 94, 264, 333, 360
SchI GAGTC 2 cut(s) 577, 869
ScrFI CCNGG 5 cut(s) 12, 79, 177, 282, 588
SduI GDGCHC 1 cut(s) 426
SfcI CTRYAG 3 cut(s) 541, 570, 1061
SinI GGWCC 4 cut(s) 94, 264, 333, 360
SmiMI CAYNNNNRTG 1 cut(s) 868
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SphI GCATGC 1 cut(s) 199
Sse9I AATT 5 cut(s) 238, 706, 917, 937, 1004
SsiI CCGC 2 cut(s) 262, 331
SspMI CTAG 1 cut(s) 1046
StyD4I CCNGG 5 cut(s) 10, 77, 175, 280, 586
TaaI ACNGT 4 cut(s) 599, 772, 816, 1062
TaiI ACGT 1 cut(s) 371
TaqI TCGA 3 cut(s) 156, 171, 232
TaqII GACCGA 1 cut(s) 218
TasI AATT 5 cut(s) 238, 706, 917, 937, 1004
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 2 cut(s) 66, 833
Tru1I TTAA 3 cut(s) 720, 782, 921
Tru9I TTAA 3 cut(s) 720, 782, 921
TscAI CASTG 2 cut(s) 907, 1065
TseFI GTSAC 2 cut(s) 580, 861
TseI GCWGC 4 cut(s) 188, 537, 569, 572
Tsp45I GTSAC 2 cut(s) 580, 861
TspDTI ATGAA 4 cut(s) 500, 762, 804, 927
TspRI CASTG 2 cut(s) 907, 1065
VpaK11BI GGWCC 4 cut(s) 94, 264, 333, 360
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 1 cut(s) 1004
XceI RCATGY 3 cut(s) 199, 851, 873
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 642
XspI CTAG 1 cut(s) 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.