Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000197

Physical Location & Seq

Genomic Coordinates Reverse (-)

22633627 .. 22639175

Gene Structure 5549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG200600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCCTCGATACAAAGATGAGCCTCCTGTTGTTCGTGTTTACACAGTTTGTGGCGAATCAAGCAGGGTTTATGATTGTCGAGCTCTTACTTACAGGCAAGACGTAAAGACAAGAGATATTGAAGAGTATAAAAAGCGCAAGCTTCCAACGCACCAGGTTCATTGGCAGCTACACCAAGGACTGGAAACTCAAGTTACAAAGTTTTCGCCGATAAGGTTGGATGATGAGGAGTGGTTGTACTTCAGTAGACCAGATTACAAGTTTGGCAAAAAACAGGGCCAGGCCAACTGGGCCATCGAGCAAGGGATTTGGAAGATTACTGCGAAAGAGTGTGATATCAGAGCTCGGGGGTCCAAGGCCGTGATAGGGAGGAAGAGGCTTTTGACTTTCTATATTGGGAAAGTTCGGAGTGGGCAGAAGACCAATTTGGGGATTCATGAGTATTACATACCTAAAATTCTGCTAATTCCTTATGCTATTATAGGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

163

Amino Acids

19.28

Weight (kDa)

9.73

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	42 - 149	1.2e-10	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica	MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica	Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis	pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis	RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata	RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora	Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii	Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa	Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha	Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana	Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	477
Acc36I	ACCTGC	1 cut(s)	477
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	226
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	3 cut(s)	181, 366, 429
AgsI	TTSAA	1 cut(s)	122
AjnI	CCWGG	2 cut(s)	153, 279
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	4 cut(s)	83, 142, 169, 344
AluI	AGCT	4 cut(s)	83, 142, 169, 344
Alw21I	GWGCWC	2 cut(s)	85, 346
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	4 cut(s)	277, 282, 291, 357
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	3 cut(s)	277, 291, 351
AvaI	CYCGRG	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	351
BanII	GRGCYC	2 cut(s)	85, 346
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	85, 346
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	2 cut(s)	155, 281
BfuAI	ACCTGC	1 cut(s)	477
BglI	GCCNNNNNGGC	1 cut(s)	290
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	155, 281
Bme18I	GGWCC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	345
BmgT120I	GGNCC	3 cut(s)	277, 291, 351
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	155, 281
BmrI	ACTGGG	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	175, 354
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 366, 429
Bse1I	ACTGG	2 cut(s)	186, 293
BseBI	CCWGG	2 cut(s)	155, 281
BseDI	CCNNGG	2 cut(s)	175, 354
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	181, 366, 429
BseNI	ACTGG	2 cut(s)	186, 293
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	4 cut(s)	279, 284, 293, 359
BsiHKAI	GWGCWC	2 cut(s)	85, 346
BsiHKCI	CYCGRG	1 cut(s)	345
BslI	CCNNNNNNNGG	3 cut(s)	181, 366, 429
BsnI	GGCC	4 cut(s)	279, 284, 293, 359
BsoBI	CYCGRG	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	85, 346
BspANI	GGCC	4 cut(s)	279, 284, 293, 359
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	186, 293
BssECI	CCNNGG	2 cut(s)	175, 354
BssT1I	CCWWGG	2 cut(s)	175, 354
Bst2UI	CCWGG	2 cut(s)	155, 281
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	117, 368
BstC8I	GCNNGC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 148, 290
BstNI	CCWGG	2 cut(s)	155, 281
BstSCI	CCNGG	2 cut(s)	153, 279
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	425
BsuRI	GGCC	4 cut(s)	279, 284, 293, 359
BtsCI	GGATG	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	140
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	3 cut(s)	277, 291, 351
CsiI	ACCWGGT	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	437
CviQI	GTAC	1 cut(s)	238
Eam1104I	CTCTTC	2 cut(s)	117, 368
EarI	CTCTTC	2 cut(s)	117, 368
Ecl136II	GAGCTC	2 cut(s)	83, 344
Eco130I	CCWWGG	2 cut(s)	175, 354
Eco24I	GRGCYC	2 cut(s)	85, 346
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	351
Eco53kI	GAGCTC	2 cut(s)	83, 344
Eco57I	CTGAAG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	345
EcoICRI	GAGCTC	2 cut(s)	83, 344
EcoRII	CCWGG	2 cut(s)	153, 279
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	175, 354
EcoT38I	GRGCYC	2 cut(s)	85, 346
ErhI	CCWWGG	2 cut(s)	175, 354
FaeI	CATG	1 cut(s)	440
FaiI	YATR	7 cut(s)	72, 129, 393, 438, 449, 474, 482
FatI	CATG	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	2 cut(s)	85, 346
Fsp4HI	GCNGC	1 cut(s)	167
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	167
HaeIII	GGCC	4 cut(s)	279, 284, 293, 359
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	56, 433
Hpy166II	GTNNAC	2 cut(s)	40, 248
Hpy188I	TCNGA	2 cut(s)	341, 408
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	2 cut(s)	40, 248
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 148, 290
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	178
MabI	ACCWGGT	1 cut(s)	153
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	193
MboII	GAAGA	4 cut(s)	134, 325, 385, 430
MhlI	GDGCHC	2 cut(s)	85, 346
MluCI	AATT	3 cut(s)	424, 456, 465
MmeI	TCCRAC	2 cut(s)	170, 198
MnlI	CCTC	5 cut(s)	15, 33, 220, 363, 369
MspR9I	CCNGG	2 cut(s)	155, 281
MvaI	CCWGG	2 cut(s)	155, 281
MwoI	GCNNNNNNNGC	3 cut(s)	60, 148, 290
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	1 cut(s)	352
PagI	TCATGA	1 cut(s)	436
PaqCI	CACCTGC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	56, 433
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	168
Psp124BI	GAGCTC	2 cut(s)	85, 346
Psp6I	CCWGG	2 cut(s)	153, 279
PspGI	CCWGG	2 cut(s)	153, 279
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	3 cut(s)	277, 291, 351
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	2 cut(s)	85, 346
SatI	GCNGC	1 cut(s)	167
Sau96I	GGNCC	3 cut(s)	277, 291, 351
ScrFI	CCNGG	2 cut(s)	155, 281
SduI	GDGCHC	2 cut(s)	85, 346
SetI	ASST	9 cut(s)	85, 105, 144, 159, 171, 218, 346, 454, 491
SexAI	ACCWGGT	1 cut(s)	153
SfiI	GGCCNNNNNGGCC	1 cut(s)	290
SinI	GGWCC	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	424, 456, 465
SstI	GAGCTC	2 cut(s)	85, 346
StyD4I	CCNGG	2 cut(s)	153, 279
StyI	CCWWGG	2 cut(s)	175, 354
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	7, 79, 297
TasI	AATT	3 cut(s)	424, 456, 465
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	56, 433
TseI	GCWGC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	149, 425
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.