RchiOBHm_Chr1g0361501
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000197
Physical Location & Seq
Reverse (-)
53445884 .. 53447597
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58636

Sequence Viewer

Length: 735 bp
ATGAATAGGGTTGGTTCTGATTTTGTTGTTTTTGTGTGTTGGGTTCGGGCAGCTTTGTTGGGCACTGAGACAGAGGCTCATGACATGGAGTGGTTCTTCTTCACCAGAAAGGCTTACAAGTACAACAAAAGCTCTCGCTCGAATCGGAGAACGAAGAAGGGATACTGGAAAATCACAGGGAACGAGCGTGGGATTACAGCTCGACGATCCAAATCTGTTATCGGGAAGAAGAGGACATTGACTTTTTACCAGGGGCGTGCGCCGAAATCGAAGAAGACCAGCTGGGTTATTCATGGGCACTATCTTCCTGGAGATGGAGTTGCTTCGTATCCGAAGCAGGCCCAGGGTGACTTTGTTATCTGTCTCTTGAAGATTAGATCAGATAAGAAGGATTCTCCGGTCAGTAACGAAGGAGAAGCCAGAAGCACGAGTGTGTCCGAAATGAATCAAGAGGGAAATGAGAAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCAGTCACCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATGTCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAGTTATTCTTATCTATTAGATGGGAATGAAGTTTCAACCTGTGATGAAGATGAGACTGTGTATGATGTGTTTCCAAAGCTACGTGATCTGCCAGAACAAAATCTGGATTCACTCTTTGGTCCACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

244

Amino Acids

27.63

Weight (kDa)

6.53

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 98 1.3e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 538
AclWI GGATC 1 cut(s) 201
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 314, 538
AgeI ACCGGT 1 cut(s) 523
AgsI TTSAA 2 cut(s) 370, 642
AjnI CCWGG 3 cut(s) 249, 307, 342
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 7 cut(s) 53, 132, 200, 282, 538, 545, 685
AluI AGCT 7 cut(s) 53, 132, 200, 282, 538, 545, 685
Alw26I GTCTC 3 cut(s) 62, 368, 653
AlwI GGATC 1 cut(s) 201
AlwNI CAGNNNCTG 1 cut(s) 490
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 50, 501
AsiGI ACCGGT 1 cut(s) 523
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 340, 725
AsuHPI GGTGA 4 cut(s) 94, 359, 513, 585
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 2 cut(s) 65, 300
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BauI CACGAG 1 cut(s) 427
BbsI GAAGAC 1 cut(s) 281
BbvCI CCTCAGC 2 cut(s) 483, 508
BbvI GCAGC 2 cut(s) 62, 488
BccI CCATC 3 cut(s) 308, 483, 620
BciT130I CCWGG 3 cut(s) 251, 309, 344
BciVI GTATCC 2 cut(s) 155, 339
BcoDI GTCTC 3 cut(s) 62, 368, 653
BfmI CTRYAG 1 cut(s) 515
BfuI GTATCC 2 cut(s) 155, 339
BisI GCNGC 2 cut(s) 51, 502
BlsI GCNGC 2 cut(s) 52, 503
Bme1390I CCNGG 3 cut(s) 251, 309, 344
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 2 cut(s) 340, 725
BmrFI CCNGG 3 cut(s) 251, 309, 344
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 2 cut(s) 483, 508
BsaAI YACGTR 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 250, 342, 343
BsaWI WCCGGW 2 cut(s) 397, 523
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 488, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 538
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 211
BseBI CCWGG 3 cut(s) 251, 309, 344
BseDI CCNNGG 3 cut(s) 250, 342, 343
BseGI GGATG 1 cut(s) 499
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 314, 538
BseMII CTCAG 3 cut(s) 57, 497, 522
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 496
BseSI GKGCMC 2 cut(s) 65, 300
BseXI GCAGC 2 cut(s) 62, 488
BseYI CCCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 341
BshTI ACCGGT 1 cut(s) 523
BsiSI CCGG 2 cut(s) 398, 524
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 2 cut(s) 314, 538
BsmAI GTCTC 3 cut(s) 62, 368, 653
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 1 cut(s) 341
Bsp1286I GDGCHC 2 cut(s) 65, 300
Bsp143I GATC 3 cut(s) 206, 377, 691
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 3 cut(s) 58, 496, 521
BspHI TCATGA 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 519
BspPI GGATC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 3 cut(s) 250, 342, 343
BssMI GATC 3 cut(s) 206, 377, 691
BssSI CACGAG 1 cut(s) 427
Bst2BI CACGAG 1 cut(s) 427
Bst2UI CCWGG 3 cut(s) 251, 309, 344
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 2 cut(s) 258, 339
BstDEI CTNAG 3 cut(s) 66, 483, 508
BstF5I GGATG 1 cut(s) 499
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 3 cut(s) 209, 380, 694
BstMAI GTCTC 3 cut(s) 62, 368, 653
BstMBI GATC 3 cut(s) 206, 377, 691
BstNI CCWGG 3 cut(s) 251, 309, 344
BstSCI CCNGG 3 cut(s) 249, 307, 342
BstSFI CTRYAG 1 cut(s) 515
BstSLI GKGCMC 2 cut(s) 65, 300
BstV1I GCAGC 2 cut(s) 62, 488
BstV2I GAAGAC 1 cut(s) 281
BsuI GTATCC 2 cut(s) 155, 339
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 1 cut(s) 499
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 63, 512
Cac8I GCNNGC 2 cut(s) 258, 339
CaiI CAGNNNCTG 1 cut(s) 490
CciI TCATGA 1 cut(s) 79
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 340, 725
Csp6I GTAC 1 cut(s) 121
CspAI ACCGGT 1 cut(s) 523
CviAII CATG 3 cut(s) 80, 85, 293
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 3 cut(s) 66, 483, 508
DpnI GATC 3 cut(s) 208, 379, 693
DpnII GATC 3 cut(s) 206, 377, 691
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 249, 307, 342
FaeI CATG 3 cut(s) 83, 88, 296
FaiI YATR 4 cut(s) 81, 86, 294, 669
FaqI GGGAC 1 cut(s) 514
FatI CATG 3 cut(s) 79, 84, 292
Fnu4HI GCNGC 2 cut(s) 51, 502
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 2 cut(s) 51, 502
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 51, 502
GsaI CCCAGC 1 cut(s) 286
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 341
HapII CCGG 2 cut(s) 398, 524
HhaI GCGC 1 cut(s) 262
Hin1II CATG 3 cut(s) 83, 88, 296
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 4 cut(s) 142, 392, 445, 713
HpaII CCGG 2 cut(s) 398, 524
HphI GGTGA 4 cut(s) 94, 359, 513, 585
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 5 cut(s) 19, 147, 333, 382, 439
Hpy188III TCNNGA 6 cut(s) 80, 223, 367, 449, 491, 710
Hpy8I GTNNAC 1 cut(s) 728
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 3 cut(s) 151, 382, 404
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 3 cut(s) 517, 553, 589
HpyF3I CTNAG 3 cut(s) 66, 483, 508
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 3 cut(s) 83, 88, 296
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 3 cut(s) 206, 377, 691
LmnI GCTCC 1 cut(s) 509
Lsp1109I GCAGC 2 cut(s) 62, 488
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 4 cut(s) 347, 404, 519, 562
MalI GATC 3 cut(s) 208, 379, 693
MboI GATC 3 cut(s) 206, 377, 691
MhlI GDGCHC 2 cut(s) 65, 300
MnlI CCTC 6 cut(s) 67, 225, 445, 492, 498, 517
MroXI GAANNNNTTC 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 2 cut(s) 398, 524
MspR9I CCNGG 3 cut(s) 251, 309, 344
MvaI CCWGG 3 cut(s) 251, 309, 344
NdeII GATC 3 cut(s) 206, 377, 691
NlaIII CATG 3 cut(s) 83, 88, 296
NmuCI GTSAC 3 cut(s) 347, 519, 562
OliI CACNNNNGTG 1 cut(s) 431
PagI TCATGA 1 cut(s) 79
PasI CCCWGGG 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 4 cut(s) 142, 392, 445, 713
PflMI CCANNNNNTGG 1 cut(s) 538
PfoI TCCNGGA 1 cut(s) 307
PinAI ACCGGT 1 cut(s) 523
PkrI GCNGC 2 cut(s) 52, 503
Ppu21I YACGTR 1 cut(s) 689
Psp6I CCWGG 3 cut(s) 249, 307, 342
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 3 cut(s) 249, 307, 342
PspPI GGNCC 2 cut(s) 340, 725
PstI CTGCAG 1 cut(s) 519
PstNI CAGNNNCTG 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 282
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 431
SatI GCNGC 2 cut(s) 51, 502
Sau3AI GATC 3 cut(s) 206, 377, 691
Sau96I GGNCC 2 cut(s) 340, 725
ScrFI CCNGG 3 cut(s) 251, 309, 344
SduI GDGCHC 2 cut(s) 65, 300
SfcI CTRYAG 1 cut(s) 515
SgrAI CRCCGGYG 1 cut(s) 523
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 431
StyD4I CCNGG 3 cut(s) 249, 307, 342
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 1 cut(s) 691
TaqI TCGA 3 cut(s) 140, 202, 269
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 4 cut(s) 142, 392, 445, 713
TscAI CASTG 2 cut(s) 70, 519
TseFI GTSAC 3 cut(s) 347, 519, 562
TseI GCWGC 2 cut(s) 50, 501
Tsp45I GTSAC 3 cut(s) 347, 519, 562
TspDTI ATGAA 5 cut(s) 17, 281, 458, 648, 666
TspRI CASTG 2 cut(s) 70, 519
Van91I CCANNNNNTGG 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.