Rh1CG281800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
55336330 .. 55336791
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG281800.1

Sequence Viewer

Length: 462 bp
ATGCCATGCACCAATAGAAGCAACCTTACGCAGACCCCTACGAGTAACAACACCTTCATAACCCTTACCCCTTGTCACACCAATGATGTCAATCATTTCATCTTTCTGGAAGACGGCATCAATGGGGATCCGCTTCTCAAAGAAGCTCTTTGCAAATTCAACCTTTTGAGCAATTGGGCCACCATTCACCTAGATCTCCATGAGATGTGCTTTCTTCTGCTTCAAACCCTTCATCTTCCTGATCTGAGTGTGAGCCAAAACTCGAATAACAGTAGCATATTTAATCAGTTTCTCAAGCTGTCCTTCAATTTCCTTCTTTCCTTCGTCAGTTTCATAGGTCTTGGAGTACTTTGCGAAAGCCTTCTTCTTGGGCTTGACCCAGTTCTTGCAAAATTCCTCCTCTACCTCCTCACTATAGCAAAACTTAAATCGCAAGTCACGAATATAAACAGAAATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.19

Weight (kDa)

6.15

Isoelectric Point (pI)

20.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AclWI GGATC 2 cut(s) 122, 135
AcsI RAATTY 2 cut(s) 155, 392
AfaI GTAC 1 cut(s) 348
AgsI TTSAA 3 cut(s) 160, 224, 307
AluBI AGCT 2 cut(s) 146, 298
AluI AGCT 2 cut(s) 146, 298
AlwI GGATC 2 cut(s) 122, 135
AoxI GGCC 1 cut(s) 177
ApoI RAATTY 2 cut(s) 155, 392
Asp700I GAANNNNTTC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 179
BamHI GGATCC 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 10, 42
BbsI GAAGAC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 130
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 414
BglII AGATCT 1 cut(s) 193
BmcAI AGTACT 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 380
Bse8I GATNNNNATC 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 90
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 2 cut(s) 389, 398
BshFI GGCC 1 cut(s) 179
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 127, 193, 241
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 2 cut(s) 122, 135
BsrI ACTGG 1 cut(s) 380
BssMI GATC 3 cut(s) 127, 193, 241
Bst4CI ACNGT 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 245
BstKTI GATC 3 cut(s) 130, 196, 244
BstMBI GATC 3 cut(s) 127, 193, 241
BstSFI CTRYAG 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 127, 193
BstYI RGATCY 2 cut(s) 127, 193
BsuRI GGCC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 347
CviAII CATG 2 cut(s) 6, 200
CviJI RGCY 6 cut(s) 146, 179, 255, 298, 360, 373
CviKI_1 RGCY 6 cut(s) 146, 179, 255, 298, 360, 373
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 1 cut(s) 245
DpnI GATC 3 cut(s) 129, 195, 243
DpnII GATC 3 cut(s) 127, 193, 241
FaeI CATG 2 cut(s) 9, 203
FaiI YATR 7 cut(s) 7, 59, 201, 278, 335, 416, 446
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 287, 319
FatI CATG 2 cut(s) 5, 199
FspBI CTAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 179
Hin1II CATG 2 cut(s) 9, 203
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 3 cut(s) 107, 239, 439
HpyAV CCTTC 6 cut(s) 64, 239, 313, 323, 331, 371
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 9, 153, 389
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 2 cut(s) 9, 203
Kzo9I GATC 3 cut(s) 127, 193, 241
LpnPI CCDG 3 cut(s) 92, 252, 393
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 3 cut(s) 44, 74, 436
MalI GATC 3 cut(s) 129, 195, 243
MboI GATC 3 cut(s) 127, 193, 241
MboII GAAGA 4 cut(s) 122, 206, 227, 356
MfeI CAATTG 1 cut(s) 172
MflI RGATCY 2 cut(s) 127, 193
MluCI AATT 5 cut(s) 155, 172, 307, 392, 454
MnlI CCTC 4 cut(s) 407, 410, 416, 419
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 2 cut(s) 282, 426
MslI CAYNNNNRTG 1 cut(s) 81
MunI CAATTG 1 cut(s) 172
NdeII GATC 3 cut(s) 127, 193, 241
NlaIII CATG 2 cut(s) 9, 203
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 2 cut(s) 74, 436
PcsI WCGNNNNNNNCGW 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 177
PsuI RGATCY 2 cut(s) 127, 193
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 282, 426
Sau3AI GATC 3 cut(s) 127, 193, 241
Sau96I GGNCC 1 cut(s) 177
ScaI AGTACT 1 cut(s) 348
SetI ASST 8 cut(s) 27, 56, 148, 165, 192, 300, 340, 408
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 5 cut(s) 155, 172, 307, 392, 454
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 263
TasI AATT 5 cut(s) 155, 172, 307, 392, 454
TatI WGTACW 1 cut(s) 346
Tru1I TTAA 2 cut(s) 282, 426
Tru9I TTAA 2 cut(s) 282, 426
TseFI GTSAC 2 cut(s) 74, 436
Tsp45I GTSAC 2 cut(s) 74, 436
TspDTI ATGAA 4 cut(s) 46, 88, 221, 322
XapI RAATTY 2 cut(s) 155, 392
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.