Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8502503.1

Orthogroup ID

OG0000197

Physical Location & Seq

Genomic Coordinates Forward (+)

2430 .. 3018

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8502503.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggctgcgtcatcctcaagacttcgggtgggttgccgattcgaccccagagagcttccggtgggttaccgattccacccaacagaggaggagttggtcgatcacttcctcaagaacaagatgcaaggctacgccttcgacgaggttccggaagtagacatctgcaagcacgagccttgggatttgcctgcgttttcaccgttaaggtcggatgatgaggagtggttctacttcagtagaccggattacaagtccggcaagaaacagggccaggccaaccgggccaccgagggagggttttggaagatcactgcgaaagagggtactatcagagctcggaggtccaaggctgtgattgggaagaagagaattttgaccttctatactgggaaagttcggagtgggcagaagaccagttgggggattcatgagtactacatacctgaaactcagcttcctaatgctgctaggcaggtgatcactctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

162

Amino Acids

18.75

Weight (kDa)

9.34

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica	MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica	Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis	pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis	RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata	RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora	Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii	Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa	Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha	Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana	Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	1 cut(s)	463
AccI	GTMKAC	2 cut(s)	156, 238
AccIII	TCCGGA	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	217
AdeI	CACNNNGTG	1 cut(s)	486
AfaI	GTAC	2 cut(s)	325, 434
AfiI	CCNNNNNNNGG	3 cut(s)	85, 294, 420
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	3 cut(s)	55, 335, 454
AluI	AGCT	3 cut(s)	55, 335, 454
Alw21I	GWGCWC	1 cut(s)	337
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	3 cut(s)	268, 273, 282
ApeKI	GCWGC	2 cut(s)	5, 464
ApoI	RAATTY	1 cut(s)	369
AspS9I	GGNCC	3 cut(s)	268, 282, 342
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	189, 487
AvaII	GGWCC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	463
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	2 cut(s)	6, 465
BlsI	GCNGC	2 cut(s)	7, 466
BmcAI	AGTACT	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	272, 281
Bme18I	GGWCC	1 cut(s)	342
BmgT120I	GGNCC	3 cut(s)	268, 282, 342
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	272, 281
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	176, 288, 345
BsaWI	WCCGGW	3 cut(s)	58, 148, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 294, 420
Bse1I	ACTGG	2 cut(s)	391, 414
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	3 cut(s)	176, 288, 345
BseGI	GGATG	2 cut(s)	11, 217
BseLI	CCNNNNNNNGG	3 cut(s)	85, 294, 420
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	391, 414
BseRI	GAGGAG	3 cut(s)	101, 104, 233
BseXI	GCAGC	1 cut(s)	451
BshFI	GGCC	3 cut(s)	270, 275, 284
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	5 cut(s)	59, 149, 242, 255, 280
BslI	CCNNNNNNNGG	3 cut(s)	85, 294, 420
BsnI	GGCC	3 cut(s)	270, 275, 284
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	100, 306, 477
BspANI	GGCC	3 cut(s)	270, 275, 284
BspCNI	CTCAG	1 cut(s)	463
BspEI	TCCGGA	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	391, 414
BssECI	CCNNGG	3 cut(s)	176, 288, 345
BssMI	GATC	3 cut(s)	100, 306, 477
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	2 cut(s)	176, 345
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	167, 189
BstDEI	CTNAG	1 cut(s)	450
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	11, 217
BstKTI	GATC	3 cut(s)	103, 309, 480
BstMBI	GATC	3 cut(s)	100, 306, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	270, 279
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	270, 275, 284
BtsCI	GGATG	2 cut(s)	11, 217
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	167, 189
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	3 cut(s)	268, 282, 342
Csp6I	GTAC	2 cut(s)	324, 433
CviAII	CATG	1 cut(s)	428
CviQI	GTAC	2 cut(s)	324, 433
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	102, 308, 479
DpnII	GATC	3 cut(s)	100, 306, 477
DraIII	CACNNNGTG	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	2 cut(s)	176, 345
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	217
Eco91I	GGTNACC	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	176, 345
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	176, 345
FaeI	CATG	1 cut(s)	431
FaiI	YATR	3 cut(s)	384, 429, 440
FatI	CATG	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	477
FblI	GTMKAC	2 cut(s)	156, 238
Fnu4HI	GCNGC	2 cut(s)	6, 465
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	6, 465
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	2 cut(s)	6, 465
HaeIII	GGCC	3 cut(s)	270, 275, 284
HapII	CCGG	5 cut(s)	59, 149, 242, 255, 280
Hin1II	CATG	1 cut(s)	431
HinfI	GANTC	3 cut(s)	39, 72, 424
HpaII	CCGG	5 cut(s)	59, 149, 242, 255, 280
HphI	GGTGA	2 cut(s)	189, 487
Hpy166II	GTNNAC	2 cut(s)	157, 239
Hpy188I	TCNGA	4 cut(s)	211, 332, 339, 399
Hpy188III	TCNNGA	4 cut(s)	18, 112, 149, 428
Hpy8I	GTNNAC	2 cut(s)	157, 239
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	145, 388
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	124, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	431
Kpn2I	TCCGGA	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	3 cut(s)	100, 306, 477
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	3 cut(s)	102, 308, 479
MboI	GATC	3 cut(s)	100, 306, 477
MboII	GAAGA	4 cut(s)	316, 373, 376, 421
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	189
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	1 cut(s)	203
MspI	CCGG	5 cut(s)	59, 149, 242, 255, 280
MspR9I	CCNGG	2 cut(s)	272, 281
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	3 cut(s)	100, 306, 477
NlaIII	CATG	1 cut(s)	431
NlaIV	GGNNCC	1 cut(s)	147
PagI	TCATGA	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	39, 72, 424
PkrI	GCNGC	2 cut(s)	7, 466
Psp124BI	GAGCTC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	270
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	268, 282, 342
RsaI	GTAC	2 cut(s)	325, 434
RsaNI	GTAC	2 cut(s)	324, 433
SacI	GAGCTC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	2 cut(s)	6, 465
Sau3AI	GATC	3 cut(s)	100, 306, 477
Sau96I	GGNCC	3 cut(s)	268, 282, 342
ScaI	AGTACT	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	272, 281
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	9 cut(s)	57, 147, 209, 337, 344, 380, 445, 456, 477
SfaNI	GCATC	1 cut(s)	111
SfiI	GGCCNNNNNGGCC	1 cut(s)	281
SinI	GGWCC	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	16, 110
SmoI	CTYRAG	2 cut(s)	16, 110
Sse9I	AATT	1 cut(s)	369
SspMI	CTAG	1 cut(s)	468
SstI	GAGCTC	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	270, 279
StyI	CCWWGG	2 cut(s)	176, 345
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	42, 99, 138
TasI	AATT	1 cut(s)	369
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	3 cut(s)	39, 72, 424
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	2 cut(s)	5, 464
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	1 cut(s)	369
XmiI	GTMKAC	2 cut(s)	156, 238
XspI	CTAG	1 cut(s)	468
ZrmI	AGTACT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.