Rh1DG294100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
52005171 .. 52005696
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG294100.1

Sequence Viewer

Length: 435 bp
ATGGCAGAGGATTTGCAAATCACATTGCAGGAAAATACTCGGCCTGACTTTCCCTCTCCTGAGTCACCTCAATCACAGGATTATTTCTTCTGCATGATGGGAGACAATATTGTGCGTGTAAATGCCGGCAGTCAATCTGCAATTGGACATGATGATTCGGAAGATGTGGAATTGTTTGTGAACTCATGTTTGGTTGACAATGGTGATTACTCCGTGGAAGAAACATCACGCACTACTCTCCTCAACCACTCAAGCGAGCCAAAGTCGTTGGTTAGGGTGTATGATGAGGGTATACATCAACAGGTAAAGAAGAACTTTCCATTGGTTGTTGAAGAAGCAGTTCAGTTGGACTGCCTAGTGGGATTCAGTATTTATATCTGTAGGAGGATATCAGGACTCTTTATGATGTGCTTGTCACTCACATTTTACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.23

Weight (kDa)

4.34

Isoelectric Point (pI)

73.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 292
AgsI TTSAA 1 cut(s) 332
AjuI GAANNNNNNNTTGG 4 cut(s) 173, 205, 305, 337
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 57, 215
BccI CCATC 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 213
Bse118I RCCGGY 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 213
BseMI GCAATG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 43
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 213
BssNAI GTATAC 1 cut(s) 293
Bst1107I GTATAC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 127, 257
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 379
BstZ17I GTATAC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 43
BtgI CCRYGG 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 127, 257
Cfr10I RCCGGY 1 cut(s) 125
CviAII CATG 3 cut(s) 94, 149, 186
CviJI RGCY 2 cut(s) 43, 259
CviKI_1 RGCY 2 cut(s) 43, 259
DdeI CTNAG 1 cut(s) 60
Eco32I GATATC 1 cut(s) 390
EcoRV GATATC 1 cut(s) 390
FaeI CATG 3 cut(s) 97, 152, 189
FaiI YATR 7 cut(s) 95, 150, 187, 282, 293, 375, 404
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 3 cut(s) 93, 148, 185
FblI GTMKAC 1 cut(s) 292
FspBI CTAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 43
HapII CCGG 1 cut(s) 126
Hin1II CATG 3 cut(s) 97, 152, 189
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 4 cut(s) 62, 155, 363, 396
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 57, 215
Hpy166II GTNNAC 3 cut(s) 181, 196, 293
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 59, 393
Hpy8I GTNNAC 3 cut(s) 181, 196, 293
HpyCH4V TGCA 4 cut(s) 16, 28, 93, 140
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 3 cut(s) 97, 152, 189
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
LpnPI CCDG 7 cut(s) 14, 57, 62, 72, 139, 287, 378
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 63, 414
MboII GAAGA 5 cut(s) 79, 173, 230, 322, 344
MfeI CAATTG 1 cut(s) 141
MluCI AATT 2 cut(s) 141, 170
MlyI GAGTC 2 cut(s) 71, 390
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 5 cut(s) 64, 78, 251, 280, 378
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 1 cut(s) 433
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 141
NaeI GCCGGC 1 cut(s) 127
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 3 cut(s) 97, 152, 189
NmeAIII GCCGAG 1 cut(s) 19
NmuCI GTSAC 2 cut(s) 63, 414
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 155, 363
PleI GAGTC 2 cut(s) 70, 390
PpsI GAGTC 2 cut(s) 70, 390
SaqAI TTAA 1 cut(s) 433
SchI GAGTC 2 cut(s) 71, 390
SetI ASST 2 cut(s) 70, 306
SfcI CTRYAG 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 2 cut(s) 141, 170
SspI AATATT 1 cut(s) 109
SspMI CTAG 1 cut(s) 356
TasI AATT 2 cut(s) 141, 170
TfiI GAWTC 2 cut(s) 155, 363
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TseFI GTSAC 2 cut(s) 63, 414
Tsp45I GTSAC 2 cut(s) 63, 414
TspGWI ACGGA 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.