Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000197

Physical Location & Seq

Genomic Coordinates Reverse (-)

52004381 .. 52004982

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG294000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGTTCAACTGTTGCTTCAACCCCATCTGTACGAGATAAAAATGATATGCTTCTTAAGTTCTTGCAGAAGAATGTCTCCCCTGTCAACGTTGCAGCTAACTTACCTCGGAATATTGGTCGTGTTCAGTCAGTGAGTTTGGAGGAATCCAAGAATGAAGCAATATATGTGCTGCAGGCTGGCTCTTTCAGTGATATGCAGGAAGCCAAGTACACAAGCAATTTGTTCGAGATGCCTAAGCCTATGGAGCCTCCAACGCCTAAGCCTAAGCCTGTGGAGCCTCCAAGGCCTAAGCCTGTGGCGCCTCCAAGCAATGATGAAGAAAAGGGTATGAAGCAGAAACAAACTGGAACAACCATCAGCGATTGGAAGAGTTCATTCATTGTCTGGAAGGAATCCCCATTAAGCCTAGGATCACATCCTCCAGTAGTATACACTTGGAACATAATAGGAGGCTTGATTTTGTTCATATTTTTTGTTGGGGAACTAATTTCCTATGGGAAGTGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

170

Amino Acids

18.96

Weight (kDa)

9.05

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica	MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica	Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis	pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis	RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata	RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora	Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii	Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa	Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha	Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana	Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	432
AclI	AACGTT	1 cut(s)	90
AclWI	GGATC	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	3 cut(s)	33, 212, 509
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	9, 21
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	421
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	95, 172
AspA2I	CCTAGG	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	304
AvrII	CCTAGG	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	107, 159
BccI	CCATC	2 cut(s)	34, 365
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	410, 511
BfmI	CTRYAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	305
BfrI	CTTAAG	1 cut(s)	56
BglI	GCCNNNNNGGC	1 cut(s)	286
BisI	GCNGC	2 cut(s)	96, 173
BlnI	CCTAGG	1 cut(s)	409
BlsI	GCNGC	2 cut(s)	97, 174
BmiI	GGNNCC	3 cut(s)	249, 279, 303
BmsI	GCATC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	4 cut(s)	237, 261, 267, 291
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	107, 284, 409
Bse1I	ACTGG	2 cut(s)	352, 425
Bse3DI	GCAATG	1 cut(s)	319
BseDI	CCNNGG	3 cut(s)	107, 284, 409
BseGI	GGATG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	352, 425
BseXI	GCAGC	2 cut(s)	107, 159
BshFI	GGCC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	249, 279, 303
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	421
BspT107I	GGYRCC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	352, 425
BssECI	CCNNGG	3 cut(s)	107, 284, 409
BssMI	GATC	1 cut(s)	413
BssNAI	GTATAC	1 cut(s)	433
BssNI	GRCGYC	1 cut(s)	302
BssT1I	CCWWGG	2 cut(s)	284, 409
Bst1107I	GTATAC	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	302
BstAFI	CTTAAG	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	177, 181
BstDEI	CTNAG	4 cut(s)	237, 261, 267, 291
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	1 cut(s)	416
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	413
BstMWI	GCNNNNNNNGC	5 cut(s)	247, 256, 277, 286, 301
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	107, 159
BstZ17I	GTATAC	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	138, 196
Cac8I	GCNNGC	2 cut(s)	177, 181
CfoI	GCGC	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	32, 211, 508
CviQI	GTAC	3 cut(s)	32, 211, 508
DdeI	CTNAG	4 cut(s)	237, 261, 267, 291
DinI	GGCGCC	1 cut(s)	303
DpnI	GATC	1 cut(s)	415
DpnII	GATC	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	284, 409
Eco147I	AGGCCT	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	284, 409
EgeI	GGCGCC	1 cut(s)	303
EheI	GGCGCC	1 cut(s)	303
ErhI	CCWWGG	2 cut(s)	284, 409
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	96, 173
FokI	GGATG	1 cut(s)	405
Fsp4HI	GCNGC	2 cut(s)	96, 173
FspBI	CTAG	2 cut(s)	410, 511
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	2 cut(s)	96, 173
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	289
HhaI	GCGC	1 cut(s)	304
Hin1I	GRCGYC	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	146, 395
Hpy166II	GTNNAC	3 cut(s)	88, 213, 433
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	229, 388
Hpy8I	GTNNAC	3 cut(s)	88, 213, 433
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	67, 95, 175, 199
HpyF10VI	GCNNNNNNNGC	5 cut(s)	247, 256, 277, 286, 301
HpyF3I	CTNAG	4 cut(s)	237, 261, 267, 291
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	302
HspAI	GCGC	1 cut(s)	302
KasI	GGCGCC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	413
LmnI	GCTCC	2 cut(s)	247, 277
LpnPI	CCDG	9 cut(s)	96, 161, 165, 185, 285, 309, 333, 373, 438
Lsp1109I	GCAGC	2 cut(s)	107, 159
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	2 cut(s)	410, 511
MaeII	ACGT	1 cut(s)	90
MalI	GATC	1 cut(s)	415
MboI	GATC	1 cut(s)	413
MboII	GAAGA	3 cut(s)	82, 332, 382
MluCI	AATT	2 cut(s)	220, 489
Mly113I	GGCGCC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	7 cut(s)	117, 136, 261, 291, 315, 432, 446
MseI	TTAA	2 cut(s)	57, 404
MspCI	CTTAAG	1 cut(s)	56
MwoI	GCNNNNNNNGC	5 cut(s)	247, 256, 277, 286, 301
NarI	GGCGCC	1 cut(s)	302
NdeII	GATC	1 cut(s)	413
NlaIV	GGNNCC	3 cut(s)	249, 279, 303
PceI	AGGCCT	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	146, 395
PkrI	GCNGC	2 cut(s)	97, 174
PluTI	GGCGCC	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	249, 279, 303
PstI	CTGCAG	1 cut(s)	177
RsaI	GTAC	3 cut(s)	33, 212, 509
RsaNI	GTAC	3 cut(s)	32, 211, 508
SaqAI	TTAA	2 cut(s)	57, 404
SatI	GCNGC	2 cut(s)	96, 173
Sau3AI	GATC	1 cut(s)	413
SetI	ASST	3 cut(s)	93, 100, 109
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	173
SfoI	GGCGCC	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	220, 489
SseBI	AGGCCT	1 cut(s)	289
SspDI	GGCGCC	1 cut(s)	301
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	410, 511
StuI	AGGCCT	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	284, 409
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	228
TasI	AATT	2 cut(s)	220, 489
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	146, 395
Tru1I	TTAA	2 cut(s)	57, 404
Tru9I	TTAA	2 cut(s)	57, 404
TscAI	CASTG	2 cut(s)	138, 196
TseI	GCWGC	2 cut(s)	95, 172
TspDTI	ATGAA	6 cut(s)	171, 333, 347, 366, 370, 457
TspRI	CASTG	2 cut(s)	138, 196
Vha464I	CTTAAG	1 cut(s)	56
XmaJI	CCTAGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	410, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.