MD01G1092900.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000197
Physical Location & Seq
Reverse (-)
20770920 .. 20774027
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1092900.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGGGTAGTAGCAGCAGCAGCAGCAGCAGCATCGCACCTGAAGAAGGAGATGCAGTGCGTGTGAATGTGAGCCGACTGCCTGGGTTCGGATTTTCCCCAACTGATGAGTTGCTGGTCAGCTACTATCTGAAGAACAAGATAGAGGGGACGGACTCCCATTTCCGCCACGTCTTCCCTGAAATCGATCTCAGCAAGTACGAGCCCTGCGATATTCCTGCATTCGTCCCAGAAGTTAATGAGAAGGAGTGGGTCTTCTTCACCCACCCCAAATACAAGGACACCAACAGCACTCGCCGCGACCGGCTCACGCATCAAGGCTATTACAAGATCACAGGAGATGAGCGGGAGATCAGGGCCGAAGAATCCAAAGCTGTGATTGGGAAGAAGATTATTCTGACCTTCCACGAAGGTCGTGGACCAAAAGCAAAGAAGTCCGATTGGGTAATCCATGAGTATTATTGTACAAACACTGAGGTGGGTTCTAAACCAACCAAGCAGATGGACTTTGTCCTCTGCCGCCTGAAGAACAAGTCAGCTAGTTATAAGAAGCCGAAGGTTGATCCAACCCGCGGCGAATTAGCCGATTCAGCTGCAAACCCGGAAGATGATCAAGCTGCTGCAAGTGATGTGATTGCAGGGCCAGTGGAACATCTGGGATACGAAGAGCTAGGAGATGTTAATAGCTCTGAGTCTCCAGACGGTTCTTGTCCTATAAACTGGAATGACATTTTGACCTATGTTTATGGTGATGATGATCCAGCTGCATCTGATATGTTTCAAGAGTTGTGTTCTGCGTTGGGAGAGATTCCGAATTCAACCTCTCAGCCGCCGCAGACACCACAACCACATCAGCCACCGCATCCACATCAACCACACGATTACTACCCCTCCACACATCAGCCACCTGAGTATATTATTTCAACTAATGATCCCAATGAACCAGTTAGCAAACCTAATGGTGTTCAAGATCTTGCTACAGATGAAATGATTCCAGAGGATTGTTTTCTTCCAGATGAATTTATGGGTCTGCTGTTTGATCCGTTACAAGATTACTTGCCGCTGTCACCAATGAACATGGAGCCGGGAGATGGTGTGCATCCCAATTACTGTATTGGATGCACTGATGAGTTGCGATCTCTAGATGATATGGAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

386

Amino Acids

43.0

Weight (kDa)

4.61

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 27 - 153 2.8e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AccBSI CCGCTC 1 cut(s) 343
AccII CGCG 2 cut(s) 297, 570
AclWI GGATC 4 cut(s) 554, 749, 923, 1031
AcsI RAATTY 2 cut(s) 811, 1016
AcuI CTGAAG 3 cut(s) 60, 149, 542
AfaI GTAC 2 cut(s) 197, 463
AfiI CCNNNNNNNGG 4 cut(s) 44, 86, 569, 1088
AgsI TTSAA 4 cut(s) 779, 816, 921, 965
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 79
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 8 cut(s) 120, 371, 536, 590, 614, 667, 684, 761
AluI AGCT 8 cut(s) 120, 371, 536, 590, 614, 667, 684, 761
Alw26I GTCTC 1 cut(s) 696
AlwI GGATC 4 cut(s) 554, 749, 923, 1031
AoxI GGCC 2 cut(s) 354, 638
ApoI RAATTY 2 cut(s) 811, 1016
Asp700I GAANNNNTTC 1 cut(s) 987
AspS9I GGNCC 3 cut(s) 354, 416, 638
AsuC2I CCSGG 2 cut(s) 599, 1083
AsuHPI GGTGA 3 cut(s) 250, 758, 1056
AvaII GGWCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 2 cut(s) 163, 244
BccI CCATC 2 cut(s) 493, 1082
BcgI CGANNNNNNTGC 6 cut(s) 13, 47, 197, 231, 572, 606
BciT130I CCWGG 1 cut(s) 81
BciVI GTATCC 1 cut(s) 650
BclI TGATCA 1 cut(s) 607
BcnI CCSGG 2 cut(s) 599, 1083
BcoDI GTCTC 1 cut(s) 696
BfaI CTAG 3 cut(s) 537, 668, 1139
BfmI CTRYAG 1 cut(s) 975
BfuI GTATCC 1 cut(s) 650
BglII AGATCT 1 cut(s) 967
Bme1390I CCNGG 3 cut(s) 81, 599, 1083
Bme18I GGWCC 1 cut(s) 416
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 354, 416, 638
BmiI GGNNCC 1 cut(s) 1080
BmrFI CCNGG 3 cut(s) 81, 599, 1083
BmsI GCATC 7 cut(s) 39, 40, 319, 773, 868, 1105, 1106
BpiI GAAGAC 2 cut(s) 163, 244
BpmI CTGGAG 1 cut(s) 678
BpuMI CCSGG 2 cut(s) 599, 1083
Bsa29I ATCGAT 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 753
BsaJI CCNNGG 2 cut(s) 80, 568
BsaXI ACNNNNNCTCC 6 cut(s) 39, 69, 872, 902, 1077, 1107
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 86, 569, 1088
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 3 cut(s) 641, 722, 941
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 1 cut(s) 81
BseCI ATCGAT 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 80, 568
BseGI GGATG 3 cut(s) 859, 1096, 1121
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 4 cut(s) 44, 86, 569, 1088
BseMII CTCAG 5 cut(s) 202, 462, 678, 836, 897
BseNI ACTGG 3 cut(s) 641, 722, 941
Bsh1236I CGCG 2 cut(s) 297, 570
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 2 cut(s) 356, 640
BshVI ATCGAT 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 3 cut(s) 301, 599, 1082
BslFI GGGAC 2 cut(s) 160, 209
BslI CCNNNNNNNGG 4 cut(s) 44, 86, 569, 1088
BsmAI GTCTC 1 cut(s) 696
BsmFI GGGAC 2 cut(s) 160, 209
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 2 cut(s) 356, 640
Bsp1286I GDGCHC 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 461
BspANI GGCC 2 cut(s) 356, 640
BspCNI CTCAG 5 cut(s) 201, 463, 679, 835, 898
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 2 cut(s) 297, 570
BspLI GGNNCC 1 cut(s) 1080
BspPI GGATC 4 cut(s) 554, 749, 923, 1031
BspQI GCTCTTC 1 cut(s) 657
BsrBI CCGCTC 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 461
BsrI ACTGG 3 cut(s) 641, 722, 941
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 2 cut(s) 80, 568
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 701, 1109
Bst6I CTCTTC 1 cut(s) 657
BstAUI TGTACA 1 cut(s) 461
BstDEI CTNAG 5 cut(s) 188, 471, 687, 822, 906
BstDSI CCRYGG 1 cut(s) 568
BstENI CCTNNNNNAGG 1 cut(s) 42
BstF5I GGATG 3 cut(s) 859, 1096, 1121
BstFNI CGCG 2 cut(s) 297, 570
BstMAI GTCTC 1 cut(s) 696
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 6 cut(s) 18, 21, 24, 27, 294, 587
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 3 cut(s) 79, 597, 1081
BstSFI CTRYAG 1 cut(s) 975
BstUI CGCG 2 cut(s) 297, 570
BstV2I GAAGAC 2 cut(s) 163, 244
BstX2I RGATCY 1 cut(s) 967
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 1 cut(s) 967
Bsu15I ATCGAT 1 cut(s) 183
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 2 cut(s) 356, 640
BsuTUI ATCGAT 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 568
BtgZI GCGATG 1 cut(s) 16
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 3 cut(s) 859, 1096, 1121
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 4 cut(s) 60, 468, 648, 1119
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 3 cut(s) 354, 416, 638
Cfr42I CCGCGG 1 cut(s) 571
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 2 cut(s) 196, 462
CviAII CATG 2 cut(s) 449, 1075
CviQI GTAC 2 cut(s) 196, 462
DdeI CTNAG 5 cut(s) 188, 471, 687, 822, 906
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
EciI GGCGGA 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 3 cut(s) 60, 149, 542
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 2 cut(s) 452, 1078
FaqI GGGAC 2 cut(s) 160, 209
FatI CATG 2 cut(s) 448, 1074
FauI CCCGC 2 cut(s) 336, 575
FbaI TGATCA 1 cut(s) 607
FokI GGATG 3 cut(s) 846, 1083, 1128
FriOI GRGCYC 1 cut(s) 204
FspBI CTAG 3 cut(s) 537, 668, 1139
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 2 cut(s) 356, 640
HapII CCGG 3 cut(s) 301, 599, 1082
Hin1II CATG 2 cut(s) 452, 1078
HinfI GANTC 6 cut(s) 152, 362, 584, 689, 805, 988
HpaII CCGG 3 cut(s) 301, 599, 1082
HphI GGTGA 3 cut(s) 250, 758, 1056
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 7 cut(s) 89, 129, 396, 436, 688, 769, 810
Hpy188III TCNNGA 6 cut(s) 695, 779, 965, 992, 1010, 1139
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 5 cut(s) 38, 235, 401, 409, 547
HpyCH4III ACNGT 2 cut(s) 701, 1109
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 8 cut(s) 53, 218, 593, 620, 635, 764, 1096, 1119
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 21, 24, 27, 294, 587
HpyF3I CTNAG 5 cut(s) 188, 471, 687, 822, 906
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 452, 1078
Ksp22I TGATCA 1 cut(s) 607
KspI CCGCGG 1 cut(s) 571
LguI GCTCTTC 1 cut(s) 657
LmnI GCTCC 1 cut(s) 1078
LweI GCATC 7 cut(s) 39, 40, 319, 773, 868, 1105, 1106
MaeI CTAG 3 cut(s) 537, 668, 1139
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 1041, 1062
MbiI CCGCTC 1 cut(s) 343
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 4 cut(s) 575, 811, 1016, 1102
MlyI GAGTC 2 cut(s) 146, 698
MmeI TCCRAC 1 cut(s) 587
MnlI CCTC 6 cut(s) 136, 466, 521, 829, 898, 988
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 3 cut(s) 234, 678, 1156
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 4 cut(s) 570, 590, 761, 1060
MspI CCGG 3 cut(s) 301, 599, 1082
MspR9I CCNGG 3 cut(s) 81, 599, 1083
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 2 cut(s) 297, 570
MwoI GCNNNNNNNGC 6 cut(s) 18, 21, 24, 27, 294, 587
NciI CCSGG 2 cut(s) 599, 1083
NlaIII CATG 2 cut(s) 452, 1078
NlaIV GGNNCC 1 cut(s) 1080
NmuCI GTSAC 1 cut(s) 1062
OliI CACNNNNGTG 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 4 cut(s) 362, 584, 805, 988
PflFI GACNNNGTC 1 cut(s) 506
PleI GAGTC 2 cut(s) 146, 697
PpsI GAGTC 2 cut(s) 146, 697
PsiI TTATAA 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 1080
PspPI GGNCC 3 cut(s) 354, 416, 638
PsuI RGATCY 1 cut(s) 967
PsyI GACNNNGTC 1 cut(s) 506
PvuII CAGCTG 2 cut(s) 590, 761
RsaI GTAC 2 cut(s) 197, 463
RsaNI GTAC 2 cut(s) 196, 462
RseI CAYNNNNRTG 1 cut(s) 473
SacII CCGCGG 1 cut(s) 571
SapI GCTCTTC 1 cut(s) 657
SaqAI TTAA 3 cut(s) 234, 678, 1156
Sau96I GGNCC 3 cut(s) 354, 416, 638
SchI GAGTC 2 cut(s) 146, 698
ScrFI CCNGG 3 cut(s) 81, 599, 1083
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 7 cut(s) 39, 40, 319, 773, 868, 1105, 1106
SfcI CTRYAG 1 cut(s) 975
Sfr303I CCGCGG 1 cut(s) 571
SgrBI CCGCGG 1 cut(s) 571
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 4 cut(s) 575, 811, 1016, 1102
SspMI CTAG 3 cut(s) 537, 668, 1139
StyD4I CCNGG 3 cut(s) 79, 597, 1081
TaaI ACNGT 2 cut(s) 701, 1109
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 183
TasI AATT 4 cut(s) 575, 811, 1016, 1102
TatI WGTACW 1 cut(s) 461
TauI GCSGC 6 cut(s) 297, 519, 573, 829, 832, 1060
TfiI GAWTC 4 cut(s) 362, 584, 805, 988
Tru1I TTAA 3 cut(s) 234, 678, 1156
Tru9I TTAA 3 cut(s) 234, 678, 1156
TscAI CASTG 4 cut(s) 60, 475, 648, 1126
TseFI GTSAC 1 cut(s) 1062
Tsp45I GTSAC 1 cut(s) 1062
TspDTI ATGAA 4 cut(s) 951, 996, 1029, 1085
TspGWI ACGGA 2 cut(s) 164, 1029
TspRI CASTG 4 cut(s) 60, 475, 648, 1126
Tth111I GACNNNGTC 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 416
XagI CCTNNNNNAGG 1 cut(s) 42
XapI RAATTY 2 cut(s) 811, 1016
XbaI TCTAGA 1 cut(s) 1138
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 3 cut(s) 537, 668, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.