Rmu_co8135790.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8135790.1
Physical Location & Seq
Reverse (-)
2 .. 515
514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8135790.1_g000001.1.cds

Sequence Viewer

Length: 413 bp
atggaagtttttggtaggcaaagtattccagaggatttgcagatcacattgcaggaaaatactcggcggcctgaagaaatttttgatacactctttccctctcctgagtcacctcagttacataatttctcctccatgttgggagacaattttctgcatgcaaatgccgttagtgatgtccaccttgagttgcaatatggatttcaacctgatgattcggaagatgaggaattcaacgtgaactcttatttggttgacgatggtgattactccttggaagaaacatcacgcactactcggctcaaccactcaagcgagccaaagtcggtggttaaggtgtatgatgagggtatacatcaacaggtaaagaagtactttccattggctattgaagaagcagttcagttggactg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.76

Weight (kDa)

4.31

Isoelectric Point (pI)

71.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 352
AciI CCGC 1 cut(s) 67
AcsI RAATTY 2 cut(s) 78, 230
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 374
AgsI TTSAA 3 cut(s) 206, 235, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 78, 230
Asp700I GAANNNNTTC 1 cut(s) 399
AsuHPI GGTGA 2 cut(s) 102, 275
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BmcAI AGTACT 1 cut(s) 374
BpuEI CTTGAG 2 cut(s) 206, 295
BsaJI CCNNGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 96, 128
BseRI GAGGAG 1 cut(s) 121
BshFI GGCC 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 97, 127
BsrDI GCAATG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 1 cut(s) 42
BssNAI GTATAC 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 159, 317
BstDEI CTNAG 2 cut(s) 105, 114
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 161
BstZ17I GTATAC 1 cut(s) 353
BsuRI GGCC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 159, 317
Csp6I GTAC 1 cut(s) 373
CspCI CAANNNNNGTGG 2 cut(s) 309, 344
CviAII CATG 2 cut(s) 136, 158
CviJI RGCY 4 cut(s) 70, 301, 319, 386
CviKI_1 RGCY 4 cut(s) 70, 301, 319, 386
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 105, 114
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 139, 161
FaiI YATR 6 cut(s) 123, 137, 159, 198, 342, 353
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FatI CATG 2 cut(s) 135, 157
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 70
Hin1II CATG 2 cut(s) 139, 161
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 107, 215
HphI GGTGA 2 cut(s) 102, 275
Hpy166II GTNNAC 4 cut(s) 181, 241, 256, 353
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 29, 104
Hpy8I GTNNAC 4 cut(s) 181, 241, 256, 353
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 5 cut(s) 40, 52, 157, 161, 193
HpyF3I CTNAG 2 cut(s) 105, 114
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 139, 161
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 6 cut(s) 38, 42, 84, 117, 222, 347
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 108, 117
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 4 cut(s) 86, 233, 290, 404
MluCI AATT 4 cut(s) 78, 124, 148, 230
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 6 cut(s) 25, 109, 123, 142, 220, 340
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 162
NdeII GATC 1 cut(s) 42
NlaIII CATG 2 cut(s) 139, 161
NmeAIII GCCGAG 2 cut(s) 43, 277
NmuCI GTSAC 1 cut(s) 108
NspI RCATGY 1 cut(s) 161
PaeI GCATGC 1 cut(s) 161
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 1 cut(s) 42
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 1 cut(s) 116
SetI ASST 6 cut(s) 115, 186, 211, 240, 339, 366
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 2 cut(s) 185, 310
SmoI CTYRAG 2 cut(s) 185, 310
SphI GCATGC 1 cut(s) 161
Sse9I AATT 4 cut(s) 78, 124, 148, 230
SsiI CCGC 1 cut(s) 67
StyI CCWWGG 1 cut(s) 273
TaiI ACGT 1 cut(s) 240
TasI AATT 4 cut(s) 78, 124, 148, 230
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 108
XapI RAATTY 2 cut(s) 78, 230
XceI RCATGY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 399
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.