Rroxscaffold_4G00325190
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
56952302 .. 56954536
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325190.1

Sequence Viewer

Length: 453 bp
ATGAATCAAGAGGCACAGGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCAGGATGACCGCTGCTCTTCAGCACTGCGGTCACGGGCATCCCACGAGCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATAATTGTAGTGAGTTGCAATCACCATTTGGAGATGGTGATTCTTGTCTTTTAGACGGGAATGAAGTTTCAACTTGTGATGAATATGAGACTGTATATGATGTGTTTCCACAGCTATGTGATCCGCCGGAAGAAAATCTGGAATCACTCTTACGTCCACCTCAGCAACAAGATTACCGCCCCTCCATATGCATAAAGCTGGGGAAATGTTCCACATCCGCTTCAGCCGTAGGATTACCAGCCCTCAATATTGCAGTCACCAATATACGCAAAGTTGGGAAATGTTTCAGATGCCAATCTCTGTTGATAGGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.55

Weight (kDa)

4.53

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 5 cut(s) 64, 82, 260, 313, 354
AclWI GGATC 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 57, 342
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 207
AluBI AGCT 4 cut(s) 103, 110, 250, 334
AluI AGCT 4 cut(s) 103, 110, 250, 334
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 251
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 66
Asp700I GAANNNNTTC 2 cut(s) 111, 419
AsuHPI GGTGA 3 cut(s) 150, 185, 385
AxyI CCTNAGG 1 cut(s) 54
BauI CACGAG 1 cut(s) 98
BbvCI CCTCAGC 2 cut(s) 48, 297
BbvI GCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 48, 164
BceAI ACGGC 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 218
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmsI GCATC 2 cut(s) 101, 416
Bpu10I CCTNAGC 2 cut(s) 48, 297
BsaBI GATNNNNATC 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 430
BseGI GGATG 3 cut(s) 64, 92, 350
BseJI GATNNNNATC 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 3 cut(s) 62, 68, 311
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 334
BshFI GGCC 1 cut(s) 447
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 447
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 5 cut(s) 64, 82, 260, 313, 354
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 3 cut(s) 61, 67, 310
BspPI GGATC 1 cut(s) 251
BspQI GCTCTTC 1 cut(s) 76
BssMI GATC 1 cut(s) 256
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 16, 76
BstDEI CTNAG 3 cut(s) 48, 54, 297
BstF5I GGATG 3 cut(s) 64, 92, 350
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 53
Bsu36I CCTNAGG 1 cut(s) 54
BsuRI GGCC 1 cut(s) 447
BtsCI GGATG 3 cut(s) 64, 92, 350
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
CviJI RGCY 8 cut(s) 52, 103, 110, 250, 334, 362, 377, 447
CviKI_1 RGCY 8 cut(s) 52, 103, 110, 250, 334, 362, 377, 447
DdeI CTNAG 3 cut(s) 48, 54, 297
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 16, 76
EarI CTCTTC 2 cut(s) 16, 76
EciI GGCGGA 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 447
Eco57I CTGAAG 2 cut(s) 57, 342
Eco81I CCTNAGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 329
FaiI YATR 8 cut(s) 222, 232, 234, 253, 323, 325, 329, 401
FauNDI CATATG 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 3 cut(s) 71, 79, 337
Fsp4HI GCNGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 67
GsaI CCCAGC 1 cut(s) 338
HaeIII GGCC 1 cut(s) 447
HapII CCGG 1 cut(s) 263
HinfI GANTC 3 cut(s) 4, 176, 278
HpaII CCGG 1 cut(s) 263
HphI GGTGA 3 cut(s) 150, 185, 385
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 425
Hpy188III TCNNGA 3 cut(s) 8, 56, 275
Hpy8I GTNNAC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 118, 154, 327, 389
HpyF3I CTNAG 3 cut(s) 48, 54, 297
HpySE526I ACGT 1 cut(s) 289
Kzo9I GATC 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 76
LpnPI CCDG 7 cut(s) 2, 41, 89, 260, 276, 320, 387
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 2 cut(s) 101, 416
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 84, 391
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 3 cut(s) 33, 63, 278
MluCI AATT 1 cut(s) 139
MnlI CCTC 7 cut(s) 4, 19, 57, 63, 306, 328, 389
Mph1103I ATGCAT 1 cut(s) 329
MroXI GAANNNNTTC 2 cut(s) 111, 419
MslI CAYNNNNRTG 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 263
NdeI CATATG 1 cut(s) 323
NdeII GATC 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 84, 391
NsiI ATGCAT 1 cut(s) 329
PceI AGGCCT 1 cut(s) 447
PciSI GCTCTTC 1 cut(s) 76
PdmI GAANNNNTTC 2 cut(s) 111, 419
PfeI GAWTC 3 cut(s) 4, 176, 278
PflMI CCANNNNNTGG 1 cut(s) 103
PkrI GCNGC 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 76
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 1 cut(s) 256
SetI ASST 7 cut(s) 49, 105, 112, 252, 292, 298, 336
SfaNI GCATC 2 cut(s) 101, 416
SmiMI CAYNNNNRTG 1 cut(s) 250
Sse9I AATT 1 cut(s) 139
SseBI AGGCCT 1 cut(s) 447
SsiI CCGC 5 cut(s) 64, 82, 260, 313, 354
SspI AATATT 1 cut(s) 385
StuI AGGCCT 1 cut(s) 447
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 292
TasI AATT 1 cut(s) 139
TfiI GAWTC 3 cut(s) 4, 176, 278
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 84, 391
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 2 cut(s) 84, 391
TspDTI ATGAA 3 cut(s) 17, 213, 231
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 103
XmnI GAANNNNTTC 2 cut(s) 111, 419
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.