Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000197

Physical Location & Seq

Genomic Coordinates Reverse (-)

15168877 .. 15170587

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18021.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCTGGGAATTATTGAGCACAAGACCCATATTTCCAGCAGTAGATCACAACCACCCCAAAGTCCTATAAAAAGAGGCACTCTCATTCATGGAGGAGGACACAGACCCTTATTCTCCATAAGAAAAAGCTCCACATTCACTTCTTTAACTTCATCACCAAAGGAAGAGTTCGACGACCCACCGGTGTTGAAGCCGGAAGTCTTTTCTCTTGCTACGCCTCATCAACAGATCTCAATTCAGTCCCTCAAGCTGTCCTCACCTTCCAGCAGAGTAGGCAGACCCCATGGTCAAGAGATGAAGAGGAACTTTGTCCTATGTCGCTTGAAGAAAAAAGATGAGAGGACTAATATTGGAGCCTGTGATGAGGGTGAACCTAGGACTCACGACCCATCTGATTTTGAAAATGTACTAGCATTAGAGGAAAATACTCAGCCCGAAGAAATTTTGGGTTCGCTCTTTCCCTCACGGGCAGTACCTGAGTCACCTCAATCAGAGGATTATTTATCCTCTACGCTGAGAGGCAATTTTCTCTGCAAGCAAATGCTGGTAGTACTAACCATATCGAGACAGAAGATGATTGGTGTGATGATGACTCGTCCGAAGAGAGAACGTACAGTCTCTTCACTGATATTCTCCCGTAAAAGCTTGAATCTTTTGGTGAAATCATTTGAGTTCATTTTGCCACTTTTTCTTCAGGATATTAGTTTACCTGTTGCTCCCAGCCTGTCTTCCGATAAATCTTGGGACTTTGATCGTGTTCAATCACTGACAGATGAAATTGAGCATGGACCGAGTCCCATTTTGTTACAGGAACCACAGGCTTCCTATAGCCGTGATAAACGTTCTATTCATTGTATCACCTTAGCCACTGATGTGAACTATATAAACAAAAGCAGGCGCTGGCAGAGATCTAATACTACTGAATGGCACAATGGGATGACTGAGGCTGCTCAATCATTTGCCTATCGGGGGGAGTGTGCTACAAGCACAAGAAAAACATTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

336

Amino Acids

37.84

Weight (kDa)

9.11

Isoelectric Point (pI)

79.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica	MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica	Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis	pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis	RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata	RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora	Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii	Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa	Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha	Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana	Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	285
AclI	AACGTT	1 cut(s)	841
AcsI	RAATTY	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	677
AfaI	GTAC	4 cut(s)	408, 474, 552, 613
AfiI	CCNNNNNNNGG	1 cut(s)	969
AgeI	ACCGGT	1 cut(s)	181
AgsI	TTSAA	5 cut(s)	190, 325, 401, 649, 761
AleI	CACNNNNGTG	1 cut(s)	872
AluBI	AGCT	3 cut(s)	129, 250, 645
AluI	AGCT	3 cut(s)	129, 250, 645
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	559, 622
AlwNI	CAGNNNCTG	2 cut(s)	476, 900
ApeKI	GCWGC	1 cut(s)	947
ApoI	RAATTY	1 cut(s)	441
AsiGI	ACCGGT	1 cut(s)	181
AspA2I	CCTAGG	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	6 cut(s)	147, 249, 380, 474, 670, 850
AvaII	GGWCC	1 cut(s)	788
AvrII	CCTAGG	1 cut(s)	374
BarI	GAAGNNNNNNTAC	2 cut(s)	604, 636
BbsI	GAAGAC	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	934
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	816
BcoDI	GTCTC	2 cut(s)	559, 622
BfaI	CTAG	2 cut(s)	375, 410
BfmI	CTRYAG	1 cut(s)	826
BfoI	RGCGCY	1 cut(s)	901
BglII	AGATCT	2 cut(s)	228, 908
BisI	GCNGC	1 cut(s)	948
BlnI	CCTAGG	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	949
BmcAI	AGTACT	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	2 cut(s)	355, 813
BpiI	GAAGAC	1 cut(s)	720
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
Bpu10I	CCTNAGC	1 cut(s)	862
BpuEI	CTTGAG	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	283, 374
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	969
Bse118I	RCCGGY	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	283, 374
BseGI	GGATG	1 cut(s)	942
BseLI	CCNNNNNNNGG	1 cut(s)	969
BseMII	CTCAG	4 cut(s)	443, 468, 506, 933
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	934
BseYI	CCCAGC	2 cut(s)	4, 719
BshTI	ACCGGT	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	182, 194
BslFI	GGGAC	3 cut(s)	226, 758, 780
BslI	CCNNNNNNNGG	1 cut(s)	969
BsmAI	GTCTC	2 cut(s)	559, 622
BsmFI	GGGAC	3 cut(s)	226, 758, 780
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	44, 228, 751, 908
Bsp19I	CCATGG	1 cut(s)	283
BspCNI	CTCAG	4 cut(s)	442, 469, 507, 934
BspLI	GGNNCC	2 cut(s)	355, 813
BsrFI	RCCGGY	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	283, 374
BssMI	GATC	4 cut(s)	44, 228, 751, 908
BssT1I	CCWWGG	2 cut(s)	283, 374
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	4 cut(s)	159, 293, 596, 625
BstC8I	GCNNGC	3 cut(s)	536, 896, 902
BstDEI	CTNAG	5 cut(s)	429, 477, 515, 862, 942
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	942
BstH2I	RGCGCY	1 cut(s)	901
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	4 cut(s)	47, 231, 754, 911
BstMAI	GTCTC	2 cut(s)	559, 622
BstMBI	GATC	4 cut(s)	44, 228, 751, 908
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	826
BstV1I	GCAGC	1 cut(s)	934
BstV2I	GAAGAC	1 cut(s)	720
BstX2I	RGATCY	2 cut(s)	228, 908
BstYI	RGATCY	2 cut(s)	228, 908
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	942
BtsIMutI	CAGTG	3 cut(s)	623, 764, 867
Cac8I	GCNNGC	3 cut(s)	536, 896, 902
CaiI	CAGNNNCTG	2 cut(s)	476, 900
CfoI	GCGC	1 cut(s)	900
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	788
Csp6I	GTAC	4 cut(s)	407, 473, 551, 612
CspAI	ACCGGT	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviAII	CATG	3 cut(s)	89, 284, 785
CviQI	GTAC	4 cut(s)	407, 473, 551, 612
DdeI	CTNAG	5 cut(s)	429, 477, 515, 862, 942
DpnI	GATC	4 cut(s)	46, 230, 753, 910
DpnII	GATC	4 cut(s)	44, 228, 751, 908
DrdI	GACNNNNNNGTC	1 cut(s)	285
DseDI	GACNNNNNNGTC	1 cut(s)	285
Eam1104I	CTCTTC	4 cut(s)	159, 293, 596, 625
EarI	CTCTTC	4 cut(s)	159, 293, 596, 625
Eco130I	CCWWGG	2 cut(s)	283, 374
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	1 cut(s)	677
EcoT14I	CCWWGG	2 cut(s)	283, 374
ErhI	CCWWGG	2 cut(s)	283, 374
FaeI	CATG	3 cut(s)	92, 287, 788
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	3 cut(s)	226, 758, 780
FatI	CATG	3 cut(s)	88, 283, 784
Fnu4HI	GCNGC	1 cut(s)	948
FokI	GGATG	1 cut(s)	949
Fsp4HI	GCNGC	1 cut(s)	948
FspBI	CTAG	2 cut(s)	375, 410
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	1 cut(s)	948
GsaI	CCCAGC	2 cut(s)	8, 723
HaeII	RGCGCY	1 cut(s)	901
HapII	CCGG	2 cut(s)	182, 194
HhaI	GCGC	1 cut(s)	900
Hin1II	CATG	3 cut(s)	92, 287, 788
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	5 cut(s)	379, 479, 592, 649, 793
HpaII	CCGG	2 cut(s)	182, 194
HphI	GGTGA	6 cut(s)	147, 249, 380, 474, 670, 850
Hpy166II	GTNNAC	3 cut(s)	371, 707, 877
Hpy188I	TCNGA	4 cut(s)	394, 493, 600, 733
Hpy188III	TCNNGA	4 cut(s)	290, 383, 564, 695
Hpy8I	GTNNAC	3 cut(s)	371, 707, 877
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	2 cut(s)	610, 841
HpyCH4V	TGCA	1 cut(s)	534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	5 cut(s)	429, 477, 515, 862, 942
HpySE526I	ACGT	2 cut(s)	610, 841
Hsp92II	CATG	3 cut(s)	92, 287, 788
HspAI	GCGC	1 cut(s)	898
Kzo9I	GATC	4 cut(s)	44, 228, 751, 908
LmnI	GCTCC	3 cut(s)	134, 353, 721
Lsp1109I	GCAGC	1 cut(s)	934
MaeI	CTAG	2 cut(s)	375, 410
MaeII	ACGT	2 cut(s)	610, 841
MaeIII	GTNAC	2 cut(s)	480, 804
MalI	GATC	4 cut(s)	46, 230, 753, 910
MboI	GATC	4 cut(s)	44, 228, 751, 908
MboII	GAAGA	9 cut(s)	176, 310, 337, 449, 583, 612, 613, 683, 720
MflI	RGATCY	2 cut(s)	228, 908
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	5 cut(s)	9, 234, 441, 523, 777
MlyI	GAGTC	4 cut(s)	373, 488, 586, 802
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	872
MspI	CCGG	2 cut(s)	182, 194
MwoI	GCNNNNNNNGC	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	4 cut(s)	44, 228, 751, 908
NlaIII	CATG	3 cut(s)	92, 287, 788
NlaIV	GGNNCC	2 cut(s)	355, 813
NmuCI	GTSAC	1 cut(s)	480
OliI	CACNNNNGTG	1 cut(s)	872
PfeI	GAWTC	1 cut(s)	649
PflFI	GACNNNGTC	1 cut(s)	792
PinAI	ACCGGT	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	949
PleI	GAGTC	4 cut(s)	373, 487, 586, 801
PpsI	GAGTC	4 cut(s)	373, 487, 586, 801
Psp1406I	AACGTT	1 cut(s)	841
PspFI	CCCAGC	2 cut(s)	4, 719
PspN4I	GGNNCC	2 cut(s)	355, 813
PspPI	GGNCC	1 cut(s)	788
PstNI	CAGNNNCTG	2 cut(s)	476, 900
PsuI	RGATCY	2 cut(s)	228, 908
PsyI	GACNNNGTC	1 cut(s)	792
RsaI	GTAC	4 cut(s)	408, 474, 552, 613
RsaNI	GTAC	4 cut(s)	407, 473, 551, 612
RseI	CAYNNNNRTG	1 cut(s)	872
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	1 cut(s)	948
Sau3AI	GATC	4 cut(s)	44, 228, 751, 908
Sau96I	GGNCC	1 cut(s)	788
ScaI	AGTACT	1 cut(s)	552
SchI	GAGTC	4 cut(s)	373, 488, 586, 802
SduI	GDGCHC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	826
SgrAI	CRCCGGYG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	788
SmiMI	CAYNNNNRTG	1 cut(s)	872
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	5 cut(s)	9, 234, 441, 523, 777
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	2 cut(s)	375, 410
StyI	CCWWGG	2 cut(s)	283, 374
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	2 cut(s)	613, 844
TaqI	TCGA	2 cut(s)	171, 563
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	5 cut(s)	9, 234, 441, 523, 777
TatI	WGTACW	2 cut(s)	406, 550
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	3 cut(s)	630, 771, 874
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	1 cut(s)	947
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	6 cut(s)	77, 141, 311, 664, 789, 839
TspRI	CASTG	3 cut(s)	630, 771, 874
Tth111I	GACNNNGTC	1 cut(s)	792
VpaK11BI	GGWCC	1 cut(s)	788
XapI	RAATTY	1 cut(s)	441
XmaJI	CCTAGG	1 cut(s)	374
XspI	CTAG	2 cut(s)	375, 410
ZrmI	AGTACT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.