Rmu_sc0003704.1_g000007
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003704.1
OG0000197
Physical Location & Seq
Forward (+)
21022 .. 21612
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003704.1_g000007.1.cds

Sequence Viewer

Length: 474 bp
atgagcagcgagagaacgacgccgctttcattgccggtaggcttcaggttccatcccaccgaagaggagctggtgaaccattacttgaagaagaaggttcatggcggaaatgattccgaaatcaaccagatcatccgtgaaatcgacctctgcaaatacgagccggctgagcttcctgaggctcgtgacatggagtggttcttcttcaccagaagggcttataagtacaacaaaagctctcgctcgaatcggagcaccaagaagggatactggaagatcacagggaaggagcgtggaattaaagctcgacgatccaaagctgtgattgggaagaagaagacattgactttttaccagggtcgtgtgccgaaatcgaagaagaccagctgggtcattcatgagtactatcttcctggaaatggagttattaagcaggcccaggtcagtctctatttctctctcagttttctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

157

Amino Acids

18.4

Weight (kDa)

10.0

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AciI CCGC 2 cut(s) 23, 105
AclWI GGATC 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 2 cut(s) 227, 404
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 3 cut(s) 354, 412, 438
AluBI AGCT 6 cut(s) 70, 172, 237, 305, 320, 387
AluI AGCT 6 cut(s) 70, 172, 237, 305, 320, 387
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 1 cut(s) 306
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 436
AsuHPI GGTGA 2 cut(s) 85, 199
AxyI CCTNAGG 1 cut(s) 177
BauI CACGAG 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 344, 386
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 60
BciT130I CCWGG 3 cut(s) 356, 414, 440
BciVI GTATCC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 452
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 2 cut(s) 7, 23
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 2 cut(s) 8, 24
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 3 cut(s) 356, 414, 440
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 3 cut(s) 356, 414, 440
BpiI GAAGAC 2 cut(s) 344, 386
Bpu1102I GCTNAGC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 355, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse118I RCCGGY 2 cut(s) 34, 163
Bse1I ACTGG 1 cut(s) 275
Bse21I CCTNAGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 29
BseBI CCWGG 3 cut(s) 356, 414, 440
BseDI CCNNGG 2 cut(s) 355, 438
BseGI GGATG 2 cut(s) 52, 132
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 159, 168
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 18
BseYI CCCAGC 1 cut(s) 387
BshFI GGCC 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 2 cut(s) 35, 164
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 452
BsnI GGCC 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 129, 276, 311
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 2 cut(s) 23, 105
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 3 cut(s) 160, 169, 474
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 29
BsrFI RCCGGY 2 cut(s) 34, 163
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 2 cut(s) 34, 163
BssECI CCNNGG 2 cut(s) 355, 438
BssMI GATC 3 cut(s) 129, 276, 311
BssNI GRCGYC 1 cut(s) 20
BssSI CACGAG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 3 cut(s) 356, 414, 440
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 165, 435
BstDEI CTNAG 3 cut(s) 168, 177, 461
BstF5I GGATG 2 cut(s) 52, 132
BstKTI GATC 3 cut(s) 132, 279, 314
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 3 cut(s) 129, 276, 311
BstMWI GCNNNNNNNGC 2 cut(s) 31, 169
BstNI CCWGG 3 cut(s) 356, 414, 440
BstSCI CCNGG 3 cut(s) 354, 412, 438
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 2 cut(s) 344, 386
Bsu36I CCTNAGG 1 cut(s) 177
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 437
BtsCI GGATG 2 cut(s) 52, 132
Cac8I GCNNGC 2 cut(s) 165, 435
CciI TCATGA 1 cut(s) 397
Cfr10I RCCGGY 2 cut(s) 34, 163
Cfr13I GGNCC 1 cut(s) 436
CseI GACGC 1 cut(s) 28
Csp6I GTAC 2 cut(s) 226, 403
CviAII CATG 3 cut(s) 101, 190, 398
CviQI GTAC 2 cut(s) 226, 403
DdeI CTNAG 3 cut(s) 168, 177, 461
DpnI GATC 3 cut(s) 131, 278, 313
DpnII GATC 3 cut(s) 129, 276, 311
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 28
Eco81I CCTNAGG 1 cut(s) 177
EcoRII CCWGG 3 cut(s) 354, 412, 438
FaeI CATG 3 cut(s) 104, 193, 401
FaiI YATR 4 cut(s) 102, 191, 222, 399
FatI CATG 3 cut(s) 100, 189, 397
Fnu4HI GCNGC 2 cut(s) 7, 23
FokI GGATG 2 cut(s) 39, 119
Fsp4HI GCNGC 2 cut(s) 7, 23
GluI GCNGC 2 cut(s) 7, 23
GsaI CCCAGC 1 cut(s) 391
HaeIII GGCC 1 cut(s) 437
HapII CCGG 2 cut(s) 35, 164
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 3 cut(s) 104, 193, 401
HinfI GANTC 2 cut(s) 113, 247
HpaII CCGG 2 cut(s) 35, 164
HphI GGTGA 2 cut(s) 85, 199
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 118, 252
Hpy188III TCNNGA 3 cut(s) 176, 185, 398
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 22, 312
HpyAV CCTTC 4 cut(s) 88, 207, 256, 280
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 169
HpyF3I CTNAG 3 cut(s) 168, 177, 461
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 3 cut(s) 104, 193, 401
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Kzo9I GATC 3 cut(s) 129, 276, 311
LmnI GCTCC 3 cut(s) 67, 252, 289
Lsp1109I GCAGC 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 185
MalI GATC 3 cut(s) 131, 278, 313
MboI GATC 3 cut(s) 129, 276, 311
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 1 cut(s) 297
MnlI CCTC 3 cut(s) 58, 158, 172
MroNI GCCGGC 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 2 cut(s) 300, 429
MspA1I CMGCKG 1 cut(s) 387
MspI CCGG 2 cut(s) 35, 164
MspR9I CCNGG 3 cut(s) 356, 414, 440
MvaI CCWGG 3 cut(s) 356, 414, 440
MwoI GCNNNNNNNGC 2 cut(s) 31, 169
NaeI GCCGGC 1 cut(s) 165
NdeII GATC 3 cut(s) 129, 276, 311
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 3 cut(s) 104, 193, 401
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 185
PagI TCATGA 1 cut(s) 397
PdiI GCCGGC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 113, 247
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 2 cut(s) 8, 24
PsiI TTATAA 1 cut(s) 222
Psp6I CCWGG 3 cut(s) 354, 412, 438
PspFI CCCAGC 1 cut(s) 387
PspGI CCWGG 3 cut(s) 354, 412, 438
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 387
RsaI GTAC 2 cut(s) 227, 404
RsaNI GTAC 2 cut(s) 226, 403
SaqAI TTAA 2 cut(s) 300, 429
SatI GCNGC 2 cut(s) 7, 23
Sau3AI GATC 3 cut(s) 129, 276, 311
Sau96I GGNCC 1 cut(s) 436
ScaI AGTACT 1 cut(s) 404
ScrFI CCNGG 3 cut(s) 356, 414, 440
SduI GDGCHC 1 cut(s) 257
Sse9I AATT 1 cut(s) 297
SsiI CCGC 2 cut(s) 23, 105
StyD4I CCNGG 3 cut(s) 354, 412, 438
TaqI TCGA 4 cut(s) 144, 245, 307, 374
TasI AATT 1 cut(s) 297
TatI WGTACW 2 cut(s) 225, 402
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 2 cut(s) 113, 247
Tru1I TTAA 2 cut(s) 300, 429
Tru9I TTAA 2 cut(s) 300, 429
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 18, 89, 386
TspGWI ACGGA 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.