RLG00000027709
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000197
Physical Location & Seq
Forward (+)
14220273 .. 14224464
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027709

Sequence Viewer

Length: 768 bp
ATGTGGCATGTGAGGAGAGACCAGCTGGTCCTGACGTCATTCACGCGGATGGCGATGACATCAACAAGGGGATTAAACTCACCATTGAGAGAAAGGAGATATCACAACAACAGTTTGAGCAGAGACAAAACGAAGCCGCTTTCAGTGCCGGTAGGCTACAGGTTCCACCCCACCGAAGAGGAGCTTCTGACTCACTATTTGAAGAAGAAAATTCATGGTGGAAATGATTCCGAAATCAACCAAATCATCCCTGAAATAGACCTCTGCAGATACGAGCCGGCTGAGCTTCCTGGCCAGGAGCGTGGGATCAAAGCTCGACGATCTAAAGCTGTGATTGGGAAGAAGAGGACTCTGACATTTTACCATGGCCGTGTGCCGAAATCGAAGAAGAGCAGCTGGGTCATTCATGAGTACTCTCTGCCTGGAAATGAAGTGATTTCATGTCAGAAACAGGCCCAGGCAAACGAAAATGATGAATCGTATTTTCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCAGTCGCCAACATCCCTAGAGCTGGAAGCTGTTCTGCAAACCAATGGCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAAAGATTATCGTCTTCTAGACTGGAATGAAGTTTCAACCTGTGATAAAGATGAGACTATGTATGATGTGTTTTCACTGGTAAGAATGAACATGTTTTTTGTTGTTAAACATCTCGGCTATAAACAGAAATTGCTGATTCTTATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

256

Amino Acids

29.49

Weight (kDa)

8.15

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 50 - 101 2.4e-13 No apical meristem (NAM) protein
NAM PF02365 99 - 140 5.7e-06 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 26
AatII GACGTC 1 cut(s) 38
AccII CGCG 1 cut(s) 46
AciI CCGC 2 cut(s) 46, 137
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 292, 367
AcsI RAATTY 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 550
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 2 cut(s) 202, 654
AjnI CCWGG 4 cut(s) 289, 294, 421, 456
AluBI AGCT 8 cut(s) 25, 184, 286, 314, 329, 396, 550, 557
AluI AGCT 8 cut(s) 25, 184, 286, 314, 329, 396, 550, 557
Alw26I GTCTC 3 cut(s) 12, 117, 665
AlwI GGATC 1 cut(s) 314
AlwNI CAGNNNCTG 1 cut(s) 502
AoxI GGCC 3 cut(s) 292, 367, 453
ApeKI GCWGC 2 cut(s) 393, 513
ApoI RAATTY 1 cut(s) 210
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
Asp700I GAANNNNTTC 2 cut(s) 226, 558
AspS9I GGNCC 2 cut(s) 28, 454
AsuHPI GGTGA 2 cut(s) 72, 597
AvaII GGWCC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 623
BbvCI CCTCAGC 2 cut(s) 495, 520
BbvI GCAGC 2 cut(s) 405, 500
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 354
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 4 cut(s) 291, 296, 423, 458
BcoDI GTCTC 3 cut(s) 12, 117, 665
BfaI CTAG 2 cut(s) 545, 635
BfmI CTRYAG 3 cut(s) 157, 265, 527
BisI GCNGC 3 cut(s) 137, 394, 514
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 3 cut(s) 138, 395, 515
BmcAI AGTACT 1 cut(s) 413
Bme1390I CCNGG 4 cut(s) 291, 296, 423, 458
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 28, 454
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 4 cut(s) 291, 296, 423, 458
BpiI GAAGAC 1 cut(s) 623
Bpu10I CCTNAGC 2 cut(s) 495, 520
Bpu1102I GCTNAGC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 364, 456
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 1 cut(s) 550
Bse118I RCCGGY 2 cut(s) 148, 277
Bse1I ACTGG 2 cut(s) 644, 699
BseBI CCWGG 4 cut(s) 291, 296, 423, 458
BseDI CCNNGG 2 cut(s) 364, 456
BseGI GGATG 4 cut(s) 54, 246, 511, 539
BseLI CCNNNNNNNGG 1 cut(s) 550
BseMII CTCAG 3 cut(s) 273, 509, 534
BseNI ACTGG 2 cut(s) 644, 699
BseRI GAGGAG 3 cut(s) 28, 194, 508
BseXI GCAGC 2 cut(s) 405, 500
BseYI CCCAGC 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 3 cut(s) 294, 369, 455
BsiSI CCGG 2 cut(s) 149, 278
BslI CCNNNNNNNGG 1 cut(s) 550
BsmAI GTCTC 3 cut(s) 12, 117, 665
BsnI GGCC 3 cut(s) 294, 369, 455
Bso31I GGTCTC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 306, 320
Bsp1720I GCTNAGC 1 cut(s) 282
Bsp19I CCATGG 1 cut(s) 364
BspACI CCGC 2 cut(s) 46, 137
BspANI GGCC 3 cut(s) 294, 369, 455
BspCNI CTCAG 3 cut(s) 274, 508, 533
BspFNI CGCG 1 cut(s) 46
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 164
BspMAI CTGCAG 2 cut(s) 269, 531
BspPI GGATC 1 cut(s) 314
BspQI GCTCTTC 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 148, 277
BsrI ACTGG 2 cut(s) 644, 699
BssAI RCCGGY 2 cut(s) 148, 277
BssECI CCNNGG 2 cut(s) 364, 456
BssMI GATC 2 cut(s) 306, 320
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 4 cut(s) 291, 296, 423, 458
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 3 cut(s) 171, 338, 383
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 282, 495, 520
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 4 cut(s) 54, 246, 511, 539
BstFNI CGCG 1 cut(s) 46
BstKTI GATC 2 cut(s) 309, 323
BstMAI GTCTC 3 cut(s) 12, 117, 665
BstMBI GATC 2 cut(s) 306, 320
BstMWI GCNNNNNNNGC 2 cut(s) 145, 283
BstNI CCWGG 4 cut(s) 291, 296, 423, 458
BstNSI RCATGY 2 cut(s) 11, 712
BstSCI CCNGG 4 cut(s) 289, 294, 421, 456
BstSFI CTRYAG 3 cut(s) 157, 265, 527
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 405, 500
BstV2I GAAGAC 1 cut(s) 623
BstXI CCANNNNNNTGG 1 cut(s) 302
BsuRI GGCC 3 cut(s) 294, 369, 455
BtgI CCRYGG 1 cut(s) 364
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 4 cut(s) 54, 246, 511, 539
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 3 cut(s) 150, 524, 692
Cac8I GCNNGC 1 cut(s) 279
CaiI CAGNNNCTG 1 cut(s) 502
CciI TCATGA 1 cut(s) 406
Cfr10I RCCGGY 2 cut(s) 148, 277
Cfr13I GGNCC 2 cut(s) 28, 454
Csp6I GTAC 1 cut(s) 412
CviAII CATG 6 cut(s) 8, 215, 365, 407, 441, 709
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 3 cut(s) 282, 495, 520
DpnI GATC 2 cut(s) 308, 322
DpnII GATC 2 cut(s) 306, 320
DrdI GACNNNNNNGTC 1 cut(s) 26
DseDI GACNNNNNNGTC 1 cut(s) 26
EaeI YGGCCR 2 cut(s) 292, 367
Eam1104I CTCTTC 3 cut(s) 171, 338, 383
EarI CTCTTC 3 cut(s) 171, 338, 383
Eco130I CCWWGG 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 12
Eco32I GATATC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 28
EcoRII CCWGG 4 cut(s) 289, 294, 421, 456
EcoRV GATATC 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FaeI CATG 6 cut(s) 11, 218, 368, 410, 444, 712
FaiI YATR 9 cut(s) 9, 216, 366, 408, 442, 677, 681, 710, 738
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 6 cut(s) 7, 214, 364, 406, 440, 708
Fnu4HI GCNGC 3 cut(s) 137, 394, 514
FokI GGATG 4 cut(s) 61, 233, 518, 526
Fsp4HI GCNGC 3 cut(s) 137, 394, 514
FspBI CTAG 2 cut(s) 545, 635
GluI GCNGC 3 cut(s) 137, 394, 514
GsaI CCCAGC 1 cut(s) 400
HaeIII GGCC 3 cut(s) 294, 369, 455
HapII CCGG 2 cut(s) 149, 278
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 6 cut(s) 11, 218, 368, 410, 444, 712
HinfI GANTC 5 cut(s) 190, 227, 349, 476, 754
HpaII CCGG 2 cut(s) 149, 278
HphI GGTGA 2 cut(s) 72, 597
Hpy188I TCNGA 4 cut(s) 189, 232, 354, 447
Hpy188III TCNNGA 4 cut(s) 31, 407, 503, 635
Hpy99I CGWCG 1 cut(s) 321
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 4 cut(s) 267, 529, 565, 601
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 283
HpyF3I CTNAG 3 cut(s) 282, 495, 520
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 6 cut(s) 11, 218, 368, 410, 444, 712
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 306, 320
LguI GCTCTTC 1 cut(s) 383
LmnI GCTCC 3 cut(s) 181, 298, 521
Lsp1109I GCAGC 2 cut(s) 405, 500
MaeI CTAG 2 cut(s) 545, 635
MaeII ACGT 1 cut(s) 35
MalI GATC 2 cut(s) 308, 322
MboI GATC 2 cut(s) 306, 320
MboII GAAGA 8 cut(s) 188, 214, 217, 352, 355, 397, 400, 623
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 2 cut(s) 210, 746
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 2 cut(s) 184, 343
MnlI CCTC 7 cut(s) 6, 172, 272, 339, 504, 510, 529
Mox20I TGGCCA 1 cut(s) 294
MroNI GCCGGC 1 cut(s) 277
MroXI GAANNNNTTC 2 cut(s) 226, 558
MscI TGGCCA 1 cut(s) 294
MseI TTAA 2 cut(s) 74, 723
MslI CAYNNNNRTG 2 cut(s) 47, 369
Msp20I TGGCCA 1 cut(s) 294
MspA1I CMGCKG 2 cut(s) 25, 396
MspI CCGG 2 cut(s) 149, 278
MspR9I CCNGG 4 cut(s) 291, 296, 423, 458
MvaI CCWGG 4 cut(s) 291, 296, 423, 458
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 145, 283
NaeI GCCGGC 1 cut(s) 279
NcoI CCATGG 1 cut(s) 364
NdeII GATC 2 cut(s) 306, 320
NgoMIV GCCGGC 1 cut(s) 277
NlaIII CATG 6 cut(s) 11, 218, 368, 410, 444, 712
NlaIV GGNNCC 1 cut(s) 164
NmeAIII GCCGAG 1 cut(s) 711
NspI RCATGY 2 cut(s) 11, 712
PagI TCATGA 1 cut(s) 406
PciI ACATGT 1 cut(s) 708
PciSI GCTCTTC 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdiI GCCGGC 1 cut(s) 279
PdmI GAANNNNTTC 2 cut(s) 226, 558
PfeI GAWTC 3 cut(s) 227, 476, 754
PkrI GCNGC 3 cut(s) 138, 395, 515
PleI GAGTC 2 cut(s) 184, 343
PpsI GAGTC 2 cut(s) 184, 343
PscI ACATGT 1 cut(s) 708
Psp6I CCWGG 4 cut(s) 289, 294, 421, 456
PspFI CCCAGC 1 cut(s) 396
PspGI CCWGG 4 cut(s) 289, 294, 421, 456
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 28, 454
PstI CTGCAG 2 cut(s) 269, 531
PstNI CAGNNNCTG 1 cut(s) 502
PvuII CAGCTG 2 cut(s) 25, 396
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 2 cut(s) 47, 369
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 2 cut(s) 74, 723
SatI GCNGC 3 cut(s) 137, 394, 514
Sau3AI GATC 2 cut(s) 306, 320
Sau96I GGNCC 2 cut(s) 28, 454
ScaI AGTACT 1 cut(s) 413
SchI GAGTC 2 cut(s) 184, 343
ScrFI CCNGG 4 cut(s) 291, 296, 423, 458
SfcI CTRYAG 3 cut(s) 157, 265, 527
SinI GGWCC 1 cut(s) 28
SmiMI CAYNNNNRTG 2 cut(s) 47, 369
Sse9I AATT 2 cut(s) 210, 746
SsiI CCGC 2 cut(s) 46, 137
SspMI CTAG 2 cut(s) 545, 635
StyD4I CCNGG 4 cut(s) 289, 294, 421, 456
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 316, 383
TasI AATT 2 cut(s) 210, 746
TatI WGTACW 1 cut(s) 411
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 3 cut(s) 227, 476, 754
Tru1I TTAA 2 cut(s) 74, 723
Tru9I TTAA 2 cut(s) 74, 723
TscAI CASTG 3 cut(s) 150, 531, 699
TseI GCWGC 2 cut(s) 393, 513
TspDTI ATGAA 8 cut(s) 203, 395, 429, 444, 476, 489, 660, 719
TspRI CASTG 3 cut(s) 150, 531, 699
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 1 cut(s) 210
XbaI TCTAGA 1 cut(s) 634
XceI RCATGY 2 cut(s) 11, 712
XmnI GAANNNNTTC 2 cut(s) 226, 558
XspI CTAG 2 cut(s) 545, 635
ZraI GACGTC 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.