Rh1AG300900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000197
Physical Location & Seq
Reverse (-)
53355472 .. 53356017
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG300900.1

Sequence Viewer

Length: 546 bp
ATGGGATCAAGGATACTTCCAACAAGTTTTCAATCAGTCTCTGAGGAAACCAAGTATCAACCATGTCCTAGTTTCCCAGTGGAGCCACAGGGTTCTAATATGCCCTCGAGGACCTTAGCAACTGACGAAAGTTCTCTATATGAAAGCAGTCACTTTGGTTTCATTCCAGAGTCCACAACTCTTCATGCCACTGGTTCTATGTTCAGGACTCATATGACCGGGCAATGCAGTTATGAAGAAACACATAGTGGATCAAAGAGTTCGGTCATTGTGTGGAAGACATCCCCAATTATCCATAGATCATTTCCCCCAATAGTGTACTTTTTTAACCTGATCAGCGGCGCATATTGGCTCCATATTTTGGCTGGGGAATTTGTTTCAAATGGGAGGAAAAGTATGAGTCTCAAACCTTTACTTATCTTTCTCAAAGAGGTCGTAATCCCAGTCTCAGTGGGAATTTCTTGTCGCGAAAGAAAGCATGGGTTTCTTTTTTCTCTTTTCTTTTGTTTCTGTTCTTATTTTCTGGCCCAGCAAATGTGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.39

Weight (kDa)

8.23

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 106
AccB7I CCANNNNNTGG 1 cut(s) 361
AccII CGCG 1 cut(s) 468
AciI CCGC 1 cut(s) 339
AclWI GGATC 2 cut(s) 13, 259
AcsI RAATTY 2 cut(s) 371, 456
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 2 cut(s) 32, 381
Alw26I GTCTC 3 cut(s) 43, 407, 451
AlwI GGATC 2 cut(s) 13, 259
AlwNI CAGNNNCTG 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 525
ApoI RAATTY 2 cut(s) 371, 456
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 2 cut(s) 111, 526
AsuC2I CCSGG 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 284
BciVI GTATCC 1 cut(s) 6
BclI TGATCA 1 cut(s) 333
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 3 cut(s) 43, 407, 451
BfaI CTAG 1 cut(s) 69
BfuI GTATCC 1 cut(s) 6
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 111, 526
BmiI GGNNCC 2 cut(s) 84, 353
BmrFI CCNGG 1 cut(s) 220
BmrI ACTGGG 2 cut(s) 71, 437
BmuI ACTGGG 2 cut(s) 71, 437
BpiI GAAGAC 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 3 cut(s) 77, 196, 443
Bse3DI GCAATG 1 cut(s) 230
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 33, 462
BseNI ACTGG 3 cut(s) 77, 196, 443
BseYI CCCAGC 2 cut(s) 365, 528
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 527
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 3 cut(s) 43, 407, 451
BsnI GGCC 1 cut(s) 527
BsoBI CYCGRG 1 cut(s) 106
Bsp143I GATC 4 cut(s) 5, 251, 299, 333
Bsp68I TCGCGA 1 cut(s) 468
BspACI CCGC 1 cut(s) 339
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 2 cut(s) 34, 461
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 84, 353
BspPI GGATC 2 cut(s) 13, 259
BsrDI GCAATG 1 cut(s) 230
BsrI ACTGG 3 cut(s) 77, 196, 443
BssMI GATC 4 cut(s) 5, 251, 299, 333
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 3 cut(s) 42, 115, 448
BstF5I GGATG 1 cut(s) 281
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 4 cut(s) 8, 254, 302, 336
BstMAI GTCTC 3 cut(s) 43, 407, 451
BstMBI GATC 4 cut(s) 5, 251, 299, 333
BstSCI CCNGG 1 cut(s) 218
BstUI CGCG 1 cut(s) 468
BstV2I GAAGAC 1 cut(s) 284
BsuI GTATCC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 527
BtsCI GGATG 1 cut(s) 281
BtsIMutI CAGTG 3 cut(s) 84, 189, 456
BtuMI TCGCGA 1 cut(s) 468
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 111, 526
Csp6I GTAC 1 cut(s) 319
CviAII CATG 3 cut(s) 63, 185, 479
CviJI RGCY 4 cut(s) 85, 352, 365, 527
CviKI_1 RGCY 4 cut(s) 85, 352, 365, 527
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 3 cut(s) 42, 115, 448
DpnI GATC 4 cut(s) 7, 253, 301, 335
DpnII GATC 4 cut(s) 5, 251, 299, 333
DraIII CACNNNGTG 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 111
FaeI CATG 3 cut(s) 66, 188, 482
FatI CATG 3 cut(s) 62, 184, 478
FauNDI CATATG 1 cut(s) 213
FbaI TGATCA 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 340
GsaI CCCAGC 2 cut(s) 369, 532
HaeIII GGCC 1 cut(s) 527
HapII CCGG 1 cut(s) 219
HhaI GCGC 1 cut(s) 344
Hin1II CATG 3 cut(s) 66, 188, 482
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 3 cut(s) 170, 208, 400
HpaII CCGG 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 174, 319
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 3 cut(s) 167, 205, 467
Hpy8I GTNNAC 2 cut(s) 174, 319
HpyCH4V TGCA 1 cut(s) 228
HpyF3I CTNAG 3 cut(s) 42, 115, 448
Hsp92II CATG 3 cut(s) 66, 188, 482
HspAI GCGC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 4 cut(s) 5, 251, 299, 333
LmnI GCTCC 2 cut(s) 82, 357
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 149
MalI GATC 4 cut(s) 7, 253, 301, 335
MboI GATC 4 cut(s) 5, 251, 299, 333
MboII GAAGA 3 cut(s) 173, 248, 289
MluCI AATT 3 cut(s) 288, 371, 456
MlyI GAGTC 3 cut(s) 179, 202, 409
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 5 cut(s) 37, 102, 115, 381, 424
MseI TTAA 2 cut(s) 327, 544
MspA1I CMGCKG 1 cut(s) 339
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 220
MvnI CGCG 1 cut(s) 468
NciI CCSGG 1 cut(s) 220
NdeI CATATG 1 cut(s) 213
NdeII GATC 4 cut(s) 5, 251, 299, 333
NlaIII CATG 3 cut(s) 66, 188, 482
NlaIV GGNNCC 2 cut(s) 84, 353
NmuCI GTSAC 1 cut(s) 149
NruI TCGCGA 1 cut(s) 468
PaeR7I CTCGAG 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 1 cut(s) 341
PleI GAGTC 3 cut(s) 178, 202, 408
PpsI GAGTC 3 cut(s) 178, 202, 408
PpuMI RGGWCCY 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 111
PspFI CCCAGC 2 cut(s) 365, 528
PspN4I GGNNCC 2 cut(s) 84, 353
PspPI GGNCC 2 cut(s) 111, 526
PspPPI RGGWCCY 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 41
RruI TCGCGA 1 cut(s) 468
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 2 cut(s) 327, 544
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 4 cut(s) 5, 251, 299, 333
Sau96I GGNCC 2 cut(s) 111, 526
SchI GAGTC 3 cut(s) 179, 202, 409
ScrFI CCNGG 1 cut(s) 220
SetI ASST 4 cut(s) 116, 333, 412, 435
Sfr274I CTCGAG 1 cut(s) 106
SinI GGWCC 1 cut(s) 111
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 3 cut(s) 288, 371, 456
SsiI CCGC 1 cut(s) 339
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 218
TaqI TCGA 1 cut(s) 107
TaqII GACCGA 1 cut(s) 253
TasI AATT 3 cut(s) 288, 371, 456
TatI WGTACW 1 cut(s) 318
TauI GCSGC 1 cut(s) 342
Tru1I TTAA 2 cut(s) 327, 544
Tru9I TTAA 2 cut(s) 327, 544
TscAI CASTG 3 cut(s) 84, 196, 456
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 4 cut(s) 151, 156, 173, 249
TspRI CASTG 3 cut(s) 84, 196, 456
Van91I CCANNNNNTGG 1 cut(s) 361
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 2 cut(s) 371, 456
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 106
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.