RLG00000027713
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
14265712 .. 14312369
46658 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027713

Sequence Viewer

Length: 774 bp
ATGAGCAGAGAGAACACGACGCCGCTTTCAGTGCCCATAGGCTACAGGTTCCATCCCACCGAAGAGGAGCTTGTGAACCACTATTTGAAGAAGAAGATTCATGGTGGAGATGATTCCGAAATCAACCAAATCATCCCTGAAATCGACCTCTGCAAATACGAGCCGGCTGAGCTCCCTGCTTTGTTGGGGACTGAAACAGAGGCTCATGACATGGAGTGGTTCTTCTTCACCAGAAAGGCTTACAAGTACAACAAAAGCTCTCGCTCGAAGCGGAGCACGAACAAGGGGTACTGGAAAATCACAGGCCGGGAGCGTGGGATTAAGGCTCGACGATCCAAAGCTGTGATTGCGAAGAAGAGGACATTGACTTTTTACCAGGGGCGTGTGCCGAAATCGAAGAAGACCAGCTGGGTCATTCATGAGTACTATCTTCCTGGAGATGGAGTTGCTTCGTATCCGAAGCAGGCTCAGGGAAATGAGGAGTTGCTACTCCATCAACCTCAACCTCTGGATGACTGCTGCTCCTCAGTACTGCGGTCACCGGTGTCCCAAGAGTTGGAAGCTGTTCTGCAAACCAACGGCACTGATGATGATTGTAATGAGTTGCAATTATCATTTGGAGATAGTGATTCCTGTGTTCAAGATGGGAATGAAGTTTCAACCTGTGATGAATGTGAGACTGTGTATGATGTGTTTCCACAGGTGAGAATGAAACATGCTTTGTTGTTGTTAAACATTTCGACTATAAATCCCAAGACCTATAGCAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

258

Amino Acids

29.3

Weight (kDa)

6.4

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 144 7.5e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 556
AciI CCGC 3 cut(s) 23, 271, 535
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 1 cut(s) 768
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 4 cut(s) 248, 290, 425, 531
AfiI CCNNNNNNNGG 2 cut(s) 440, 556
AgeI ACCGGT 1 cut(s) 541
AgsI TTSAA 3 cut(s) 88, 641, 660
AjnI CCWGG 2 cut(s) 375, 433
AluBI AGCT 6 cut(s) 70, 172, 258, 341, 408, 563
AluI AGCT 6 cut(s) 70, 172, 258, 341, 408, 563
Alw21I GWGCWC 2 cut(s) 174, 278
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 1 cut(s) 327
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 519
ApoI RAATTY 1 cut(s) 768
AsiGI ACCGGT 1 cut(s) 541
Asp700I GAANNNNTTC 1 cut(s) 564
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 3 cut(s) 220, 531, 715
BaeGI GKGCMC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 174, 278
BbvI GCAGC 1 cut(s) 506
BccI CCATC 4 cut(s) 60, 434, 501, 638
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 2 cut(s) 377, 435
BciVI GTATCC 1 cut(s) 465
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 671
BfmI CTRYAG 2 cut(s) 43, 760
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 2 cut(s) 23, 520
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 2 cut(s) 24, 521
BmcAI AGTACT 2 cut(s) 425, 531
Bme1390I CCNGG 3 cut(s) 308, 377, 435
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 3 cut(s) 308, 377, 435
BpiI GAAGAC 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 1 cut(s) 541
BsaXI ACNNNNNCTCC 4 cut(s) 429, 459, 506, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 556
Bse118I RCCGGY 2 cut(s) 163, 541
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 2 cut(s) 377, 435
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 3 cut(s) 52, 132, 517
BseLI CCNNNNNNNGG 2 cut(s) 440, 556
BseMII CTCAG 3 cut(s) 159, 482, 540
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 3 cut(s) 80, 494, 514
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 506
BseYI CCCAGC 1 cut(s) 408
BshFI GGCC 1 cut(s) 306
BshTI ACCGGT 1 cut(s) 541
BsiHKAI GWGCWC 2 cut(s) 174, 278
BsiSI CCGG 3 cut(s) 164, 307, 542
BslFI GGGAC 2 cut(s) 202, 532
BslI CCNNNNNNNGG 2 cut(s) 440, 556
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 2 cut(s) 202, 532
BsnI GGCC 1 cut(s) 306
Bsp1286I GDGCHC 3 cut(s) 36, 174, 278
Bsp143I GATC 1 cut(s) 332
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 3 cut(s) 23, 271, 535
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 3 cut(s) 160, 481, 539
BspHI TCATGA 2 cut(s) 205, 418
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 327
BsrFI RCCGGY 2 cut(s) 163, 541
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 2 cut(s) 163, 541
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 1 cut(s) 332
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 377, 435
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 2 cut(s) 57, 350
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 165, 465
BstDEI CTNAG 3 cut(s) 168, 468, 526
BstEII GGTNACC 1 cut(s) 537
BstF5I GGATG 3 cut(s) 52, 132, 517
BstKTI GATC 1 cut(s) 335
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 3 cut(s) 31, 169, 347
BstNI CCWGG 2 cut(s) 377, 435
BstNSI RCATGY 1 cut(s) 719
BstPI GGTNACC 1 cut(s) 537
BstSCI CCNGG 3 cut(s) 306, 375, 433
BstSFI CTRYAG 2 cut(s) 43, 760
BstSLI GKGCMC 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 506
BstV2I GAAGAC 1 cut(s) 407
BsuI GTATCC 1 cut(s) 465
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 3 cut(s) 52, 132, 517
BtsIMutI CAGTG 2 cut(s) 36, 582
Cac8I GCNNGC 2 cut(s) 165, 465
CciI TCATGA 2 cut(s) 205, 418
Cfr10I RCCGGY 2 cut(s) 163, 541
CseI GACGC 1 cut(s) 28
Csp6I GTAC 4 cut(s) 247, 289, 424, 530
CspAI ACCGGT 1 cut(s) 541
CviAII CATG 5 cut(s) 101, 206, 211, 419, 716
CviQI GTAC 4 cut(s) 247, 289, 424, 530
DdeI CTNAG 3 cut(s) 168, 468, 526
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 57, 350
EarI CTCTTC 2 cut(s) 57, 350
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 537
EcoRII CCWGG 2 cut(s) 375, 433
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 5 cut(s) 104, 209, 214, 422, 719
FaiI YATR 9 cut(s) 38, 102, 207, 212, 420, 687, 717, 746, 762
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 2 cut(s) 202, 532
FatI CATG 5 cut(s) 100, 205, 210, 418, 715
Fnu4HI GCNGC 2 cut(s) 23, 520
FokI GGATG 3 cut(s) 39, 119, 524
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 23, 520
GluI GCNGC 2 cut(s) 23, 520
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 1 cut(s) 306
HapII CCGG 3 cut(s) 164, 307, 542
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 5 cut(s) 104, 209, 214, 422, 719
HinfI GANTC 3 cut(s) 97, 113, 629
HpaII CCGG 3 cut(s) 164, 307, 542
HphI GGTGA 3 cut(s) 220, 531, 715
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 118, 459
Hpy188III TCNNGA 4 cut(s) 206, 419, 509, 641
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 22, 333
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4V TGCA 3 cut(s) 153, 571, 607
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 169, 347
HpyF3I CTNAG 3 cut(s) 168, 468, 526
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 5 cut(s) 104, 209, 214, 422, 719
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 332
LmnI GCTCC 5 cut(s) 67, 177, 273, 310, 527
Lsp1109I GCAGC 1 cut(s) 506
MaeIII GTNAC 1 cut(s) 537
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MhlI GDGCHC 3 cut(s) 36, 174, 278
MluCI AATT 2 cut(s) 608, 768
MmeI TCCRAC 1 cut(s) 537
MnlI CCTC 8 cut(s) 58, 158, 193, 351, 472, 510, 516, 535
MroNI GCCGGC 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 3 cut(s) 321, 731, 772
MspA1I CMGCKG 1 cut(s) 408
MspI CCGG 3 cut(s) 164, 307, 542
MspR9I CCNGG 3 cut(s) 308, 377, 435
MvaI CCWGG 2 cut(s) 377, 435
MwoI GCNNNNNNNGC 3 cut(s) 31, 169, 347
NaeI GCCGGC 1 cut(s) 165
NciI CCSGG 1 cut(s) 308
NdeII GATC 1 cut(s) 332
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 5 cut(s) 104, 209, 214, 422, 719
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 537
NspI RCATGY 1 cut(s) 719
PagI TCATGA 2 cut(s) 205, 418
PdiI GCCGGC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 3 cut(s) 97, 113, 629
PflMI CCANNNNNTGG 1 cut(s) 556
PfoI TCCNGGA 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 541
PkrI GCNGC 2 cut(s) 24, 521
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 375, 433
PspEI GGTNACC 1 cut(s) 537
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 2 cut(s) 375, 433
PspN4I GGNNCC 1 cut(s) 50
PsrI GAACNNNNNNTAC 2 cut(s) 272, 304
PvuII CAGCTG 1 cut(s) 408
RsaI GTAC 4 cut(s) 248, 290, 425, 531
RsaNI GTAC 4 cut(s) 247, 289, 424, 530
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 3 cut(s) 321, 731, 772
SatI GCNGC 2 cut(s) 23, 520
Sau3AI GATC 1 cut(s) 332
ScaI AGTACT 2 cut(s) 425, 531
ScrFI CCNGG 3 cut(s) 308, 377, 435
SduI GDGCHC 3 cut(s) 36, 174, 278
SfcI CTRYAG 2 cut(s) 43, 760
SgrAI CRCCGGYG 1 cut(s) 541
Sse9I AATT 2 cut(s) 608, 768
SsiI CCGC 3 cut(s) 23, 271, 535
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 3 cut(s) 306, 375, 433
TaaI ACNGT 1 cut(s) 682
TaqI TCGA 5 cut(s) 144, 266, 328, 395, 740
TasI AATT 2 cut(s) 608, 768
TatI WGTACW 3 cut(s) 246, 423, 529
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 3 cut(s) 97, 113, 629
Tru1I TTAA 3 cut(s) 321, 731, 772
Tru9I TTAA 3 cut(s) 321, 731, 772
TscAI CASTG 2 cut(s) 36, 589
TseFI GTSAC 1 cut(s) 537
TseI GCWGC 1 cut(s) 519
Tsp45I GTSAC 1 cut(s) 537
TspDTI ATGAA 5 cut(s) 89, 407, 666, 684, 725
TspRI CASTG 2 cut(s) 36, 589
Van91I CCANNNNNTGG 1 cut(s) 556
XapI RAATTY 1 cut(s) 768
XceI RCATGY 1 cut(s) 719
XmnI GAANNNNTTC 1 cut(s) 564
ZrmI AGTACT 2 cut(s) 425, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.