MD01G1093500.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000197
Physical Location & Seq
Reverse (-)
20844530 .. 20846106
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1093500.v1.1.491

Sequence Viewer

Length: 639 bp
ATGAGCGGCAGCGTCGCACCTGAAGAAGGAGATGCAATGCGTGTGAATGTGAGCCGACTACCTGGGTTCGGATTCTCCCCCACTGATGAGTTACTGGTCAGCTACTACCTGAAGAACAAGATAGAGGGGACGGACTCCCATTTCCGCCACGTCATCCCTGAAATCGATGTCTGCAAGTACGAGCCCTGCGATATTCCTGCATTCTTCCCAGAAGTTCATGGGAAGGAGTGGTTCTTCTTTAGCCGGCTCGATTACAAGTACAACGGCACTCGCTGCAACCGGACCACGGGTCAAGGCTTTTACAAGATCACAGGAATGGATCGTAAGATCAGGGCTGAAGAATCCAAAGCTGTGATTGGGAAGAAGAGGATTCTGACATTCTACGAAGGTCGTCTGCCGAAATCAAAGAAGACCAATTGGGTACTCCATGAGTATAATCTCACAGAAACTAAGGTGAGTTCTAAACCCACCAAGCAGATGAACTTTGTCCTCTGGCGCCTGAAGAACATGTCAGCTAGTTATAAGAAGCCGAAGGGTGATCCAATCCACGGCGAATTAGCTGATACAGGTGCTACCTCGGAAGATTATCAAGCTGCTGTAAGTGACGTGATTGCAGAGCCAGTGGAACAGCTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

213

Amino Acids

24.12

Weight (kDa)

8.61

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 21 - 147 1.9e-35 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AccB1I GGYRCC 1 cut(s) 495
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 2 cut(s) 6, 145
AclWI GGATC 2 cut(s) 327, 533
AcuI CTGAAG 4 cut(s) 42, 131, 357, 521
AcyI GRCGYC 1 cut(s) 496
AfaI GTAC 3 cut(s) 179, 260, 423
AfiI CCNNNNNNNGG 4 cut(s) 26, 68, 286, 548
AflIII ACRYGT 1 cut(s) 507
AhdI GACNNNNNGTC 1 cut(s) 288
AjiI CACGTC 2 cut(s) 151, 607
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 6 cut(s) 102, 350, 515, 560, 593, 631
AluI AGCT 6 cut(s) 102, 350, 515, 560, 593, 631
AlwI GGATC 2 cut(s) 327, 533
ApeKI GCWGC 3 cut(s) 9, 273, 593
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 2 cut(s) 466, 548
AvaII GGWCC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 495
BanII GRGCYC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 3 cut(s) 21, 260, 580
BceAI ACGGC 2 cut(s) 280, 565
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 1 cut(s) 63
BfaI CTAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 499
BisI GCNGC 4 cut(s) 7, 10, 274, 594
BlsI GCNGC 4 cut(s) 8, 11, 275, 595
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 282
BmeRI GACNNNNNGTC 1 cut(s) 288
BmgBI CACGTC 2 cut(s) 151, 607
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 497
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 416
Bsa29I ATCGAT 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 496
BsaJI CCNNGG 4 cut(s) 62, 285, 547, 576
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 68, 286, 548
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 2 cut(s) 99, 620
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 63
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 4 cut(s) 62, 285, 547, 576
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 4 cut(s) 26, 68, 286, 548
BseMI GCAATG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 99, 620
BseXI GCAGC 3 cut(s) 21, 260, 580
BseYI CCCAGC 1 cut(s) 631
BshNI GGYRCC 1 cut(s) 495
BshVI ATCGAT 1 cut(s) 165
BsiSI CCGG 2 cut(s) 244, 280
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 4 cut(s) 26, 68, 286, 548
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 4 cut(s) 306, 319, 327, 538
BspACI CCGC 2 cut(s) 6, 145
BspDI ATCGAT 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 497
BspPI GGATC 2 cut(s) 327, 533
BspT107I GGYRCC 1 cut(s) 495
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 2 cut(s) 99, 620
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 4 cut(s) 62, 285, 547, 576
BssMI GATC 4 cut(s) 306, 319, 327, 538
BssNI GRCGYC 1 cut(s) 496
Bst2UI CCWGG 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 359
BstACI GRCGYC 1 cut(s) 496
BstAPI GCANNNNNTGC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 450
BstDSI CCRYGG 2 cut(s) 285, 547
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 4 cut(s) 309, 322, 330, 541
BstMBI GATC 4 cut(s) 306, 319, 327, 538
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 21, 260, 580
BstV2I GAAGAC 1 cut(s) 416
Bsu15I ATCGAT 1 cut(s) 165
BsuTUI ATCGAT 1 cut(s) 165
BtgI CCRYGG 2 cut(s) 285, 547
BtrI CACGTC 2 cut(s) 151, 607
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 81, 627
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 498
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 282
ClaI ATCGAT 1 cut(s) 165
Csp6I GTAC 3 cut(s) 178, 259, 422
CviAII CATG 3 cut(s) 218, 428, 508
CviQI GTAC 3 cut(s) 178, 259, 422
DdeI CTNAG 1 cut(s) 450
DinI GGCGCC 1 cut(s) 497
DpnI GATC 4 cut(s) 308, 321, 329, 540
DpnII GATC 4 cut(s) 306, 319, 327, 538
DriI GACNNNNNGTC 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 359
Eam1105I GACNNNNNGTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 359
EciI GGCGGA 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 282
Eco57I CTGAAG 4 cut(s) 42, 131, 357, 521
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 186
EgeI GGCGCC 1 cut(s) 497
EheI GGCGCC 1 cut(s) 497
FaeI CATG 3 cut(s) 221, 431, 511
FaiI YATR 5 cut(s) 219, 429, 435, 509, 522
FaqI GGGAC 1 cut(s) 142
FatI CATG 3 cut(s) 217, 427, 507
Fnu4HI GCNGC 4 cut(s) 7, 10, 274, 594
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 4 cut(s) 7, 10, 274, 594
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 497
GluI GCNGC 4 cut(s) 7, 10, 274, 594
GsaI CCCAGC 1 cut(s) 635
HaeII RGCGCY 1 cut(s) 499
HapII CCGG 2 cut(s) 244, 280
HhaI GCGC 1 cut(s) 498
Hin1I GRCGYC 1 cut(s) 496
Hin1II CATG 3 cut(s) 221, 431, 511
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HinfI GANTC 4 cut(s) 72, 134, 341, 370
HpaII CCGG 2 cut(s) 244, 280
HphI GGTGA 2 cut(s) 466, 548
Hpy188I TCNGA 3 cut(s) 71, 375, 580
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 20, 217, 380, 526
HpyCH4IV ACGT 2 cut(s) 150, 606
HpyCH4V TGCA 5 cut(s) 35, 174, 200, 276, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 2 cut(s) 150, 606
Hsp92I GRCGYC 1 cut(s) 496
Hsp92II CATG 3 cut(s) 221, 431, 511
HspAI GCGC 1 cut(s) 496
KasI GGCGCC 1 cut(s) 495
KroI GCCGGC 1 cut(s) 243
KroNI GCCGGC 1 cut(s) 245
Kzo9I GATC 4 cut(s) 306, 319, 327, 538
Lsp1109I GCAGC 3 cut(s) 21, 260, 580
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 516
MaeII ACGT 2 cut(s) 150, 606
MaeIII GTNAC 2 cut(s) 90, 602
MalI GATC 4 cut(s) 308, 321, 329, 540
MbiI CCGCTC 1 cut(s) 6
MboI GATC 4 cut(s) 306, 319, 327, 538
MfeI CAATTG 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 2 cut(s) 415, 554
Mly113I GGCGCC 1 cut(s) 496
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 4 cut(s) 118, 360, 500, 586
MroNI GCCGGC 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 631
MspI CCGG 2 cut(s) 244, 280
MspR9I CCNGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 415
Mva1269I GAATGC 1 cut(s) 200
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 273
NaeI GCCGGC 1 cut(s) 245
NarI GGCGCC 1 cut(s) 496
NdeII GATC 4 cut(s) 306, 319, 327, 538
NgoMIV GCCGGC 1 cut(s) 243
NlaIII CATG 3 cut(s) 221, 431, 511
NlaIV GGNNCC 1 cut(s) 497
NmuCI GTSAC 1 cut(s) 602
NspI RCATGY 1 cut(s) 511
PciI ACATGT 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PctI GAATGC 1 cut(s) 200
PdiI GCCGGC 1 cut(s) 245
PfeI GAWTC 3 cut(s) 72, 341, 370
PkrI GCNGC 4 cut(s) 8, 11, 275, 595
PleI GAGTC 1 cut(s) 128
PluTI GGCGCC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 128
PscI ACATGT 1 cut(s) 507
PsiI TTATAA 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 631
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 497
PspPI GGNCC 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 631
RsaI GTAC 3 cut(s) 179, 260, 423
RsaNI GTAC 3 cut(s) 178, 259, 422
RseI CAYNNNNRTG 1 cut(s) 314
SatI GCNGC 4 cut(s) 7, 10, 274, 594
Sau3AI GATC 4 cut(s) 306, 319, 327, 538
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 1 cut(s) 22
SfoI GGCGCC 1 cut(s) 497
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 2 cut(s) 415, 554
SsiI CCGC 2 cut(s) 6, 145
SspDI GGCGCC 1 cut(s) 495
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 1 cut(s) 61
TaiI ACGT 2 cut(s) 153, 609
TaqI TCGA 2 cut(s) 165, 249
TasI AATT 2 cut(s) 415, 554
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 9
TfiI GAWTC 3 cut(s) 72, 341, 370
TscAI CASTG 2 cut(s) 88, 627
TseFI GTSAC 1 cut(s) 602
TseI GCWGC 3 cut(s) 9, 273, 593
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 2 cut(s) 206, 494
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 2 cut(s) 88, 627
VpaK11BI GGWCC 1 cut(s) 282
XagI CCTNNNNNAGG 1 cut(s) 24
XceI RCATGY 1 cut(s) 511
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.