Rh1BG263800
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000197
Physical Location & Seq
Reverse (-)
39757691 .. 39786912
29222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG263800.1

Sequence Viewer

Length: 627 bp
ATGTCCTTCAATATTCTTCTTTCCTTCGTCAGTTTCATAGGTGTTGGAGTACTTTGCGAAAGCCTTCTTCTTGGACTTGCACCGGTTCTTGCACACAAAAATGATGAACCACTTTTTCATCAATCTCAGCCTCTGGATGACTGCTGCTCCTCTGCAGTGCGGTCACGGGCATCCCTAGAGCTGGAAGCTGTTCTGCAAGCCATTGGCACTAATGATGATTGTAATAATTTGCAATCACCATGTGGAGATAGTACTTCTTGTCTAGAAGACAGAAATGAAGTTTCAACCTGTGATGAAGATGAGAATATAGATGGTGTGTTTCCACAGGTGCACAAAAATGATGAATCACTTTTTCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCGGTTACCGGCATCCCTAGTGTTGGAAGCTGTTCGGCAAGCCAATGGCACTAACGATGATTGTAATAAGTTGCAATCACCATTTGGAGATTCTTGTCATCTAGACAGGAATGAAGTTTCAACCTGTGATAGAGATGAGACTATGGATGATGTTTTATCACTGAGATTCATACTTGTTAACCATGATCTCGCCTCAAATATACGCAGGGCGACTTTGTTATCTGTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

208

Amino Acids

22.71

Weight (kDa)

4.3

Isoelectric Point (pI)

69.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 160, 397
AdeI CACNNNGTG 1 cut(s) 242
AfaI GTAC 2 cut(s) 51, 253
AfiI CCNNNNNNNGG 2 cut(s) 181, 418
AgeI ACCGGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 10, 285, 516
AluBI AGCT 3 cut(s) 181, 188, 425
AluI AGCT 3 cut(s) 181, 188, 425
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 527
Alw44I GTGCAC 1 cut(s) 329
AlwNI CAGNNNCTG 2 cut(s) 133, 370
ApaLI GTGCAC 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 144, 381
AsiGI ACCGGT 1 cut(s) 82
Asp700I GAANNNNTTC 3 cut(s) 63, 189, 426
AsuHPI GGTGA 2 cut(s) 228, 465
BaeGI GKGCMC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 2 cut(s) 363, 388
BbvI GCAGC 2 cut(s) 131, 368
BccI CCATC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 4 cut(s) 176, 263, 413, 497
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 145, 382
BlsI GCNGC 2 cut(s) 146, 383
BmcAI AGTACT 2 cut(s) 51, 253
BmsI GCATC 2 cut(s) 179, 416
BpiI GAAGAC 1 cut(s) 273
Bpu10I CCTNAGC 2 cut(s) 363, 388
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 418
Bse118I RCCGGY 2 cut(s) 82, 403
BseGI GGATG 5 cut(s) 142, 170, 379, 407, 547
BseLI CCNNNNNNNGG 2 cut(s) 181, 418
BseMII CTCAG 4 cut(s) 140, 377, 402, 548
BseRI GAGGAG 2 cut(s) 139, 376
BseSI GKGCMC 1 cut(s) 333
BseXI GCAGC 2 cut(s) 131, 368
BshTI ACCGGT 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 83, 404
BslI CCNNNNNNNGG 2 cut(s) 181, 418
BsmAI GTCTC 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 1 cut(s) 580
BspACI CCGC 2 cut(s) 160, 397
BspCNI CTCAG 4 cut(s) 139, 376, 401, 549
BspMAI CTGCAG 1 cut(s) 157
BsrFI RCCGGY 2 cut(s) 82, 403
BssAI RCCGGY 2 cut(s) 82, 403
BssMI GATC 1 cut(s) 580
BstC8I GCNNGC 2 cut(s) 198, 435
BstDEI CTNAG 4 cut(s) 126, 363, 388, 557
BstEII GGTNACC 1 cut(s) 399
BstF5I GGATG 5 cut(s) 142, 170, 379, 407, 547
BstKTI GATC 1 cut(s) 583
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 1 cut(s) 580
BstPI GGTNACC 1 cut(s) 399
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 131, 368
BstV2I GAAGAC 1 cut(s) 273
BtsCI GGATG 5 cut(s) 142, 170, 379, 407, 547
BtsI GCAGTG 2 cut(s) 162, 392
BtsIMutI CAGTG 3 cut(s) 162, 392, 554
Cac8I GCNNGC 2 cut(s) 198, 435
CaiI CAGNNNCTG 2 cut(s) 133, 370
Cfr10I RCCGGY 2 cut(s) 82, 403
Csp6I GTAC 2 cut(s) 50, 252
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 2 cut(s) 240, 578
CviJI RGCY 8 cut(s) 63, 130, 181, 188, 200, 367, 425, 437
CviKI_1 RGCY 8 cut(s) 63, 130, 181, 188, 200, 367, 425, 437
CviQI GTAC 2 cut(s) 50, 252
DdeI CTNAG 4 cut(s) 126, 363, 388, 557
DpnI GATC 1 cut(s) 582
DpnII GATC 1 cut(s) 580
DraIII CACNNNGTG 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 399
EcoO65I GGTNACC 1 cut(s) 399
FaeI CATG 2 cut(s) 243, 581
FaiI YATR 7 cut(s) 38, 241, 308, 539, 566, 579, 596
FatI CATG 2 cut(s) 239, 577
Fnu4HI GCNGC 2 cut(s) 145, 382
FokI GGATG 5 cut(s) 149, 157, 386, 394, 554
Fsp4HI GCNGC 2 cut(s) 145, 382
FspBI CTAG 4 cut(s) 176, 263, 413, 497
GluI GCNGC 2 cut(s) 145, 382
HapII CCGG 2 cut(s) 83, 404
Hin1II CATG 2 cut(s) 243, 581
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 3 cut(s) 344, 485, 561
HpaI GTTAAC 1 cut(s) 574
HpaII CCGG 2 cut(s) 83, 404
HphI GGTGA 2 cut(s) 228, 465
Hpy166II GTNNAC 2 cut(s) 331, 574
Hpy188III TCNNGA 4 cut(s) 134, 263, 371, 497
Hpy8I GTNNAC 2 cut(s) 331, 574
HpyAV CCTTC 3 cut(s) 16, 34, 74
HpyCH4V TGCA 7 cut(s) 80, 92, 155, 196, 232, 331, 469
HpyF3I CTNAG 4 cut(s) 126, 363, 388, 557
Hsp92II CATG 2 cut(s) 243, 581
KspAI GTTAAC 1 cut(s) 574
Kzo9I GATC 1 cut(s) 580
LmnI GCTCC 2 cut(s) 152, 389
Lsp1109I GCAGC 2 cut(s) 131, 368
LweI GCATC 2 cut(s) 179, 416
MaeI CTAG 4 cut(s) 176, 263, 413, 497
MaeIII GTNAC 2 cut(s) 162, 399
MalI GATC 1 cut(s) 582
MboI GATC 1 cut(s) 580
MboII GAAGA 4 cut(s) 8, 59, 278, 308
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 1 cut(s) 226
MmeI TCCRAC 2 cut(s) 25, 399
MnlI CCTC 6 cut(s) 141, 160, 372, 378, 397, 598
MroXI GAANNNNTTC 3 cut(s) 63, 189, 426
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 2 cut(s) 99, 336
MspI CCGG 2 cut(s) 83, 404
NdeII GATC 1 cut(s) 580
NlaIII CATG 2 cut(s) 243, 581
NmuCI GTSAC 1 cut(s) 162
PdmI GAANNNNTTC 3 cut(s) 63, 189, 426
PfeI GAWTC 3 cut(s) 344, 485, 561
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 2 cut(s) 146, 383
PspEI GGTNACC 1 cut(s) 399
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 2 cut(s) 133, 370
RsaI GTAC 2 cut(s) 51, 253
RsaNI GTAC 2 cut(s) 50, 252
RseI CAYNNNNRTG 2 cut(s) 99, 336
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 2 cut(s) 145, 382
Sau3AI GATC 1 cut(s) 580
ScaI AGTACT 2 cut(s) 51, 253
SduI GDGCHC 1 cut(s) 333
SetI ASST 8 cut(s) 43, 183, 190, 290, 330, 364, 427, 521
SfaNI GCATC 2 cut(s) 179, 416
SfcI CTRYAG 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 99, 336
Sse9I AATT 1 cut(s) 226
SsiI CCGC 2 cut(s) 160, 397
SspI AATATT 1 cut(s) 13
SspMI CTAG 4 cut(s) 176, 263, 413, 497
TasI AATT 1 cut(s) 226
TatI WGTACW 2 cut(s) 49, 251
TfiI GAWTC 3 cut(s) 344, 485, 561
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 3 cut(s) 162, 399, 561
TseFI GTSAC 1 cut(s) 162
TseI GCWGC 2 cut(s) 144, 381
Tsp45I GTSAC 1 cut(s) 162
TspDTI ATGAA 9 cut(s) 25, 107, 120, 291, 309, 344, 357, 522, 553
TspRI CASTG 3 cut(s) 162, 399, 561
VneI GTGCAC 1 cut(s) 329
XbaI TCTAGA 2 cut(s) 262, 496
XmnI GAANNNNTTC 3 cut(s) 63, 189, 426
XspI CTAG 4 cut(s) 176, 263, 413, 497
ZrmI AGTACT 2 cut(s) 51, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.