pycom07g15920
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000197
Physical Location & Seq
Reverse (-)
18398261 .. 18399406
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15920.3

Sequence Viewer

Length: 552 bp
ATGATCCCTGTAGCTTCTCTGCCCTTTCCGAGGAAGCACCCCCACCAAGCCATACAGCAAACAGTTCCACGGGTAGGATTGCCCGGGGTCCCACCAAAACCCAAGACTTTGATCGACCTCAAGTCAATTACTGTTTTTCTTAATCCTACAATAACCCATCCAGCATTCCATTTCTCCTACATGAAAGAGGATGGCTTCCAATGGAATCCCCTTCACCACAGCAGCGGCAGGTGGCATATCACTGCGAGTGGGATTCCGATTCCGCCCCCAGAAGAAGAGCTGATCGGCCATTACTTGCAGTTGAAGCTCCGGGGAATGGATTCCCTCGTCAGCGACGTCATCCGTGAAATCAACATGTGCAACCACGAGCCCTGGGACTTGCCTGAGATGTCACTGATAAAGTCTGATGATGAGGAATGGTACTTCTACAACCGACCAACTTACAAAAAAAACAGCAGAAACGACACCGAAAGGGCGACGAGTGAAGGCTTCTGGAAGATCACTGGCCCGGTGAAAGAAGTCAGGGCTCGAGACAACAAAACTATCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

184

Amino Acids

21.07

Weight (kDa)

7.92

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 219
AatII GACGTC 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 219
AciI CCGC 2 cut(s) 225, 263
AcoI YGGCCR 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 3 cut(s) 30, 74, 316
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 1 cut(s) 304
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 3 cut(s) 14, 280, 307
AluI AGCT 3 cut(s) 14, 280, 307
Alw26I GTCTC 1 cut(s) 525
Ama87I CYCGRG 2 cut(s) 83, 528
AoxI GGCC 2 cut(s) 286, 505
ApeKI GCWGC 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 319
AspS9I GGNCC 2 cut(s) 88, 506
AsuC2I CCSGG 4 cut(s) 84, 85, 311, 509
AsuHPI GGTGA 2 cut(s) 206, 523
AvaI CYCGRG 2 cut(s) 83, 528
AvaII GGWCC 1 cut(s) 88
BanII GRGCYC 2 cut(s) 372, 529
BauI CACGAG 1 cut(s) 365
BbvI GCAGC 1 cut(s) 234
BccI CCATC 2 cut(s) 165, 185
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 4 cut(s) 84, 85, 311, 509
BcoDI GTCTC 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 219
BisI GCNGC 2 cut(s) 223, 226
BlsI GCNGC 2 cut(s) 224, 227
Bme1390I CCNGG 5 cut(s) 84, 85, 311, 373, 509
Bme18I GGWCC 1 cut(s) 88
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 2 cut(s) 83, 528
BmgT120I GGNCC 2 cut(s) 88, 506
BmiI GGNNCC 2 cut(s) 89, 90
BmrFI CCNGG 5 cut(s) 84, 85, 311, 373, 509
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 4 cut(s) 84, 85, 311, 509
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 7 cut(s) 29, 68, 83, 84, 310, 371, 372
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 74, 316
Bse1I ACTGG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 7 cut(s) 29, 68, 83, 84, 310, 371, 372
BseGI GGATG 3 cut(s) 157, 196, 339
BseLI CCNNNNNNNGG 3 cut(s) 30, 74, 316
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 508
BseXI GCAGC 1 cut(s) 234
BshFI GGCC 2 cut(s) 288, 507
BsiHKCI CYCGRG 2 cut(s) 83, 528
BsiSI CCGG 3 cut(s) 84, 310, 509
BslFI GGGAC 2 cut(s) 74, 389
BslI CCNNNNNNNGG 3 cut(s) 30, 74, 316
BsmAI GTCTC 1 cut(s) 525
BsmFI GGGAC 2 cut(s) 74, 389
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 2 cut(s) 288, 507
BsoBI CYCGRG 2 cut(s) 83, 528
Bsp1286I GDGCHC 2 cut(s) 372, 529
Bsp143I GATC 4 cut(s) 3, 111, 282, 498
BspACI CCGC 2 cut(s) 225, 263
BspANI GGCC 2 cut(s) 288, 507
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 89, 90
BspMI ACCTGC 1 cut(s) 219
BspQI GCTCTTC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 7 cut(s) 29, 68, 83, 84, 310, 371, 372
BssMI GATC 4 cut(s) 3, 111, 282, 498
BssNI GRCGYC 1 cut(s) 336
BssSI CACGAG 1 cut(s) 365
Bst2BI CACGAG 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 2 cut(s) 64, 133
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 68
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 3 cut(s) 157, 196, 339
BstKTI GATC 4 cut(s) 6, 114, 285, 501
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 4 cut(s) 3, 111, 282, 498
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstNI CCWGG 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 5 cut(s) 82, 83, 309, 371, 507
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 234
BsuRI GGCC 2 cut(s) 288, 507
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 3 cut(s) 157, 196, 339
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 3 cut(s) 240, 392, 501
BveI ACCTGC 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 88, 506
Cfr9I CCCGGG 1 cut(s) 83
Csp6I GTAC 1 cut(s) 421
CviAII CATG 2 cut(s) 181, 355
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 1 cut(s) 384
DpnI GATC 4 cut(s) 5, 113, 284, 500
DpnII GATC 4 cut(s) 3, 111, 282, 498
DriI GACNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 270
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 1 cut(s) 252
Eco24I GRGCYC 2 cut(s) 372, 529
Eco47I GGWCC 1 cut(s) 88
Eco88I CYCGRG 2 cut(s) 83, 528
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 371
EcoT38I GRGCYC 2 cut(s) 372, 529
FaeI CATG 2 cut(s) 184, 358
FaiI YATR 4 cut(s) 53, 182, 237, 356
FaqI GGGAC 2 cut(s) 74, 389
FatI CATG 2 cut(s) 180, 354
Fnu4HI GCNGC 2 cut(s) 223, 226
FokI GGATG 3 cut(s) 144, 203, 326
FriOI GRGCYC 2 cut(s) 372, 529
Fsp4HI GCNGC 2 cut(s) 223, 226
GluI GCNGC 2 cut(s) 223, 226
HaeIII GGCC 2 cut(s) 288, 507
HapII CCGG 3 cut(s) 84, 310, 509
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 2 cut(s) 184, 358
HinfI GANTC 4 cut(s) 205, 253, 259, 320
HpaII CCGG 3 cut(s) 84, 310, 509
HphI GGTGA 2 cut(s) 206, 523
Hpy188I TCNGA 3 cut(s) 30, 258, 406
Hpy188III TCNNGA 2 cut(s) 493, 530
Hpy99I CGWCG 2 cut(s) 338, 481
HpyAV CCTTC 2 cut(s) 221, 479
HpyCH4III ACNGT 2 cut(s) 64, 133
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 298, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 2 cut(s) 184, 358
KflI GGGWCCC 1 cut(s) 88
Kzo9I GATC 4 cut(s) 3, 111, 282, 498
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 1 cut(s) 234
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 390
MalI GATC 4 cut(s) 5, 113, 284, 500
MboI GATC 4 cut(s) 3, 111, 282, 498
MboII GAAGA 3 cut(s) 284, 287, 508
MhlI GDGCHC 2 cut(s) 372, 529
MluCI AATT 1 cut(s) 126
MnlI CCTC 5 cut(s) 24, 128, 181, 335, 406
MroXI GAANNNNTTC 1 cut(s) 319
MseI TTAA 2 cut(s) 141, 550
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 3 cut(s) 84, 310, 509
MspR9I CCNGG 5 cut(s) 84, 85, 311, 373, 509
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 304
NciI CCSGG 4 cut(s) 84, 85, 311, 509
NdeII GATC 4 cut(s) 3, 111, 282, 498
NlaIII CATG 2 cut(s) 184, 358
NlaIV GGNNCC 2 cut(s) 89, 90
NmuCI GTSAC 1 cut(s) 390
NspI RCATGY 1 cut(s) 358
PaeR7I CTCGAG 1 cut(s) 528
PaqCI CACCTGC 1 cut(s) 219
PasI CCCWGGG 1 cut(s) 372
PciI ACATGT 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 4 cut(s) 205, 253, 259, 320
PkrI GCNGC 2 cut(s) 224, 227
PpuMI RGGWCCY 1 cut(s) 88
PscI ACATGT 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 89, 90
PspPI GGNCC 2 cut(s) 88, 506
PspPPI RGGWCCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 141, 550
SatI GCNGC 2 cut(s) 223, 226
Sau3AI GATC 4 cut(s) 3, 111, 282, 498
Sau96I GGNCC 2 cut(s) 88, 506
ScrFI CCNGG 5 cut(s) 84, 85, 311, 373, 509
SduI GDGCHC 2 cut(s) 372, 529
SetI ASST 6 cut(s) 16, 120, 233, 282, 309, 339
SfcI CTRYAG 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 528
SinI GGWCC 1 cut(s) 88
SlaI CTCGAG 1 cut(s) 528
SmaI CCCGGG 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 119, 528
SmoI CTYRAG 2 cut(s) 119, 528
Sse9I AATT 1 cut(s) 126
SsiI CCGC 2 cut(s) 225, 263
StyD4I CCNGG 5 cut(s) 82, 83, 309, 371, 507
TaaI ACNGT 2 cut(s) 64, 133
TaiI ACGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 114, 529
TasI AATT 1 cut(s) 126
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 4 cut(s) 205, 253, 259, 320
Tru1I TTAA 2 cut(s) 141, 550
Tru9I TTAA 2 cut(s) 141, 550
TscAI CASTG 3 cut(s) 247, 399, 508
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 332
TspMI CCCGGG 1 cut(s) 83
TspRI CASTG 3 cut(s) 247, 399, 508
VpaK11BI GGWCC 1 cut(s) 88
XagI CCTNNNNNAGG 1 cut(s) 28
XceI RCATGY 1 cut(s) 358
XhoI CTCGAG 1 cut(s) 528
XmaI CCCGGG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 319
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.