Rroxscaffold_4G00325210
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000197
Physical Location & Seq
Forward (+)
56960806 .. 56963313
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325210.1

Sequence Viewer

Length: 810 bp
ATGGAGTGGTGGTTCTTCACCAGAAAGTATTACAATTACAACAAAAGCTCTCGCTCGAATCGGAGCACGAAGAAGGGATACTGGGAAATCACAGGCAAGGAGCCTGGGATTAAGGCTCGACGATCCAAAGCTGAAATTGGGAACAAGAGGACATTGACTTTTTACCAGGATCGTGTGCCGAAATCGAACAAGACCAGCTGGGTCATTCTTGAGTACTATCTTCCTGGAAATGTTGTTATTTCGTATACGAAGCAGGCCCAGGGCGACTTTGTTATCTGTCGCTTGAAGATTAAATCAGATGAGAAGGATTCTTCGGTCAGTAATGAAGGAGAACCCGGTAGCGCTGGTGTGTCAAATTGCGAAAATCAAGCTGCTGATGAAATGAATCAAGAGGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCCCCTCAGCACTGCAGTCACCCACATCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATGATTGTATTAAGTTGCAATCACCATTTGGAGATGGTGGTTCTTGTCTTCTAGACGGGAATAAAGTTTCAACCTGTGATGAAGATGAGACGGTGTGTGATGTGTTTCCACATTGCAGCCCTCAATATTGCAGTCACCAATATACACAAAGTTGGGAAATGTTTCAGATGGGAATCTCTATTTTGGTGAATGCAATAATTGGCAATCTGCATTTAAGAAAAAAGTTTCAACCAATGAAGTTGACATACCAGTTAGACATATCTTGTCTAATTTTGAAAATCAAGCTACAGATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

269

Amino Acids

30.62

Weight (kDa)

6.13

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 73 5.5e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 808
AccB7I CCANNNNNTGG 1 cut(s) 478
AccI GTMKAC 1 cut(s) 245
AclWI GGATC 2 cut(s) 117, 177
AfaI GTAC 1 cut(s) 215
AfeI AGCGCT 1 cut(s) 343
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 4 cut(s) 286, 582, 740, 787
AjnI CCWGG 4 cut(s) 103, 165, 223, 258
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 7 cut(s) 48, 131, 198, 371, 478, 485, 796
AluI AGCT 7 cut(s) 48, 131, 198, 371, 478, 485, 796
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 2 cut(s) 117, 177
AlwNI CAGNNNCTG 1 cut(s) 430
Aor51HI AGCGCT 1 cut(s) 343
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 371, 441, 627
Asp700I GAANNNNTTC 2 cut(s) 486, 672
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 5 cut(s) 10, 453, 525, 638, 709
BarI GAAGNNNNNNTAC 4 cut(s) 62, 94, 740, 772
BbsI GAAGAC 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 68
BbvCI CCTCAGC 2 cut(s) 423, 448
BbvI GCAGC 3 cut(s) 358, 428, 639
BccI CCATC 3 cut(s) 423, 539, 673
BciT130I CCWGG 4 cut(s) 105, 167, 225, 260
BciVI GTATCC 1 cut(s) 71
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 593
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 2 cut(s) 455, 797
BfoI RGCGCY 1 cut(s) 345
BfuI GTATCC 1 cut(s) 71
BisI GCNGC 3 cut(s) 372, 442, 628
BlsI GCNGC 3 cut(s) 373, 443, 629
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 5 cut(s) 105, 167, 225, 260, 336
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 5 cut(s) 105, 167, 225, 260, 336
BmrI ACTGGG 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 91
BpiI GAAGAC 1 cut(s) 551
Bpu10I CCTNAGC 2 cut(s) 423, 448
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 683
BsaJI CCNNGG 3 cut(s) 104, 258, 259
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 2 cut(s) 86, 760
Bse3DI GCAATG 1 cut(s) 622
Bse8I GATNNNNATC 1 cut(s) 683
BseBI CCWGG 4 cut(s) 105, 167, 225, 260
BseDI CCNNGG 3 cut(s) 104, 258, 259
BseGI GGATG 2 cut(s) 439, 467
BseJI GATNNNNATC 1 cut(s) 683
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 2 cut(s) 437, 462
BseNI ACTGG 2 cut(s) 86, 760
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 358, 428, 639
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 1 cut(s) 593
BsmBI CGTCTC 1 cut(s) 593
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 122, 169
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 2 cut(s) 436, 461
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 2 cut(s) 117, 177
BsrDI GCAATG 1 cut(s) 622
BsrI ACTGG 2 cut(s) 86, 760
BssECI CCNNGG 3 cut(s) 104, 258, 259
BssMI GATC 2 cut(s) 122, 169
BssNAI GTATAC 1 cut(s) 246
Bst1107I GTATAC 1 cut(s) 246
Bst2UI CCWGG 4 cut(s) 105, 167, 225, 260
Bst4CI ACNGT 1 cut(s) 604
Bst6I CTCTTC 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 423, 448
BstF5I GGATG 2 cut(s) 439, 467
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 2 cut(s) 125, 172
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 2 cut(s) 122, 169
BstNI CCWGG 4 cut(s) 105, 167, 225, 260
BstSCI CCNGG 5 cut(s) 103, 165, 223, 258, 334
BstSFI CTRYAG 2 cut(s) 455, 797
BstV1I GCAGC 3 cut(s) 358, 428, 639
BstV2I GAAGAC 1 cut(s) 551
BstZ17I GTATAC 1 cut(s) 246
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 2 cut(s) 439, 467
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 1 cut(s) 452
Cac8I GCNNGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 430
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 214
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 423, 448
DpnI GATC 2 cut(s) 124, 171
DpnII GATC 2 cut(s) 122, 169
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Eco47III AGCGCT 1 cut(s) 343
EcoRII CCWGG 4 cut(s) 103, 165, 223, 258
Esp3I CGTCTC 1 cut(s) 593
FaiI YATR 5 cut(s) 246, 654, 757, 770, 808
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 3 cut(s) 372, 442, 628
FokI GGATG 2 cut(s) 446, 454
Fsp4HI GCNGC 3 cut(s) 372, 442, 628
FspBI CTAG 1 cut(s) 563
GlaI GCGC 1 cut(s) 343
GluI GCNGC 3 cut(s) 372, 442, 628
GsaI CCCAGC 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 344
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HinfI GANTC 4 cut(s) 58, 308, 385, 684
HpaII CCGG 1 cut(s) 336
HphI GGTGA 5 cut(s) 10, 453, 525, 638, 709
Hpy166II GTNNAC 2 cut(s) 246, 753
Hpy188I TCNGA 3 cut(s) 63, 298, 678
Hpy188III TCNNGA 4 cut(s) 209, 389, 431, 563
Hpy8I GTNNAC 2 cut(s) 246, 753
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 3 cut(s) 67, 298, 320
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4V TGCA 7 cut(s) 457, 493, 529, 627, 642, 704, 721
HpyF3I CTNAG 2 cut(s) 423, 448
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 2 cut(s) 122, 169
LmnI GCTCC 2 cut(s) 63, 100
Lsp1109I GCAGC 3 cut(s) 358, 428, 639
MaeI CTAG 1 cut(s) 563
MaeIII GTNAC 2 cut(s) 459, 644
MalI GATC 2 cut(s) 124, 171
MboI GATC 2 cut(s) 122, 169
MboII GAAGA 8 cut(s) 7, 82, 212, 298, 303, 408, 551, 605
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 5 cut(s) 34, 135, 355, 708, 780
MnlI CCTC 7 cut(s) 141, 385, 394, 432, 438, 457, 642
MroXI GAANNNNTTC 2 cut(s) 486, 672
MseI TTAA 4 cut(s) 111, 291, 522, 725
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 5 cut(s) 105, 167, 225, 260, 336
Mva1269I GAATGC 1 cut(s) 706
MvaI CCWGG 4 cut(s) 105, 167, 225, 260
NciI CCSGG 1 cut(s) 336
NdeII GATC 2 cut(s) 122, 169
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 2 cut(s) 459, 644
PasI CCCWGGG 1 cut(s) 259
PctI GAATGC 1 cut(s) 706
PdmI GAANNNNTTC 2 cut(s) 486, 672
PfeI GAWTC 4 cut(s) 58, 308, 385, 684
PflMI CCANNNNNTGG 1 cut(s) 478
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 3 cut(s) 373, 443, 629
PsiI TTATAA 1 cut(s) 808
Psp6I CCWGG 4 cut(s) 103, 165, 223, 258
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 4 cut(s) 103, 165, 223, 258
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 459
PstNI CAGNNNCTG 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 198
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 4 cut(s) 111, 291, 522, 725
SatI GCNGC 3 cut(s) 372, 442, 628
Sau3AI GATC 2 cut(s) 122, 169
Sau96I GGNCC 1 cut(s) 256
ScaI AGTACT 1 cut(s) 215
ScrFI CCNGG 5 cut(s) 105, 167, 225, 260, 336
SduI GDGCHC 1 cut(s) 68
SetI ASST 9 cut(s) 50, 133, 200, 373, 424, 480, 487, 587, 798
SfcI CTRYAG 2 cut(s) 455, 797
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 5 cut(s) 34, 135, 355, 708, 780
SspI AATATT 1 cut(s) 638
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 5 cut(s) 103, 165, 223, 258, 334
TaaI ACNGT 1 cut(s) 604
TaqI TCGA 3 cut(s) 56, 118, 185
TaqII GACCGA 1 cut(s) 304
TasI AATT 5 cut(s) 34, 135, 355, 708, 780
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 4 cut(s) 58, 308, 385, 684
Tru1I TTAA 4 cut(s) 111, 291, 522, 725
Tru9I TTAA 4 cut(s) 111, 291, 522, 725
TscAI CASTG 1 cut(s) 459
TseFI GTSAC 2 cut(s) 459, 644
TseI GCWGC 3 cut(s) 371, 441, 627
Tsp45I GTSAC 2 cut(s) 459, 644
TspDTI ATGAA 5 cut(s) 339, 393, 398, 606, 761
TspRI CASTG 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 478
XbaI TCTAGA 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 245
XmnI GAANNNNTTC 2 cut(s) 486, 672
XspI CTAG 1 cut(s) 563
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.