Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000197

Physical Location & Seq

Genomic Coordinates Reverse (-)

53551333 .. 53555733

Gene Structure 4401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCAACAGCAGCAGTAGAACTTCGAGTGGGTTTCAGATTCCACCCCACAGAAGAGGAGCTGGTCAATTACTACCTCAACAACAAGATACAAGGCCACGACTTTAACGACATCATCCCTGAAATGGACATCTGCAGCTACGAGCCTTGGGATTTGCCCGGGTTTTCATTGATAAAGTCTGGTCAGGAGTGGTTCTACTTCAGTAAACCGGATTACAAGTTCAGAAATAACCGAAGCCGGGCCAACCGGGCCACCGAGAGAGGGTTTTGGAAGATTACTGGGAAAGAGCGTGAGATCAAAGCTCGAGAGTCCAAAGCTGTCGTTGGGAAGAAGAGGACTTTGACTTTCTATAAAGGGAAAGTTCGGAGAGGCCAGAAGAACAATTGGGTTATCCATGAGTATTACATACCTGAAACTTTGCTTCCTAATGCTGCTAAGCAGAGGGACTTTGTTCTCTGTCGCTTGAAGAAAAAAGATGAGAATACTGAGATTGGAGCCTGTGATGAAGGTGAACCTAGGACTAACGATCAATCTGATTTTGAAAATCTACTAGCACTTGTTCATACGGCGGGTGTTCCAGAGGAAAATACTCGACCTGAAGAAATTTTGGGTTCACTCTTTTCCTCACGGGCATCACCTGAGTTGCCTCAATCTGATGATTATTTCTCCTCCATGCTGAGAGGCAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

230

Amino Acids

26.74

Weight (kDa)

6.92

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 135	2e-39	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica	MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica	Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis	pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis	RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata	RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora	Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii	Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa	Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha	Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana	Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	603
AcuI	CTGAAG	2 cut(s)	184, 618
AfiI	CCNNNNNNNGG	3 cut(s)	124, 238, 261
AgsI	TTSAA	2 cut(s)	466, 542
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	4 cut(s)	61, 138, 302, 317
AluI	AGCT	4 cut(s)	61, 138, 302, 317
Ama87I	CYCGRG	2 cut(s)	158, 303
AoxI	GGCC	4 cut(s)	94, 240, 249, 370
ApeKI	GCWGC	3 cut(s)	11, 135, 431
ApoI	RAATTY	1 cut(s)	603
AspA2I	CCTAGG	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	240, 249
AsuC2I	CCSGG	4 cut(s)	159, 160, 239, 248
AsuHPI	GGTGA	2 cut(s)	521, 627
AvaI	CYCGRG	2 cut(s)	158, 303
AvrII	CCTAGG	1 cut(s)	515
BbvI	GCAGC	3 cut(s)	23, 147, 418
BceAI	ACGGC	1 cut(s)	582
BcnI	CCSGG	4 cut(s)	159, 160, 239, 248
BfaI	CTAG	2 cut(s)	516, 551
BfmI	CTRYAG	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	12, 136, 432
BlnI	CCTAGG	1 cut(s)	515
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	3 cut(s)	13, 137, 433
Bme1390I	CCNGG	4 cut(s)	159, 160, 239, 248
BmeT110I	CYCGRG	2 cut(s)	158, 303
BmgT120I	GGNCC	2 cut(s)	240, 249
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	4 cut(s)	159, 160, 239, 248
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	641
BmuI	ACTGGG	1 cut(s)	288
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuMI	CCSGG	4 cut(s)	159, 160, 239, 248
BsaJI	CCNNGG	3 cut(s)	146, 158, 515
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 238, 261
Bse1I	ACTGG	1 cut(s)	283
BseDI	CCNNGG	3 cut(s)	146, 158, 515
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	124, 238, 261
BseMII	CTCAG	3 cut(s)	477, 630, 668
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	71, 658
BseXI	GCAGC	3 cut(s)	23, 147, 418
BshFI	GGCC	4 cut(s)	96, 242, 251, 372
BsiHKCI	CYCGRG	2 cut(s)	158, 303
BsiSI	CCGG	4 cut(s)	159, 209, 238, 247
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	124, 238, 261
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	4 cut(s)	96, 242, 251, 372
BsoBI	CYCGRG	2 cut(s)	158, 303
Bsp143I	GATC	2 cut(s)	294, 526
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	4 cut(s)	96, 242, 251, 372
BspCNI	CTCAG	3 cut(s)	478, 631, 669
BspLI	GGNNCC	1 cut(s)	496
BspMAI	CTGCAG	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	146, 158, 515
BssMI	GATC	2 cut(s)	294, 526
BssT1I	CCWWGG	2 cut(s)	146, 515
Bst6I	CTCTTC	2 cut(s)	48, 326
BstDEI	CTNAG	4 cut(s)	435, 486, 639, 677
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	297, 529
BstMBI	GATC	2 cut(s)	294, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 248
BstSCI	CCNGG	4 cut(s)	157, 158, 237, 246
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	23, 147, 418
BsuRI	GGCC	4 cut(s)	96, 242, 251, 372
BtsCI	GGATG	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	240, 249
Cfr9I	CCCGGG	1 cut(s)	158
CviAII	CATG	2 cut(s)	395, 673
DdeI	CTNAG	4 cut(s)	435, 486, 639, 677
DpnI	GATC	2 cut(s)	296, 528
DpnII	GATC	2 cut(s)	294, 526
Eam1104I	CTCTTC	2 cut(s)	48, 326
EarI	CTCTTC	2 cut(s)	48, 326
Eco130I	CCWWGG	2 cut(s)	146, 515
Eco57I	CTGAAG	2 cut(s)	184, 618
Eco88I	CYCGRG	2 cut(s)	158, 303
EcoT14I	CCWWGG	2 cut(s)	146, 515
ErhI	CCWWGG	2 cut(s)	146, 515
FaeI	CATG	2 cut(s)	398, 676
FaiI	YATR	5 cut(s)	351, 396, 407, 564, 674
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	2 cut(s)	394, 672
FauI	CCCGC	1 cut(s)	562
Fnu4HI	GCNGC	3 cut(s)	12, 136, 432
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	12, 136, 432
FspBI	CTAG	2 cut(s)	516, 551
GluI	GCNGC	3 cut(s)	12, 136, 432
HaeIII	GGCC	4 cut(s)	96, 242, 251, 372
HapII	CCGG	4 cut(s)	159, 209, 238, 247
Hin1II	CATG	2 cut(s)	398, 676
HinfI	GANTC	2 cut(s)	39, 308
HpaII	CCGG	4 cut(s)	159, 209, 238, 247
HphI	GGTGA	2 cut(s)	521, 627
Hpy166II	GTNNAC	3 cut(s)	206, 512, 614
Hpy188I	TCNGA	5 cut(s)	38, 224, 366, 535, 655
Hpy188III	TCNNGA	3 cut(s)	185, 305, 578
Hpy8I	GTNNAC	3 cut(s)	206, 512, 614
HpyAV	CCTTC	1 cut(s)	500
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 248
HpyF3I	CTNAG	4 cut(s)	435, 486, 639, 677
Hsp92II	CATG	2 cut(s)	398, 676
Kzo9I	GATC	2 cut(s)	294, 526
LmnI	GCTCC	2 cut(s)	58, 494
Lsp1109I	GCAGC	3 cut(s)	23, 147, 418
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	2 cut(s)	516, 551
MalI	GATC	2 cut(s)	296, 528
MboI	GATC	2 cut(s)	294, 526
MboII	GAAGA	7 cut(s)	65, 283, 340, 343, 388, 478, 611
MfeI	CAATTG	1 cut(s)	382
MluCI	AATT	4 cut(s)	67, 382, 603, 685
MlyI	GAGTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	105
MspI	CCGG	4 cut(s)	159, 209, 238, 247
MspR9I	CCNGG	4 cut(s)	159, 160, 239, 248
MunI	CAATTG	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	11, 248
NciI	CCSGG	4 cut(s)	159, 160, 239, 248
NdeII	GATC	2 cut(s)	294, 526
NlaIII	CATG	2 cut(s)	398, 676
NlaIV	GGNNCC	1 cut(s)	496
PaeR7I	CTCGAG	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	13, 137, 433
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	2 cut(s)	240, 249
PstI	CTGCAG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	12, 136, 432
Sau3AI	GATC	2 cut(s)	294, 526
Sau96I	GGNCC	2 cut(s)	240, 249
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	4 cut(s)	159, 160, 239, 248
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	1 cut(s)	133
SfiI	GGCCNNNNNGGCC	1 cut(s)	248
Sfr274I	CTCGAG	1 cut(s)	303
SlaI	CTCGAG	1 cut(s)	303
SmaI	CCCGGG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	67, 382, 603, 685
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	2 cut(s)	516, 551
StyD4I	CCNGG	4 cut(s)	157, 158, 237, 246
StyI	CCWWGG	2 cut(s)	146, 515
TaqI	TCGA	3 cut(s)	25, 304, 592
TasI	AATT	4 cut(s)	67, 382, 603, 685
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseI	GCWGC	3 cut(s)	11, 135, 431
TspDTI	ATGAA	3 cut(s)	156, 519, 551
TspMI	CCCGGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	603
XhoI	CTCGAG	1 cut(s)	303
XmaI	CCCGGG	1 cut(s)	158
XmaJI	CCTAGG	1 cut(s)	515
XspI	CTAG	2 cut(s)	516, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.