pycom01g11680
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000197
Physical Location & Seq
Reverse (-)
12731546 .. 12732734
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11680.2

Sequence Viewer

Length: 615 bp
ATGAATAGCGGTAGCATCACAACTGAAGAAGGAAATGCGGTGCATGCGAATGTGATCCTACTACCTTCGGTCAGATTCAACCCCACTGACGAGTTGCTGGTCAGCAACTACTTGAGGAGCAAGATACAGGGCACCGACTCCCTCTTCCGCCACACCATCCCGGAAATCGATGTCTGCAAGTACGAGCCCTGCGATCTTCCTGCATTCTTCCCAGAAGTTCATGGGAAGGAGTGGTTCTTCTTTAGCCGGCCCGACTACAAGTACAACAACAGCCCTCGCTGCAAACGGGTCACGGATCACTTAGGCTTTTACAAGATCACAGGGAAGGTGCGTGAGATCAGGGCTGAAGAATCCAAAGCTGTGATTGGGAAGAAGAGGATTCTGGCCTTTTACGAAGGTCGTGGATCGAAAGCAAAGAAGACCGATTGGGTAGTCCATGAGTATTCTCTCACAGAAACTGAGGTGAGTTCTAAACCCACCAAGCAGATGGACTTTGTCCTCTGGCGCCTGAAGAACATGTCAGCTAGTTATAAGAAGCCGAAGGGTGATCCAATCCGCGGCGAATTAGCTGATTCAGGTGCTAACTCGGAAGATCGATCGAGCTGCTGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

205

Amino Acids

23.28

Weight (kDa)

8.99

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AccB1I GGYRCC 2 cut(s) 131, 504
AccII CGCG 1 cut(s) 558
AciI CCGC 5 cut(s) 9, 38, 148, 556, 558
AclWI GGATC 4 cut(s) 49, 303, 412, 542
AcuI CTGAAG 3 cut(s) 45, 366, 530
AcyI GRCGYC 1 cut(s) 505
AfaI GTAC 2 cut(s) 182, 263
AfiI CCNNNNNNNGG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 4 cut(s) 359, 524, 569, 603
AluI AGCT 4 cut(s) 359, 524, 569, 603
AlwI GGATC 4 cut(s) 49, 303, 412, 542
AlwNI CAGNNNCTG 1 cut(s) 458
AoxI GGCC 2 cut(s) 248, 384
ApeKI GCWGC 2 cut(s) 279, 603
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 475, 557
BaeGI GKGCMC 1 cut(s) 134
BanI GGYRCC 2 cut(s) 131, 504
BanII GRGCYC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 425
BbvI GCAGC 2 cut(s) 266, 590
BccI CCATC 2 cut(s) 164, 481
BcgI CGANNNNNNTGC 3 cut(s) 182, 216, 585
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 508
BisI GCNGC 3 cut(s) 280, 559, 604
BlsI GCNGC 3 cut(s) 281, 560, 605
Bme1390I CCNGG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 133, 506
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 161
Bsa29I ATCGAT 2 cut(s) 168, 595
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 556
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse118I RCCGGY 1 cut(s) 246
BseCI ATCGAT 2 cut(s) 168, 595
BseDI CCNNGG 1 cut(s) 556
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 2 cut(s) 266, 590
Bsh1236I CGCG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 599
BshFI GGCC 2 cut(s) 250, 386
BshNI GGYRCC 2 cut(s) 131, 504
BshVI ATCGAT 2 cut(s) 168, 595
BsiEI CGRYCG 1 cut(s) 599
BsiSI CCGG 2 cut(s) 161, 247
BslI CCNNNNNNNGG 1 cut(s) 557
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 2 cut(s) 250, 386
Bsp1286I GDGCHC 2 cut(s) 134, 189
Bsp143I GATC 9 cut(s) 54, 193, 295, 315, 336, 404, 547, 592, 596
BspACI CCGC 5 cut(s) 9, 38, 148, 556, 558
BspANI GGCC 2 cut(s) 250, 386
BspCNI CTCAG 1 cut(s) 451
BspDI ATCGAT 2 cut(s) 168, 595
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 133, 506
BspPI GGATC 4 cut(s) 49, 303, 412, 542
BspT107I GGYRCC 2 cut(s) 131, 504
BsrFI RCCGGY 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 556
BssMI GATC 9 cut(s) 54, 193, 295, 315, 336, 404, 547, 592, 596
BssNI GRCGYC 1 cut(s) 505
Bst6I CTCTTC 2 cut(s) 149, 368
BstACI GRCGYC 1 cut(s) 505
BstC8I GCNNGC 2 cut(s) 45, 248
BstDEI CTNAG 2 cut(s) 301, 459
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 558
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 9 cut(s) 57, 196, 298, 318, 339, 407, 550, 595, 599
BstMBI GATC 9 cut(s) 54, 193, 295, 315, 336, 404, 547, 592, 596
BstMCI CGRYCG 1 cut(s) 599
BstMWI GCNNNNNNNGC 2 cut(s) 44, 279
BstNSI RCATGY 2 cut(s) 47, 520
BstSCI CCNGG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 134
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 2 cut(s) 266, 590
BstV2I GAAGAC 1 cut(s) 425
BstXI CCANNNNNNTGG 1 cut(s) 487
Bsu15I ATCGAT 2 cut(s) 168, 595
BsuRI GGCC 2 cut(s) 250, 386
BsuTUI ATCGAT 2 cut(s) 168, 595
BtgI CCRYGG 1 cut(s) 556
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 45, 248
CaiI CAGNNNCTG 1 cut(s) 458
CfoI GCGC 1 cut(s) 507
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 249
Cfr42I CCGCGG 1 cut(s) 559
ClaI ATCGAT 2 cut(s) 168, 595
Csp6I GTAC 2 cut(s) 181, 262
CviAII CATG 4 cut(s) 44, 221, 437, 517
CviQI GTAC 2 cut(s) 181, 262
DdeI CTNAG 2 cut(s) 301, 459
DinI GGCGCC 1 cut(s) 506
DpnI GATC 9 cut(s) 56, 195, 297, 317, 338, 406, 549, 594, 598
DpnII GATC 9 cut(s) 54, 193, 295, 315, 336, 404, 547, 592, 596
Eam1104I CTCTTC 2 cut(s) 149, 368
EarI CTCTTC 2 cut(s) 149, 368
EciI GGCGGA 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 189
Eco57I CTGAAG 3 cut(s) 45, 366, 530
EcoT38I GRGCYC 1 cut(s) 189
EgeI GGCGCC 1 cut(s) 506
EheI GGCGCC 1 cut(s) 506
FaeI CATG 4 cut(s) 47, 224, 440, 520
FaiI YATR 5 cut(s) 45, 222, 438, 518, 531
FatI CATG 4 cut(s) 43, 220, 436, 516
Fnu4HI GCNGC 3 cut(s) 280, 559, 604
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 280, 559, 604
FspBI CTAG 1 cut(s) 525
GlaI GCGC 1 cut(s) 506
GluI GCNGC 3 cut(s) 280, 559, 604
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 2 cut(s) 250, 386
HapII CCGG 2 cut(s) 161, 247
HhaI GCGC 1 cut(s) 507
Hin1I GRCGYC 1 cut(s) 505
Hin1II CATG 4 cut(s) 47, 224, 440, 520
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HinfI GANTC 5 cut(s) 75, 137, 350, 379, 572
HpaII CCGG 2 cut(s) 161, 247
HphI GGTGA 2 cut(s) 475, 557
Hpy188I TCNGA 2 cut(s) 74, 589
HpyAV CCTTC 6 cut(s) 23, 75, 220, 319, 389, 535
HpyCH4V TGCA 4 cut(s) 43, 177, 203, 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 279
HpyF3I CTNAG 2 cut(s) 301, 459
Hsp92I GRCGYC 1 cut(s) 505
Hsp92II CATG 4 cut(s) 47, 224, 440, 520
HspAI GCGC 1 cut(s) 505
KasI GGCGCC 1 cut(s) 504
KroI GCCGGC 1 cut(s) 246
KroNI GCCGGC 1 cut(s) 248
KspI CCGCGG 1 cut(s) 559
Kzo9I GATC 9 cut(s) 54, 193, 295, 315, 336, 404, 547, 592, 596
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 2 cut(s) 266, 590
LweI GCATC 1 cut(s) 24
MaeI CTAG 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 289
MalI GATC 9 cut(s) 56, 195, 297, 317, 338, 406, 549, 594, 598
MboI GATC 9 cut(s) 54, 193, 295, 315, 336, 404, 547, 592, 596
MhlI GDGCHC 2 cut(s) 134, 189
MluCI AATT 1 cut(s) 563
Mly113I GGCGCC 1 cut(s) 505
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 6 cut(s) 108, 152, 285, 369, 454, 509
MroNI GCCGGC 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 558
MspI CCGG 2 cut(s) 161, 247
MspR9I CCNGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 203
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 44, 279
NaeI GCCGGC 1 cut(s) 248
NarI GGCGCC 1 cut(s) 505
NciI CCSGG 1 cut(s) 161
NdeII GATC 9 cut(s) 54, 193, 295, 315, 336, 404, 547, 592, 596
NgoMIV GCCGGC 1 cut(s) 246
NlaIII CATG 4 cut(s) 47, 224, 440, 520
NlaIV GGNNCC 2 cut(s) 133, 506
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 2 cut(s) 47, 520
PaeI GCATGC 1 cut(s) 47
PciI ACATGT 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 248
PfeI GAWTC 4 cut(s) 75, 350, 379, 572
PflFI GACNNNGTC 1 cut(s) 494
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 3 cut(s) 281, 560, 605
Ple19I CGATCG 1 cut(s) 599
PleI GAGTC 1 cut(s) 131
PluTI GGCGCC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 131
PscI ACATGT 1 cut(s) 516
PsiI TTATAA 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 133, 506
PspPI GGNCC 1 cut(s) 249
PstNI CAGNNNCTG 1 cut(s) 458
PsyI GACNNNGTC 1 cut(s) 494
PvuI CGATCG 1 cut(s) 599
RsaI GTAC 2 cut(s) 182, 263
RsaNI GTAC 2 cut(s) 181, 262
RseI CAYNNNNRTG 1 cut(s) 48
SacII CCGCGG 1 cut(s) 559
SatI GCNGC 3 cut(s) 280, 559, 604
Sau3AI GATC 9 cut(s) 54, 193, 295, 315, 336, 404, 547, 592, 596
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 2 cut(s) 134, 189
SetI ASST 9 cut(s) 67, 330, 361, 400, 465, 526, 571, 580, 605
SfaNI GCATC 1 cut(s) 24
SfoI GGCGCC 1 cut(s) 506
Sfr303I CCGCGG 1 cut(s) 559
SgrBI CCGCGG 1 cut(s) 559
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SphI GCATGC 1 cut(s) 47
Sse9I AATT 1 cut(s) 563
SsiI CCGC 5 cut(s) 9, 38, 148, 556, 558
SspDI GGCGCC 1 cut(s) 504
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 159
TaqI TCGA 4 cut(s) 168, 407, 595, 599
TaqII GACCGA 2 cut(s) 58, 437
TasI AATT 1 cut(s) 563
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 561
TfiI GAWTC 4 cut(s) 75, 350, 379, 572
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 279, 603
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 17, 209
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 494
XceI RCATGY 2 cut(s) 47, 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.