Rroxscaffold_159G00432930
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000197
Physical Location & Seq
Reverse (-)
617721 .. 634364
16644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00432930.1

Sequence Viewer

Length: 741 bp
ATGGAAACAGAGCCACTCCAAAATCAAATGATACCCGCCACCGATCTGGAGCGGGTCCGGATTAAAATCCGGTCCATTTACAGGTTTAGCAATGAGTTGCAATCTTCGTTTGGGGATAATGACTCTTCTCTCACACAGTTCTTGAATACAAATTTTGCTTATCAGGATTATTACTCGTCTGATCAAACAGCACAGACTCCTTTCAAAGACTCTAACCTGCCAACGTCATTAGGAAGGGTCTACCATGGGGATAGTGGAGTAAGCAATGATACAAACATTGAAGTAGCCCATGGATGGGATCCAAATTTATCAATATATGGAAATGAAATTCATTTTGATATATTTAACAAGAAATTAAAGGGATCAGCATGTACGATTCTAATTGACAAGATTGAGGAGACTGTTGTGGTTCAGCAGGATGCTCAGAATATCATGCATGAGAAGGATGATCTTGAGGAGGCATCGGATAGTGATAATGAGCATCAAGTGATGCAAGAGGGTTCCGACATTGTTCACTCTCCCACTAATAAGGGTGCTAACCCTCTGACACCAATTTCAAGTTGGTATGATGAATCCGAACGTGAGGAAGAGGGTGAGGAATTCACAGTTGTTAAGTCAAAGTCCCAGAAGAAACTGATGAAGTGTCAGAATTTGGAAATCTTTCTTCTCGCTAAGAAGCAACTTGAGGAAGTACAGCAGGTTTCTCCTCGGTGCAAGAGGCAATTTGATTCAAGTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

246

Amino Acids

28.07

Weight (kDa)

4.68

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 225, 688
AccBSI CCGCTC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 57
AciI CCGC 2 cut(s) 36, 52
AclWI GGATC 3 cut(s) 293, 306, 370
AcsI RAATTY 5 cut(s) 151, 304, 327, 599, 649
AfaI GTAC 2 cut(s) 373, 693
AfiI CCNNNNNNNGG 3 cut(s) 81, 294, 295
AgsI TTSAA 5 cut(s) 145, 205, 281, 558, 732
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 3 cut(s) 293, 306, 370
Aor13HI TCCGGA 1 cut(s) 57
ApoI RAATTY 5 cut(s) 151, 304, 327, 599, 649
Asp700I GAANNNNTTC 1 cut(s) 660
AspS9I GGNCC 2 cut(s) 55, 72
AsuHPI GGTGA 1 cut(s) 605
AvaII GGWCC 2 cut(s) 55, 72
BamHI GGATCC 1 cut(s) 298
BccI CCATC 1 cut(s) 288
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 392
BfuAI ACCTGC 2 cut(s) 225, 688
Bme18I GGWCC 2 cut(s) 55, 72
BmgT120I GGNCC 2 cut(s) 55, 72
BmiI GGNNCC 3 cut(s) 56, 300, 502
BmsI GCATC 4 cut(s) 409, 470, 480, 490
BpmI CTGGAG 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 473, 704
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 244, 289, 707
BsaWI WCCGGW 2 cut(s) 57, 69
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 294, 295
Bse3DI GCAATG 2 cut(s) 97, 271
Bse8I GATNNNNATC 1 cut(s) 65
BseAI TCCGGA 1 cut(s) 57
BseDI CCNNGG 3 cut(s) 244, 289, 707
BseGI GGATG 3 cut(s) 299, 424, 451
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 81, 294, 295
BseMI GCAATG 2 cut(s) 97, 271
BseMII CTCAG 1 cut(s) 437
BseRI GAGGAG 3 cut(s) 410, 470, 696
BsiSI CCGG 2 cut(s) 58, 70
BslFI GGGAC 1 cut(s) 607
BslI CCNNNNNNNGG 3 cut(s) 81, 294, 295
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 607
Bsp13I TCCGGA 1 cut(s) 57
Bsp143I GATC 5 cut(s) 43, 181, 298, 362, 448
Bsp19I CCATGG 2 cut(s) 244, 289
BspACI CCGC 2 cut(s) 36, 52
BspCNI CTCAG 1 cut(s) 436
BspEI TCCGGA 1 cut(s) 57
BspLI GGNNCC 3 cut(s) 56, 300, 502
BspMI ACCTGC 2 cut(s) 225, 688
BspPI GGATC 3 cut(s) 293, 306, 370
BsrBI CCGCTC 1 cut(s) 52
BsrDI GCAATG 2 cut(s) 97, 271
BssECI CCNNGG 3 cut(s) 244, 289, 707
BssMI GATC 5 cut(s) 43, 181, 298, 362, 448
BssT1I CCWWGG 2 cut(s) 244, 289
Bst4CI ACNGT 3 cut(s) 138, 403, 607
Bst6I CTCTTC 2 cut(s) 130, 582
BstDEI CTNAG 2 cut(s) 423, 672
BstDSI CCRYGG 2 cut(s) 244, 289
BstF5I GGATG 3 cut(s) 299, 424, 451
BstKTI GATC 5 cut(s) 46, 184, 301, 365, 451
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 5 cut(s) 43, 181, 298, 362, 448
BstNSI RCATGY 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 1 cut(s) 298
BtgI CCRYGG 2 cut(s) 244, 289
BtsCI GGATG 3 cut(s) 299, 424, 451
BveI ACCTGC 2 cut(s) 225, 688
Cfr13I GGNCC 2 cut(s) 55, 72
Csp6I GTAC 2 cut(s) 372, 692
CviAII CATG 5 cut(s) 245, 290, 369, 433, 437
CviJI RGCY 2 cut(s) 13, 287
CviKI_1 RGCY 2 cut(s) 13, 287
CviQI GTAC 2 cut(s) 372, 692
DdeI CTNAG 2 cut(s) 423, 672
DpnI GATC 5 cut(s) 45, 183, 300, 364, 450
DpnII GATC 5 cut(s) 43, 181, 298, 362, 448
Eam1104I CTCTTC 2 cut(s) 130, 582
EarI CTCTTC 2 cut(s) 130, 582
Eco130I CCWWGG 2 cut(s) 244, 289
Eco47I GGWCC 2 cut(s) 55, 72
EcoRI GAATTC 1 cut(s) 599
EcoT14I CCWWGG 2 cut(s) 244, 289
EcoT22I ATGCAT 1 cut(s) 438
ErhI CCWWGG 2 cut(s) 244, 289
FaeI CATG 5 cut(s) 248, 293, 372, 436, 440
FaqI GGGAC 1 cut(s) 607
FatI CATG 5 cut(s) 244, 289, 368, 432, 436
FauI CCCGC 2 cut(s) 43, 45
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 240
FokI GGATG 3 cut(s) 306, 431, 458
GsuI CTGGAG 1 cut(s) 68
HapII CCGG 2 cut(s) 58, 70
Hin1II CATG 5 cut(s) 248, 293, 372, 436, 440
HinfI GANTC 6 cut(s) 122, 196, 209, 376, 572, 728
HpaII CCGG 2 cut(s) 58, 70
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 2 cut(s) 241, 514
Hpy188I TCNGA 7 cut(s) 181, 426, 466, 505, 546, 577, 648
Hpy188III TCNNGA 5 cut(s) 47, 58, 142, 164, 452
Hpy8I GTNNAC 2 cut(s) 241, 514
HpyAV CCTTC 2 cut(s) 228, 436
HpyCH4III ACNGT 3 cut(s) 138, 403, 607
HpyCH4IV ACGT 2 cut(s) 224, 580
HpyCH4V TGCA 4 cut(s) 100, 436, 493, 714
HpyF3I CTNAG 2 cut(s) 423, 672
HpySE526I ACGT 2 cut(s) 224, 580
Hsp92II CATG 5 cut(s) 248, 293, 372, 436, 440
Kpn2I TCCGGA 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 5 cut(s) 43, 181, 298, 362, 448
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 9 cut(s) 32, 67, 71, 83, 149, 230, 401, 638, 683
LweI GCATC 4 cut(s) 409, 470, 480, 490
MaeII ACGT 2 cut(s) 224, 580
MalI GATC 5 cut(s) 45, 183, 300, 364, 450
MbiI CCGCTC 1 cut(s) 52
MboI GATC 5 cut(s) 43, 181, 298, 362, 448
MboII GAAGA 5 cut(s) 96, 117, 599, 640, 656
MflI RGATCY 1 cut(s) 298
MluCI AATT 9 cut(s) 151, 304, 327, 353, 381, 552, 599, 649, 722
MlyI GAGTC 3 cut(s) 116, 190, 203
MmeI TCCRAC 1 cut(s) 528
Mph1103I ATGCAT 1 cut(s) 438
MroI TCCGGA 1 cut(s) 57
MroXI GAANNNNTTC 1 cut(s) 660
MseI TTAA 4 cut(s) 63, 345, 356, 612
MspI CCGG 2 cut(s) 58, 70
NcoI CCATGG 2 cut(s) 244, 289
NdeII GATC 5 cut(s) 43, 181, 298, 362, 448
NlaIII CATG 5 cut(s) 248, 293, 372, 436, 440
NlaIV GGNNCC 3 cut(s) 56, 300, 502
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 3 cut(s) 376, 572, 728
PleI GAGTC 3 cut(s) 116, 190, 203
PpsI GAGTC 3 cut(s) 116, 190, 203
PspN4I GGNNCC 3 cut(s) 56, 300, 502
PspPI GGNCC 2 cut(s) 55, 72
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 2 cut(s) 373, 693
RsaNI GTAC 2 cut(s) 372, 692
SaqAI TTAA 4 cut(s) 63, 345, 356, 612
Sau3AI GATC 5 cut(s) 43, 181, 298, 362, 448
Sau96I GGNCC 2 cut(s) 55, 72
SchI GAGTC 3 cut(s) 116, 190, 203
SetI ASST 5 cut(s) 86, 219, 227, 583, 702
SfaNI GCATC 4 cut(s) 409, 470, 480, 490
SinI GGWCC 2 cut(s) 55, 72
SmlI CTYRAG 2 cut(s) 452, 683
SmoI CTYRAG 2 cut(s) 452, 683
Sse9I AATT 9 cut(s) 151, 304, 327, 353, 381, 552, 599, 649, 722
SsiI CCGC 2 cut(s) 36, 52
StyI CCWWGG 2 cut(s) 244, 289
TaaI ACNGT 3 cut(s) 138, 403, 607
TaiI ACGT 2 cut(s) 227, 583
TasI AATT 9 cut(s) 151, 304, 327, 353, 381, 552, 599, 649, 722
TatI WGTACW 1 cut(s) 691
TfiI GAWTC 3 cut(s) 376, 572, 728
Tru1I TTAA 4 cut(s) 63, 345, 356, 612
Tru9I TTAA 4 cut(s) 63, 345, 356, 612
TspDTI ATGAA 4 cut(s) 320, 339, 585, 653
VpaK11BI GGWCC 2 cut(s) 55, 72
XapI RAATTY 5 cut(s) 151, 304, 327, 599, 649
XceI RCATGY 1 cut(s) 372
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 558
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 660
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.