pycom01g11710
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000197
Physical Location & Seq
Reverse (-)
12754005 .. 12755217
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11710.2

Sequence Viewer

Length: 774 bp
ATGCTTCTGGAGTATTCTGAAGTGAGTTATAAGTTACTTTGCAGTTGCACCTTCATCTCAGTTCAAACTTCACTCGCTCAAACACAGAGAGAAAAGAAACATATGGGAACACAGGGAAGCAACAGAAAAACAGGAGGGGTTTCGGACGCAGTAGGGGTCAGATTCAACCCCACTCCGGAGGAAATGGTGGATCATTACTTGAAGCTCAAGAAACAGGACAAGGGTTTCAAATCTGATCACATCGCTGAATTCGACGTCTGCAACTTCGACCCTTGGGATTTGGCTGCTCGCATTCCATCCGACGATATGGTGTGGTACTTCTTCAGCCCTAAGGAGTACAAGTATATCAATAGCACCCGTTACAACCGAACCACACCAGGAGGTCAGTGGAAAATGGCAGGCAAGGAGCGTCCGGTCAAGGCTCGGCTGTCCAAAGATGTCATTGGGAAGAAGAGGACCTTGACATTCTACCAACGTTGTGGGCCTCAACGCAAACTGAAAAAAACCAACTGGGTCAGGCACGAGTACAGTCTCATTGATAGTGAAGCAGCCATCTCTAATCCTAAGCTGCGTCAGAAGGATTTTGTTCTCAATCGCATGAAGAAAGAATTTGATGAAGAGGATACCTCAATTGATGAAGTTGAACTTGGCAGCTACAGTGCGTCTAACGTTGAAGATCATGCTGCAGCTGTTGTGACTCCAAAGGTGAGAATGAGAGTCGTCTTGTTTTTGAGCATTTTTCTTATGGATTATGCGAAATTTATCCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

258

Amino Acids

29.71

Weight (kDa)

9.24

Isoelectric Point (pI)

28.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AatII GACGTC 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 175
AclI AACGTT 2 cut(s) 475, 669
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 3 cut(s) 248, 608, 758
AcuI CTGAAG 2 cut(s) 39, 307
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 3 cut(s) 317, 338, 527
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 6 cut(s) 65, 166, 202, 229, 644, 674
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
AluBI AGCT 4 cut(s) 205, 568, 654, 689
AluI AGCT 4 cut(s) 205, 568, 654, 689
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 1 cut(s) 198
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 6 cut(s) 284, 548, 568, 651, 683, 686
ApoI RAATTY 3 cut(s) 248, 608, 758
AspS9I GGNCC 2 cut(s) 456, 482
AsuHPI GGTGA 1 cut(s) 718
AvaII GGWCC 1 cut(s) 456
AxyI CCTNAGG 1 cut(s) 330
BauI CACGAG 1 cut(s) 521
BbvI GCAGC 6 cut(s) 271, 555, 560, 663, 670, 698
BccI CCATC 2 cut(s) 304, 560
BciT130I CCWGG 1 cut(s) 378
BciVI GTATCC 1 cut(s) 616
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 536
BfmI CTRYAG 2 cut(s) 655, 684
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 6 cut(s) 285, 549, 569, 652, 684, 687
BlsI GCNGC 6 cut(s) 286, 550, 570, 653, 685, 688
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 456
BmgT120I GGNCC 2 cut(s) 456, 482
BmrFI CCNGG 1 cut(s) 378
BmrI ACTGGG 1 cut(s) 520
BmuI ACTGGG 1 cut(s) 520
BplI GAGNNNNNCTC 2 cut(s) 611, 643
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 2 cut(s) 175, 412
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 515
Bse21I CCTNAGG 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 175
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 515
BseXI GCAGC 6 cut(s) 271, 555, 560, 663, 670, 698
BshFI GGCC 1 cut(s) 484
BsiSI CCGG 2 cut(s) 176, 413
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 291
BsnI GGCC 1 cut(s) 484
Bsp13I TCCGGA 1 cut(s) 175
Bsp143I GATC 3 cut(s) 190, 235, 676
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 1 cut(s) 71
BspEI TCCGGA 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 515
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 3 cut(s) 190, 235, 676
BssNI GRCGYC 1 cut(s) 255
BssSI CACGAG 1 cut(s) 521
BssT1I CCWWGG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 521
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 530, 659
Bst6I CTCTTC 2 cut(s) 446, 612
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 289, 400
BstDEI CTNAG 3 cut(s) 58, 330, 564
BstF5I GGATG 1 cut(s) 296
BstKTI GATC 3 cut(s) 193, 238, 679
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 190, 235, 676
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 2 cut(s) 655, 684
BstV1I GCAGC 6 cut(s) 271, 555, 560, 663, 670, 698
BstXI CCANNNNNNTGG 1 cut(s) 479
Bsu36I CCTNAGG 1 cut(s) 330
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 1 cut(s) 484
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 296
BtsIMutI CAGTG 2 cut(s) 392, 664
Cac8I GCNNGC 2 cut(s) 289, 400
Cfr13I GGNCC 2 cut(s) 456, 482
CseI GACGC 4 cut(s) 155, 398, 560, 651
Csp6I GTAC 3 cut(s) 316, 337, 526
CviAII CATG 2 cut(s) 598, 680
CviQI GTAC 3 cut(s) 316, 337, 526
DdeI CTNAG 3 cut(s) 58, 330, 564
DpnI GATC 3 cut(s) 192, 237, 678
DpnII GATC 3 cut(s) 190, 235, 676
Eam1104I CTCTTC 2 cut(s) 446, 612
EarI CTCTTC 2 cut(s) 446, 612
Eco130I CCWWGG 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 456
Eco57I CTGAAG 2 cut(s) 39, 307
Eco81I CCTNAGG 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 2 cut(s) 601, 683
FaiI YATR 9 cut(s) 30, 102, 104, 308, 345, 599, 681, 746, 753
FalI AAGNNNNNCTT 4 cut(s) 443, 475, 630, 662
FatI CATG 2 cut(s) 597, 679
FauNDI CATATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 6 cut(s) 285, 549, 569, 652, 684, 687
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 6 cut(s) 285, 549, 569, 652, 684, 687
GluI GCNGC 6 cut(s) 285, 549, 569, 652, 684, 687
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 484
HapII CCGG 2 cut(s) 176, 413
HgaI GACGC 4 cut(s) 155, 398, 560, 651
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 2 cut(s) 601, 683
HinfI GANTC 3 cut(s) 162, 697, 717
HpaII CCGG 2 cut(s) 176, 413
HphI GGTGA 1 cut(s) 718
Hpy188I TCNGA 6 cut(s) 19, 145, 161, 235, 301, 576
Hpy188III TCNNGA 3 cut(s) 8, 176, 208
Hpy99I CGWCG 2 cut(s) 257, 305
HpyAV CCTTC 2 cut(s) 61, 571
HpyCH4III ACNGT 2 cut(s) 530, 659
HpyCH4IV ACGT 3 cut(s) 255, 475, 669
HpyCH4V TGCA 4 cut(s) 42, 48, 261, 686
HpyF3I CTNAG 3 cut(s) 58, 330, 564
HpySE526I ACGT 3 cut(s) 255, 475, 669
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 2 cut(s) 601, 683
Kpn2I TCCGGA 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 190, 235, 676
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 6 cut(s) 271, 555, 560, 663, 670, 698
MaeII ACGT 3 cut(s) 255, 475, 669
MaeIII GTNAC 3 cut(s) 33, 359, 694
MalI GATC 3 cut(s) 192, 237, 678
MboI GATC 3 cut(s) 190, 235, 676
MboII GAAGA 6 cut(s) 313, 460, 463, 613, 629, 686
MfeI CAATTG 1 cut(s) 630
MluCI AATT 4 cut(s) 248, 608, 630, 758
MlyI GAGTC 2 cut(s) 691, 726
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 7 cut(s) 128, 172, 374, 447, 495, 613, 637
MroI TCCGGA 1 cut(s) 175
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 2 cut(s) 176, 413
MspR9I CCNGG 1 cut(s) 378
MunI CAATTG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 291
MvaI CCWGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 102
NdeII GATC 3 cut(s) 190, 235, 676
NlaIII CATG 2 cut(s) 601, 683
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 694
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 6 cut(s) 286, 550, 570, 653, 685, 688
PleI GAGTC 2 cut(s) 691, 725
PpsI GAGTC 2 cut(s) 691, 725
PpuMI RGGWCCY 1 cut(s) 456
PsiI TTATAA 1 cut(s) 30
Psp1406I AACGTT 2 cut(s) 475, 669
Psp5II RGGWCCY 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspPI GGNCC 2 cut(s) 456, 482
PspPPI RGGWCCY 1 cut(s) 456
PstI CTGCAG 1 cut(s) 688
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 3 cut(s) 317, 338, 527
RsaNI GTAC 3 cut(s) 316, 337, 526
SatI GCNGC 6 cut(s) 285, 549, 569, 652, 684, 687
Sau3AI GATC 3 cut(s) 190, 235, 676
Sau96I GGNCC 2 cut(s) 456, 482
SchI GAGTC 2 cut(s) 691, 726
ScrFI CCNGG 1 cut(s) 378
SfcI CTRYAG 2 cut(s) 655, 684
SinI GGWCC 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 4 cut(s) 248, 608, 630, 758
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 530, 659
TaiI ACGT 3 cut(s) 258, 478, 672
TaqI TCGA 2 cut(s) 252, 267
TasI AATT 4 cut(s) 248, 608, 630, 758
TatI WGTACW 2 cut(s) 336, 525
TfiI GAWTC 1 cut(s) 162
TscAI CASTG 2 cut(s) 392, 664
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 6 cut(s) 284, 548, 568, 651, 683, 686
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 4 cut(s) 43, 614, 630, 651
TspRI CASTG 2 cut(s) 392, 664
VpaK11BI GGWCC 1 cut(s) 456
XapI RAATTY 3 cut(s) 248, 608, 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.