Rmu_sc0006101.1_g000005
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006101.1
OG0000197
Physical Location & Seq
Reverse (-)
32162 .. 34839
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006101.1_g000005.1.cds

Sequence Viewer

Length: 714 bp
ctggcagctaggttggggactgatacagaggctcaggacatggagcggttcttcttcaccagaaagtattacgagtacaacaaaagctctcgctcgaattggagcacgaagaagggatactggaaaatcacaggcaaagagcgtgggaacaagaggacattgactttttaccaggatcgtgtgccgaaaccgaacgagaccagctgggtcattcatgagtactatcttcctggaaatggagttatttcgtatctgaagcaggcccagggcgactttgttatctgtcacttgatgattaaatcagataagaaggattcttcgcgcagtaacgaaggagaacccggtaacgcaggtgtgtcgaattgtgaaaatcaagctgctgatgaaatggatcaagagggaagagaggagttgctattccatcaacctcagcctcagggtgaccgctgcttttcagcactgtggtcacgggcatcccacgagctggaagctgttttgcaaaccaatagcactaatgatgattgtaatgagttggaatcaccatttggagatggtgattcttgttttctagacgggaatgaagtttcaacttgtgatgaatatgagattgtgtatgatgtgtctccacagcgtcccccagtgaacttttggctgaaagtgagaccggcgaatgcatatggttcaaatgccatccggaagtctaccctcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

237

Amino Acids

27.06

Weight (kDa)

5.15

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 341
AccB7I CCANNNNNTGG 1 cut(s) 484
AccBSI CCGCTC 1 cut(s) 46
AccI GTMKAC 1 cut(s) 701
AccII CGCG 1 cut(s) 322
AccIII TCCGGA 1 cut(s) 693
AciI CCGC 2 cut(s) 46, 445
AclWI GGATC 2 cut(s) 183, 399
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 2 cut(s) 77, 221
AfiI CCNNNNNNNGG 2 cut(s) 236, 484
AgsI TTSAA 2 cut(s) 588, 684
AjnI CCWGG 3 cut(s) 171, 229, 264
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AluBI AGCT 6 cut(s) 8, 87, 204, 377, 484, 491
AluI AGCT 6 cut(s) 8, 87, 204, 377, 484, 491
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 3 cut(s) 191, 627, 655
AlwI GGATC 2 cut(s) 183, 399
Aor13HI TCCGGA 1 cut(s) 693
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 3 cut(s) 5, 377, 447
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 4 cut(s) 49, 452, 531, 566
AxyI CCTNAGG 1 cut(s) 435
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BauI CACGAG 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 3 cut(s) 17, 364, 434
BccI CCATC 3 cut(s) 429, 545, 698
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BciT130I CCWGG 3 cut(s) 173, 231, 266
BciVI GTATCC 1 cut(s) 110
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 3 cut(s) 191, 627, 655
BfaI CTAG 2 cut(s) 9, 569
BfuAI ACCTGC 1 cut(s) 341
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 3 cut(s) 6, 378, 448
BlsI GCNGC 3 cut(s) 7, 379, 449
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 4 cut(s) 173, 231, 266, 342
BmgT120I GGNCC 1 cut(s) 262
BmrFI CCNGG 4 cut(s) 173, 231, 266, 342
BmrI ACTGGG 1 cut(s) 632
BmsI GCATC 1 cut(s) 482
BmuI ACTGGG 1 cut(s) 632
Bpu10I CCTNAGC 2 cut(s) 33, 429
BpuMI CCSGG 1 cut(s) 342
BsaI GGTCTC 2 cut(s) 191, 655
BsaJI CCNNGG 2 cut(s) 264, 265
BsaWI WCCGGW 1 cut(s) 693
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 484
Bse118I RCCGGY 1 cut(s) 664
Bse1I ACTGG 2 cut(s) 125, 638
Bse21I CCTNAGG 1 cut(s) 435
BseAI TCCGGA 1 cut(s) 693
BseBI CCWGG 3 cut(s) 173, 231, 266
BseDI CCNNGG 2 cut(s) 264, 265
BseGI GGATG 2 cut(s) 473, 690
BseLI CCNNNNNNNGG 2 cut(s) 236, 484
BseMII CTCAG 3 cut(s) 47, 443, 449
BseNI ACTGG 2 cut(s) 125, 638
BseRI GAGGAG 2 cut(s) 422, 698
BseXI GCAGC 3 cut(s) 17, 364, 434
BseYI CCCAGC 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 3 cut(s) 342, 665, 694
BslFI GGGAC 2 cut(s) 31, 618
BslI CCNNNNNNNGG 2 cut(s) 236, 484
BsmAI GTCTC 3 cut(s) 191, 627, 655
BsmFI GGGAC 2 cut(s) 31, 618
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 1 cut(s) 263
Bso31I GGTCTC 2 cut(s) 191, 655
Bsp1286I GDGCHC 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 693
Bsp143I GATC 2 cut(s) 175, 391
BspACI CCGC 2 cut(s) 46, 445
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 3 cut(s) 46, 442, 448
BspEI TCCGGA 1 cut(s) 693
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 2 cut(s) 183, 399
BspTNI GGTCTC 2 cut(s) 191, 655
BsrBI CCGCTC 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 664
BsrI ACTGG 2 cut(s) 125, 638
BssAI RCCGGY 1 cut(s) 664
BssECI CCNNGG 2 cut(s) 264, 265
BssMI GATC 2 cut(s) 175, 391
BssSI CACGAG 1 cut(s) 479
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 3 cut(s) 173, 231, 266
Bst4CI ACNGT 1 cut(s) 462
Bst6I CTCTTC 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 33, 429, 435
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 2 cut(s) 473, 690
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 2 cut(s) 178, 394
BstMAI GTCTC 3 cut(s) 191, 627, 655
BstMBI GATC 2 cut(s) 175, 391
BstNI CCWGG 3 cut(s) 173, 231, 266
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 4 cut(s) 171, 229, 264, 340
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 17, 364, 434
Bsu36I CCTNAGG 1 cut(s) 435
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 2 cut(s) 473, 690
BtsIMutI CAGTG 2 cut(s) 458, 645
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 1 cut(s) 261
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 664
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 1 cut(s) 620
Csp6I GTAC 2 cut(s) 76, 220
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 2 cut(s) 40, 215
CviQI GTAC 2 cut(s) 76, 220
DdeI CTNAG 3 cut(s) 33, 429, 435
DpnI GATC 2 cut(s) 177, 393
DpnII GATC 2 cut(s) 175, 391
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
Eco31I GGTCTC 2 cut(s) 191, 655
Eco57I CTGAAG 1 cut(s) 275
Eco81I CCTNAGG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoRII CCWGG 3 cut(s) 171, 229, 264
EcoT22I ATGCAT 1 cut(s) 676
FaeI CATG 2 cut(s) 43, 218
FaiI YATR 6 cut(s) 41, 216, 603, 615, 676, 678
FaqI GGGAC 2 cut(s) 31, 618
FatI CATG 2 cut(s) 39, 214
FauNDI CATATG 1 cut(s) 676
FblI GTMKAC 1 cut(s) 701
Fnu4HI GCNGC 3 cut(s) 6, 378, 448
FokI GGATG 2 cut(s) 460, 677
Fsp4HI GCNGC 3 cut(s) 6, 378, 448
FspBI CTAG 2 cut(s) 9, 569
GlaI GCGC 1 cut(s) 323
GluI GCNGC 3 cut(s) 6, 378, 448
GsaI CCCAGC 1 cut(s) 208
HaeIII GGCC 1 cut(s) 263
HapII CCGG 3 cut(s) 342, 665, 694
HgaI GACGC 1 cut(s) 620
HhaI GCGC 1 cut(s) 324
Hin1II CATG 2 cut(s) 43, 218
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 3 cut(s) 314, 536, 557
HpaII CCGG 3 cut(s) 342, 665, 694
HphI GGTGA 4 cut(s) 49, 452, 531, 566
Hpy166II GTNNAC 2 cut(s) 643, 702
Hpy188I TCNGA 3 cut(s) 255, 304, 713
Hpy188III TCNNGA 5 cut(s) 35, 215, 395, 569, 694
Hpy8I GTNNAC 2 cut(s) 643, 702
HpyAV CCTTC 3 cut(s) 106, 304, 326
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4V TGCA 2 cut(s) 499, 674
HpyF3I CTNAG 3 cut(s) 33, 429, 435
Hsp92II CATG 2 cut(s) 43, 218
HspAI GCGC 1 cut(s) 322
Kpn2I TCCGGA 1 cut(s) 693
Kzo9I GATC 2 cut(s) 175, 391
LmnI GCTCC 2 cut(s) 43, 102
Lsp1109I GCAGC 3 cut(s) 17, 364, 434
LweI GCATC 1 cut(s) 482
MaeI CTAG 2 cut(s) 9, 569
MaeIII GTNAC 5 cut(s) 284, 326, 344, 440, 465
MalI GATC 2 cut(s) 177, 393
MbiI CCGCTC 1 cut(s) 46
MboI GATC 2 cut(s) 175, 391
MboII GAAGA 6 cut(s) 43, 46, 121, 218, 309, 414
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 2 cut(s) 97, 361
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 6 cut(s) 22, 147, 391, 400, 438, 444
Mph1103I ATGCAT 1 cut(s) 676
MroI TCCGGA 1 cut(s) 693
MseI TTAA 1 cut(s) 297
MspA1I CMGCKG 2 cut(s) 204, 447
MspI CCGG 3 cut(s) 342, 665, 694
MspR9I CCNGG 4 cut(s) 173, 231, 266, 342
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 3 cut(s) 173, 231, 266
MvnI CGCG 1 cut(s) 322
NciI CCSGG 1 cut(s) 342
NdeI CATATG 1 cut(s) 676
NdeII GATC 2 cut(s) 175, 391
NlaIII CATG 2 cut(s) 43, 218
NmuCI GTSAC 3 cut(s) 284, 440, 465
NsiI ATGCAT 1 cut(s) 676
PagI TCATGA 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 341
PasI CCCWGGG 1 cut(s) 265
PctI GAATGC 1 cut(s) 676
PfeI GAWTC 3 cut(s) 314, 536, 557
PflMI CCANNNNNTGG 1 cut(s) 484
PfoI TCCNGGA 1 cut(s) 229
PkrI GCNGC 3 cut(s) 7, 379, 449
Psp6I CCWGG 3 cut(s) 171, 229, 264
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 3 cut(s) 171, 229, 264
PspPI GGNCC 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 204
RsaI GTAC 2 cut(s) 77, 221
RsaNI GTAC 2 cut(s) 76, 220
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 3 cut(s) 6, 378, 448
Sau3AI GATC 2 cut(s) 175, 391
Sau96I GGNCC 1 cut(s) 262
ScaI AGTACT 1 cut(s) 221
ScrFI CCNGG 4 cut(s) 173, 231, 266, 342
SduI GDGCHC 1 cut(s) 107
SetI ASST 9 cut(s) 10, 14, 89, 206, 355, 379, 430, 486, 493
SfaNI GCATC 1 cut(s) 482
Sse9I AATT 2 cut(s) 97, 361
SsiI CCGC 2 cut(s) 46, 445
SspMI CTAG 2 cut(s) 9, 569
StyD4I CCNGG 4 cut(s) 171, 229, 264, 340
TaaI ACNGT 1 cut(s) 462
TaqI TCGA 2 cut(s) 95, 359
TasI AATT 2 cut(s) 97, 361
TatI WGTACW 2 cut(s) 75, 219
TfiI GAWTC 3 cut(s) 314, 536, 557
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 465, 645
TseFI GTSAC 3 cut(s) 284, 440, 465
TseI GCWGC 3 cut(s) 5, 377, 447
Tsp45I GTSAC 3 cut(s) 284, 440, 465
TspDTI ATGAA 4 cut(s) 203, 399, 594, 612
TspRI CASTG 2 cut(s) 465, 645
Van91I CCANNNNNTGG 1 cut(s) 484
XbaI TCTAGA 1 cut(s) 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XmiI GTMKAC 1 cut(s) 701
XspI CTAG 2 cut(s) 9, 569
ZrmI AGTACT 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.