MD07G1162700.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000197
Physical Location & Seq
Reverse (-)
23759517 .. 23763009
3493 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1162700.v1.1.491

Sequence Viewer

Length: 1323 bp
ATGAGCAGTAGCAGCAGCAGCAACCGCAGCGGCATGACAGCTGAGGAAGGAGATGCAGTGAGTGTGAATGTGATCCCACTGCCTGGGTTCAGATTCTACCCCACTGAAGAGTTGCTGGTCAGCCACTACTTGAGGAAGAAGATAGAGGGCACTGACTCCCATTTCCGCCACTTCATCCCTGAAATCGATGTCAGCAAGCACGAGCCCTGCGATCTTCCAGCATTCTACCCAGACGTTCACGAGAAGGAGTGGTTCTTCTTCAGCAGGCCCGATTACAAGTACGTCAACAGCACTCGCTGTAACCGGGCCACAGAACAAGGCTTTTACAAGATCACAGGCAAGGAACGTGAGATCAAGGCTGAACAGTCCAAAGCTGTGATTGGGAAGAAGAGGACTCTGACCTTCTACGAAGGTCGTGTGCCCAATGCAACGAAGACCGATTGGATAGTACATGAGTATTATCTCACTGAAACTGAGGTGGGTTCTAAACCCACCAAGCGGATGGACTTTGTCATCTGCCGTCTGAAGAACAACTCAGCTAGTTATAAGAAGCCGAAGATTGATTCAATCTGTGGCGAATTAGCTGATTCGGGAGTGACTTCTGAAGAAGATCGAGATGCTGTTAGTGATGTGATTGCGGAGCCAGTGGAACATTTGGGATCCAAAGAGCCAGGAGATGTTAATAGGTCTGAGTCTCCAGATGGTTCTTGTCCTATGGACTGCAATGGCATTTTGACCATTGATGATGGTGATGATGGAACAGGTGGCTGGAAATTCAATTTCGATGATCCAGTTGCATCTGATATGGTTCGAGAGTTGTGTGCTGAGGGAGAGATTCCAAATTCACCCTCTGAACCGCTGCAGCCACCGCAGACACCACAGCCACATCAGCCACAAGATTACTACCCCCGCACACTGCAGCCACTGCAGTCACCACAGCCACATCAACCACAGGATTACTGCCCCTCCACACTGCAGCAACCATTACACACTAGGCATGGAATTGATCCCTATGTCTATGGAGATTGCACAAAGCGGCAATCTTTAAGCCCGGATGATATTTCTTCTCCTGAATACAAGAATAGTATTTCAACCAATGATCCCAATGAACAAGTCAGCAAACTCGCTAATGGTGTTCAAGATCGAGCTACAGATTCAGAGGCTTTTTTTAATCCAGAAGAGCGTATGGGTCCGTTTGATTACTTGTTGATGTCACCAATGAACACGGATTTGGGAGAATTTGTGCATGCCAGTAAATATATTGGATGCAGTGATGAGTTGCCGTCTCTAGATGACACGGAGATTGCAACTTTTTTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

441

Amino Acids

49.45

Weight (kDa)

4.77

Isoelectric Point (pI)

62.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 28 - 154 5.1e-36 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AccB7I CCANNNNNTGG 1 cut(s) 83
AciI CCGC 9 cut(s) 25, 30, 166, 499, 638, 857, 869, 910, 1036
AclWI GGATC 6 cut(s) 67, 654, 667, 782, 1001, 1094
AcsI RAATTY 3 cut(s) 773, 841, 1238
AcuI CTGAAG 4 cut(s) 126, 244, 545, 624
AfaI GTAC 2 cut(s) 281, 450
AfiI CCNNNNNNNGG 2 cut(s) 83, 498
AgsI TTSAA 4 cut(s) 567, 778, 1092, 1139
AjnI CCWGG 2 cut(s) 82, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 1214, 1246
AluBI AGCT 5 cut(s) 41, 374, 539, 584, 1148
AluI AGCT 5 cut(s) 41, 374, 539, 584, 1148
Alw26I GTCTC 2 cut(s) 699, 1290
AlwI GGATC 6 cut(s) 67, 654, 667, 782, 1001, 1094
AlwNI CAGNNNCTG 1 cut(s) 925
AoxI GGCC 2 cut(s) 266, 306
ApeKI GCWGC 8 cut(s) 12, 15, 18, 27, 859, 862, 919, 976
ApoI RAATTY 3 cut(s) 773, 841, 1238
AspS9I GGNCC 3 cut(s) 267, 306, 1190
AsuC2I CCSGG 2 cut(s) 305, 1052
AsuHPI GGTGA 4 cut(s) 761, 837, 924, 1206
AvaII GGWCC 1 cut(s) 1190
BaeGI GKGCMC 2 cut(s) 152, 423
BamHI GGATCC 1 cut(s) 659
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 2 cut(s) 200, 239
BbsI GAAGAC 1 cut(s) 440
BbvCI CCTCAGC 2 cut(s) 42, 825
BbvI GCAGC 8 cut(s) 24, 27, 30, 39, 846, 874, 931, 988
BccI CCATC 4 cut(s) 496, 695, 740, 749
BceAI ACGGC 2 cut(s) 504, 1267
BciT130I CCWGG 2 cut(s) 84, 672
BcnI CCSGG 2 cut(s) 305, 1052
BcoDI GTCTC 2 cut(s) 699, 1290
BfaI CTAG 3 cut(s) 540, 993, 1289
BfmI CTRYAG 5 cut(s) 860, 917, 926, 974, 1149
Bme1390I CCNGG 4 cut(s) 84, 305, 672, 1052
Bme18I GGWCC 1 cut(s) 1190
BmgT120I GGNCC 3 cut(s) 267, 306, 1190
BmiI GGNNCC 3 cut(s) 642, 661, 1191
BmrFI CCNGG 4 cut(s) 84, 305, 672, 1052
BmsI GCATC 4 cut(s) 43, 607, 806, 1256
BpiI GAAGAC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 2 cut(s) 42, 825
BpuEI CTTGAG 1 cut(s) 151
BpuMI CCSGG 2 cut(s) 305, 1052
Bsa29I ATCGAT 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 83
BsaXI ACNNNNNCTCC 6 cut(s) 42, 72, 950, 980, 1227, 1257
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 498
Bse1I ACTGG 3 cut(s) 644, 791, 1251
Bse3DI GCAATG 1 cut(s) 730
BseBI CCWGG 2 cut(s) 84, 672
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 4 cut(s) 174, 507, 1060, 1271
BseLI CCNNNNNNNGG 2 cut(s) 83, 498
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 5 cut(s) 33, 465, 549, 681, 816
BseNI ACTGG 3 cut(s) 644, 791, 1251
BseSI GKGCMC 2 cut(s) 152, 423
BseXI GCAGC 8 cut(s) 24, 27, 30, 39, 846, 874, 931, 988
BshFI GGCC 2 cut(s) 268, 308
BshVI ATCGAT 1 cut(s) 186
BsiSI CCGG 2 cut(s) 304, 1052
BslI CCNNNNNNNGG 2 cut(s) 83, 498
BsmAI GTCTC 2 cut(s) 699, 1290
BsmBI CGTCTC 1 cut(s) 1290
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 2 cut(s) 268, 308
Bsp1286I GDGCHC 3 cut(s) 152, 207, 423
BspACI CCGC 9 cut(s) 25, 30, 166, 499, 638, 857, 869, 910, 1036
BspANI GGCC 2 cut(s) 268, 308
BspCNI CTCAG 5 cut(s) 34, 466, 548, 682, 817
BspDI ATCGAT 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 642, 661, 1191
BspMAI CTGCAG 4 cut(s) 864, 921, 930, 978
BspPI GGATC 6 cut(s) 67, 654, 667, 782, 1001, 1094
BspQI GCTCTTC 1 cut(s) 1173
BsrDI GCAATG 1 cut(s) 730
BsrI ACTGG 3 cut(s) 644, 791, 1251
BssECI CCNNGG 1 cut(s) 83
BssSI CACGAG 2 cut(s) 200, 239
Bst2BI CACGAG 2 cut(s) 200, 239
Bst2UI CCWGG 2 cut(s) 84, 672
Bst4CI ACNGT 1 cut(s) 366
Bst6I CTCTTC 3 cut(s) 102, 383, 1173
BstAPI GCANNNNNTGC 1 cut(s) 925
BstC8I GCNNGC 3 cut(s) 197, 266, 1248
BstDEI CTNAG 5 cut(s) 42, 474, 535, 690, 825
BstF5I GGATG 4 cut(s) 174, 507, 1060, 1271
BstMAI GTCTC 2 cut(s) 699, 1290
BstMWI GCNNNNNNNGC 7 cut(s) 12, 18, 24, 27, 868, 889, 925
BstNI CCWGG 2 cut(s) 84, 672
BstNSI RCATGY 1 cut(s) 1250
BstSCI CCNGG 4 cut(s) 82, 303, 670, 1050
BstSFI CTRYAG 5 cut(s) 860, 917, 926, 974, 1149
BstSLI GKGCMC 2 cut(s) 152, 423
BstV1I GCAGC 8 cut(s) 24, 27, 30, 39, 846, 874, 931, 988
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 659
BstXI CCANNNNNNTGG 1 cut(s) 502
BstYI RGATCY 1 cut(s) 659
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 2 cut(s) 268, 308
BsuTUI ATCGAT 1 cut(s) 186
BtsCI GGATG 4 cut(s) 174, 507, 1060, 1271
BtsI GCAGTG 6 cut(s) 63, 77, 914, 923, 971, 1276
Cac8I GCNNGC 3 cut(s) 197, 266, 1248
CaiI CAGNNNCTG 1 cut(s) 925
Cfr13I GGNCC 3 cut(s) 267, 306, 1190
ClaI ATCGAT 1 cut(s) 186
Csp6I GTAC 2 cut(s) 280, 449
CviAII CATG 4 cut(s) 34, 452, 998, 1247
CviQI GTAC 2 cut(s) 280, 449
DdeI CTNAG 5 cut(s) 42, 474, 535, 690, 825
Eam1104I CTCTTC 3 cut(s) 102, 383, 1173
EarI CTCTTC 3 cut(s) 102, 383, 1173
EciI GGCGGA 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 1190
Eco57I CTGAAG 4 cut(s) 126, 244, 545, 624
EcoRII CCWGG 2 cut(s) 82, 670
EcoT38I GRGCYC 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 1290
FaeI CATG 4 cut(s) 37, 455, 1001, 1250
FatI CATG 4 cut(s) 33, 451, 997, 1246
FauI CCCGC 1 cut(s) 917
FokI GGATG 4 cut(s) 161, 514, 1067, 1278
FriOI GRGCYC 1 cut(s) 207
FspBI CTAG 3 cut(s) 540, 993, 1289
GsuI CTGGAG 1 cut(s) 681
HaeIII GGCC 2 cut(s) 268, 308
HapII CCGG 2 cut(s) 304, 1052
Hin1II CATG 4 cut(s) 37, 455, 1001, 1250
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 8 cut(s) 93, 155, 394, 563, 587, 692, 835, 1154
HpaII CCGG 2 cut(s) 304, 1052
HphI GGTGA 4 cut(s) 761, 837, 924, 1206
Hpy166II GTNNAC 2 cut(s) 238, 286
Hpy188I TCNGA 8 cut(s) 92, 399, 525, 604, 691, 802, 853, 1159
Hpy188III TCNNGA 9 cut(s) 239, 591, 614, 698, 812, 1070, 1139, 1175, 1289
Hpy8I GTNNAC 2 cut(s) 238, 286
HpyAV CCTTC 4 cut(s) 41, 238, 404, 412
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 3 cut(s) 234, 282, 346
HpyF10VI GCNNNNNNNGC 7 cut(s) 12, 18, 24, 27, 868, 889, 925
HpyF3I CTNAG 5 cut(s) 42, 474, 535, 690, 825
HpySE526I ACGT 3 cut(s) 234, 282, 346
Hsp92II CATG 4 cut(s) 37, 455, 1001, 1250
LguI GCTCTTC 1 cut(s) 1173
LmnI GCTCC 1 cut(s) 640
Lsp1109I GCAGC 8 cut(s) 24, 27, 30, 39, 846, 874, 931, 988
LweI GCATC 4 cut(s) 43, 607, 806, 1256
MaeI CTAG 3 cut(s) 540, 993, 1289
MaeII ACGT 3 cut(s) 234, 282, 346
MaeIII GTNAC 4 cut(s) 299, 595, 930, 1212
MflI RGATCY 1 cut(s) 659
MhlI GDGCHC 3 cut(s) 152, 207, 423
MluCI AATT 6 cut(s) 578, 773, 778, 841, 1002, 1238
MlyI GAGTC 3 cut(s) 149, 388, 701
MnlI CCTC 9 cut(s) 37, 126, 139, 384, 469, 820, 859, 976, 1153
MseI TTAA 3 cut(s) 681, 1046, 1170
MspA1I CMGCKG 3 cut(s) 30, 41, 859
MspI CCGG 2 cut(s) 304, 1052
MspR9I CCNGG 4 cut(s) 84, 305, 672, 1052
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 2 cut(s) 84, 672
MwoI GCNNNNNNNGC 7 cut(s) 12, 18, 24, 27, 868, 889, 925
NciI CCSGG 2 cut(s) 305, 1052
NlaIII CATG 4 cut(s) 37, 455, 1001, 1250
NlaIV GGNNCC 3 cut(s) 642, 661, 1191
NmuCI GTSAC 3 cut(s) 595, 930, 1212
NspI RCATGY 1 cut(s) 1250
PaeI GCATGC 1 cut(s) 1250
PciSI GCTCTTC 1 cut(s) 1173
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 5 cut(s) 93, 563, 587, 835, 1154
PflFI GACNNNGTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 83
PleI GAGTC 3 cut(s) 149, 388, 700
PpsI GAGTC 3 cut(s) 149, 388, 700
PsiI TTATAA 1 cut(s) 546
Psp6I CCWGG 2 cut(s) 82, 670
PspGI CCWGG 2 cut(s) 82, 670
PspN4I GGNNCC 3 cut(s) 642, 661, 1191
PspPI GGNCC 3 cut(s) 267, 306, 1190
PstI CTGCAG 4 cut(s) 864, 921, 930, 978
PstNI CAGNNNCTG 1 cut(s) 925
PsuI RGATCY 1 cut(s) 659
PsyI GACNNNGTC 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 2 cut(s) 281, 450
RsaNI GTAC 2 cut(s) 280, 449
SapI GCTCTTC 1 cut(s) 1173
SaqAI TTAA 3 cut(s) 681, 1046, 1170
Sau96I GGNCC 3 cut(s) 267, 306, 1190
SchI GAGTC 3 cut(s) 149, 388, 701
ScrFI CCNGG 4 cut(s) 84, 305, 672, 1052
SduI GDGCHC 3 cut(s) 152, 207, 423
SfaNI GCATC 4 cut(s) 43, 607, 806, 1256
SfcI CTRYAG 5 cut(s) 860, 917, 926, 974, 1149
SinI GGWCC 1 cut(s) 1190
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SphI GCATGC 1 cut(s) 1250
Sse9I AATT 6 cut(s) 578, 773, 778, 841, 1002, 1238
SsiI CCGC 9 cut(s) 25, 30, 166, 499, 638, 857, 869, 910, 1036
SspMI CTAG 3 cut(s) 540, 993, 1289
StyD4I CCNGG 4 cut(s) 82, 303, 670, 1050
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 3 cut(s) 237, 285, 349
TaqI TCGA 5 cut(s) 186, 613, 783, 811, 1144
TaqII GACCGA 1 cut(s) 452
TasI AATT 6 cut(s) 578, 773, 778, 841, 1002, 1238
TatI WGTACW 1 cut(s) 448
TauI GCSGC 2 cut(s) 33, 1039
TfiI GAWTC 5 cut(s) 93, 563, 587, 835, 1154
Tru1I TTAA 3 cut(s) 681, 1046, 1170
Tru9I TTAA 3 cut(s) 681, 1046, 1170
TseFI GTSAC 3 cut(s) 595, 930, 1212
TseI GCWGC 8 cut(s) 12, 15, 18, 27, 859, 862, 919, 976
Tsp45I GTSAC 3 cut(s) 595, 930, 1212
TspDTI ATGAA 3 cut(s) 163, 1122, 1235
TspGWI ACGGA 3 cut(s) 1182, 1241, 1313
Tth111I GACNNNGTC 1 cut(s) 509
Van91I CCANNNNNTGG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 1190
XapI RAATTY 3 cut(s) 773, 841, 1238
XbaI TCTAGA 1 cut(s) 1288
XceI RCATGY 1 cut(s) 1250
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XspI CTAG 3 cut(s) 540, 993, 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.