Rh1AG064000
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000197
Physical Location & Seq
Reverse (-)
10683737 .. 10685790
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG064000.1

Sequence Viewer

Length: 660 bp
ATGAATGAGTATCGTTTGCCTGATAACTGCAAATTGCTCAAGGGCGACTTTGTTTTCTATCACTTGAAGATTAAATCAGATAAGAAGGATTCTTCGGTCAGTAATGAAGGAGAACCCCGTAGCGCGAGTGTGTCTAATTGCAAAAATCAAGCTGCTGATGAAATGAATCAAGAGGCACACGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCAGGATGACCGCTGCTCTTCAGCACTGCGGTCACGGGCATCCCACGAGCTGGAAGGTGTTCTGCAAACCAATAGCACTAATGATGATTGTAGTGAATTGCAATCACCATTTGGAGATGGTGATTCTTGTCTTCTAGACGGGAATGAAGTTTCGACCTGTGATGAAGATGAGACAGTGTGTGATGTGTTTCCACAGCTAATGGATAGGCCTTTGAAGGAATTGAAGATGAAGCTTTTCAAATATGAGATATCAATGCTTGTACTAACTGCTCCTGGAGGAAGTGGGAAAACTACACTGGCAACAAAGTTTTGTCAAGATGGAGAAGTCAGAGATAAATTCAAGAACAATATCTTCTTTGTAACTGTTTCCAACAAGCCCAACTTAGACCTTGTTGTACAAGAGAACGCAAAGGTTACCAGATATCCGATTTCCAAAATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

219

Amino Acids

24.61

Weight (kDa)

5.12

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 142 - 204 5e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 1 cut(s) 125
AciI CCGC 2 cut(s) 226, 244
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 2 cut(s) 477, 612
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 5 cut(s) 67, 430, 439, 454, 556
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 4 cut(s) 152, 265, 412, 448
AluI AGCT 4 cut(s) 152, 265, 412, 448
Alw26I GTCTC 1 cut(s) 380
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 152, 228
ApoI RAATTY 1 cut(s) 551
Asp700I GAANNNNTTC 2 cut(s) 273, 449
AspLEI GCGC 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 312, 347
AxyI CCTNAGG 1 cut(s) 216
BauI CACGAG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 139, 215
BccI CCATC 3 cut(s) 210, 326, 527
BciT130I CCWGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 1 cut(s) 350
BisI GCNGC 2 cut(s) 153, 229
BlsI GCNGC 2 cut(s) 154, 230
Bme1390I CCNGG 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 510
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 516
Bse21I CCTNAGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 489
BseGI GGATG 2 cut(s) 226, 254
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 224, 230
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 139, 215
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 380
BsnI GGCC 1 cut(s) 424
Bsp1407I TGTACA 1 cut(s) 610
BspACI CCGC 2 cut(s) 226, 244
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 2 cut(s) 223, 229
BspFNI CGCG 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 610
BsrI ACTGG 1 cut(s) 516
BssSI CACGAG 1 cut(s) 260
Bst2BI CACGAG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 391, 580
Bst6I CTCTTC 2 cut(s) 178, 238
BstAUI TGTACA 1 cut(s) 610
BstDEI CTNAG 3 cut(s) 210, 216, 598
BstEII GGTNACC 1 cut(s) 628
BstF5I GGATG 2 cut(s) 226, 254
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 489
BstPI GGTNACC 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 487
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 139, 215
BstV2I GAAGAC 1 cut(s) 338
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 226, 254
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 3 cut(s) 239, 396, 509
CfoI GCGC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 476, 611
CviJI RGCY 7 cut(s) 152, 214, 265, 412, 424, 448, 592
CviKI_1 RGCY 7 cut(s) 152, 214, 265, 412, 424, 448, 592
CviQI GTAC 2 cut(s) 476, 611
DdeI CTNAG 3 cut(s) 210, 216, 598
Eam1104I CTCTTC 2 cut(s) 178, 238
EarI CTCTTC 2 cut(s) 178, 238
Eco147I AGGCCT 1 cut(s) 424
Eco32I GATATC 2 cut(s) 465, 638
Eco57I CTGAAG 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 628
EcoO65I GGTNACC 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 487
EcoRV GATATC 2 cut(s) 465, 638
FaiI YATR 1 cut(s) 459
FalI AAGNNNNNCTT 4 cut(s) 32, 64, 581, 613
Fnu4HI GCNGC 2 cut(s) 153, 229
FokI GGATG 2 cut(s) 233, 241
Fsp4HI GCNGC 2 cut(s) 153, 229
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 124
GluI GCNGC 2 cut(s) 153, 229
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 424
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 3 cut(s) 89, 166, 338
HphI GGTGA 2 cut(s) 312, 347
Hpy188I TCNGA 3 cut(s) 79, 545, 642
Hpy188III TCNNGA 5 cut(s) 170, 218, 350, 530, 556
HpyAV CCTTC 4 cut(s) 79, 101, 263, 424
HpyCH4III ACNGT 2 cut(s) 391, 580
HpyCH4V TGCA 4 cut(s) 30, 141, 280, 316
HpyF3I CTNAG 3 cut(s) 210, 216, 598
HspAI GCGC 1 cut(s) 123
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 490
LpnPI CCDG 8 cut(s) 33, 203, 251, 385, 474, 497, 501, 646
Lsp1109I GCAGC 2 cut(s) 139, 215
LweI GCATC 1 cut(s) 263
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 3 cut(s) 246, 574, 628
MboII GAAGA 8 cut(s) 79, 84, 195, 225, 338, 392, 451, 559
MluCI AATT 5 cut(s) 32, 136, 311, 434, 551
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 5 cut(s) 166, 181, 219, 225, 485
MroXI GAANNNNTTC 2 cut(s) 273, 449
MseI TTAA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 246
PceI AGGCCT 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 238
PdmI GAANNNNTTC 2 cut(s) 273, 449
PfeI GAWTC 3 cut(s) 89, 166, 338
PflMI CCANNNNNTGG 1 cut(s) 265
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 2 cut(s) 154, 230
Psp6I CCWGG 1 cut(s) 487
PspEI GGTNACC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 487
RsaI GTAC 2 cut(s) 477, 612
RsaNI GTAC 2 cut(s) 476, 611
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 153, 229
ScrFI CCNGG 1 cut(s) 489
SetI ASST 9 cut(s) 154, 211, 267, 274, 374, 414, 450, 606, 630
SfaNI GCATC 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 5 cut(s) 32, 136, 311, 434, 551
SseBI AGGCCT 1 cut(s) 424
SsiI CCGC 2 cut(s) 226, 244
SspMI CTAG 1 cut(s) 350
StuI AGGCCT 1 cut(s) 424
StyD4I CCNGG 1 cut(s) 487
TaaI ACNGT 2 cut(s) 391, 580
TaqI TCGA 1 cut(s) 368
TaqII GACCGA 1 cut(s) 85
TasI AATT 5 cut(s) 32, 136, 311, 434, 551
TatI WGTACW 2 cut(s) 475, 610
TfiI GAWTC 3 cut(s) 89, 166, 338
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 3 cut(s) 246, 396, 516
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 2 cut(s) 152, 228
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 7 cut(s) 17, 120, 174, 179, 375, 393, 458
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 3 cut(s) 246, 396, 516
Van91I CCANNNNNTGG 1 cut(s) 265
XapI RAATTY 1 cut(s) 551
XbaI TCTAGA 1 cut(s) 349
XmnI GAANNNNTTC 2 cut(s) 273, 449
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.