RchiOBHm_Chr1g0361631
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000197
Physical Location & Seq
Reverse (-)
53495566 .. 53497726
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58649

Sequence Viewer

Length: 912 bp
ATGAGCAGAGAGAACACGACGCCGCTTTCAGTGCCGATAGGCTACAGATTCCATCCCACCGAAGAGGAGCTTGTGAACCACTATTTGAAGAAGAAGATTCATGGTGGAAATGATTCCGAAATCAACCAAATCATCCCTGAAATCGACCTCTGCAAATACGAGCCGGCTGAGCTCCCTGCTTTGTTGGGGACTGAAACAGAGGCTCATGACATGGAGTGGTTCTTCTTCACCAGAAAGGCTTACAAGTACAACAAAAGCTCTCGCTCGAAGCGGAGCACGAACAAGGGATACTGGAAAATCACAGGCCCGGAGCGTGGGATTAAGGCTCGACGATCCAAAGCTGTGATTGCGAAGAAGAGGACATTGACTTTTTACCAGGGTCGTGTGCCAACATCGAAGAAGACCAGCTGCGTCATTCATGAGTATAACCTTCCTGGAAATGGAATTATTCCGTATCCGAAGCAGGCCCAGGGAGACTATGTTATCTGTCGCTTGAAGATAACAGATAAGAAGGATTCTTCGGTCAGTAATGAAGAAGAACCTGGTAGCGCGAGTCTGTCTGAAATGAATCAAGAGGGAAATGAGGATTTGCTACTCCATCAACCTCAACCTCTGGATGACTGCTGCTCCTCAGCACTGCGGTCACCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAACGGCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAGTGATTTTTGTGTTGAAGATGGGAATGAAGTTTCAACCTGTGATGAATGTGAGACTGTGTATGATGTGTTTCCACAGTTTCGTGATCTACCAGAACAAAATCTGGATTCACTCTTTGGTCCACATCAGCCACAAGAGTACTGCCCCTCTATACTGCAGTCACCAATATACACAAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

303

Amino Acids

34.31

Weight (kDa)

5.16

Isoelectric Point (pI)

64.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 144 4.9e-36 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 661
AccII CGCG 1 cut(s) 551
AciI CCGC 3 cut(s) 23, 271, 640
AclWI GGATC 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 2 cut(s) 248, 869
AfiI CCNNNNNNNGG 3 cut(s) 314, 440, 661
AgeI ACCGGT 1 cut(s) 646
AgsI TTSAA 4 cut(s) 88, 496, 746, 765
AjnI CCWGG 4 cut(s) 375, 433, 468, 541
AluBI AGCT 8 cut(s) 70, 172, 258, 341, 408, 661, 668, 907
AluI AGCT 8 cut(s) 70, 172, 258, 341, 408, 661, 668, 907
Alw21I GWGCWC 2 cut(s) 174, 278
Alw26I GTCTC 2 cut(s) 468, 776
AlwI GGATC 1 cut(s) 327
AoxI GGCC 2 cut(s) 304, 465
ApeKI GCWGC 2 cut(s) 408, 624
AsiGI ACCGGT 1 cut(s) 646
Asp700I GAANNNNTTC 2 cut(s) 112, 669
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 3 cut(s) 305, 466, 848
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 4 cut(s) 220, 636, 708, 882
AvaII GGWCC 1 cut(s) 848
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 174, 278
BbvCI CCTCAGC 1 cut(s) 631
BbvI GCAGC 2 cut(s) 395, 611
BccI CCATC 3 cut(s) 60, 606, 743
BceAI ACGGC 1 cut(s) 700
BciT130I CCWGG 4 cut(s) 377, 435, 470, 543
BciVI GTATCC 2 cut(s) 281, 465
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 468, 776
BfmI CTRYAG 2 cut(s) 43, 884
BfuI GTATCC 2 cut(s) 281, 465
BisI GCNGC 3 cut(s) 23, 409, 625
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 3 cut(s) 24, 410, 626
BmcAI AGTACT 1 cut(s) 869
Bme1390I CCNGG 5 cut(s) 308, 377, 435, 470, 543
Bme18I GGWCC 1 cut(s) 848
BmgT120I GGNCC 3 cut(s) 305, 466, 848
BmrFI CCNGG 5 cut(s) 308, 377, 435, 470, 543
BpiI GAAGAC 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 631
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 376, 468, 469
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 4 cut(s) 465, 495, 611, 641
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 440, 661
Bse118I RCCGGY 2 cut(s) 163, 646
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 4 cut(s) 377, 435, 470, 543
BseDI CCNNGG 3 cut(s) 376, 468, 469
BseGI GGATG 3 cut(s) 52, 132, 622
BseLI CCNNNNNNNGG 3 cut(s) 314, 440, 661
BseMII CTCAG 2 cut(s) 159, 645
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 2 cut(s) 80, 619
BseXI GCAGC 2 cut(s) 395, 611
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 2 cut(s) 306, 467
BshTI ACCGGT 1 cut(s) 646
BsiHKAI GWGCWC 2 cut(s) 174, 278
BsiSI CCGG 3 cut(s) 164, 308, 647
BslFI GGGAC 2 cut(s) 202, 637
BslI CCNNNNNNNGG 3 cut(s) 314, 440, 661
BsmAI GTCTC 2 cut(s) 468, 776
BsmFI GGGAC 2 cut(s) 202, 637
BsnI GGCC 2 cut(s) 306, 467
Bsp1286I GDGCHC 2 cut(s) 174, 278
Bsp143I GATC 2 cut(s) 332, 814
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 3 cut(s) 23, 271, 640
BspANI GGCC 2 cut(s) 306, 467
BspCNI CTCAG 2 cut(s) 160, 644
BspFNI CGCG 1 cut(s) 551
BspHI TCATGA 2 cut(s) 205, 418
BspMAI CTGCAG 1 cut(s) 888
BspPI GGATC 1 cut(s) 327
BsrFI RCCGGY 2 cut(s) 163, 646
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 2 cut(s) 163, 646
BssECI CCNNGG 3 cut(s) 376, 468, 469
BssMI GATC 2 cut(s) 332, 814
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 4 cut(s) 377, 435, 470, 543
Bst4CI ACNGT 2 cut(s) 787, 807
Bst6I CTCTTC 2 cut(s) 57, 350
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 165, 465
BstDEI CTNAG 2 cut(s) 168, 631
BstEII GGTNACC 1 cut(s) 642
BstF5I GGATG 3 cut(s) 52, 132, 622
BstFNI CGCG 1 cut(s) 551
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 2 cut(s) 335, 817
BstMAI GTCTC 2 cut(s) 468, 776
BstMBI GATC 2 cut(s) 332, 814
BstMWI GCNNNNNNNGC 3 cut(s) 31, 169, 347
BstNI CCWGG 4 cut(s) 377, 435, 470, 543
BstPI GGTNACC 1 cut(s) 642
BstSCI CCNGG 5 cut(s) 306, 375, 433, 468, 541
BstSFI CTRYAG 2 cut(s) 43, 884
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 2 cut(s) 395, 611
BstV2I GAAGAC 1 cut(s) 407
BsuI GTATCC 2 cut(s) 281, 465
BsuRI GGCC 2 cut(s) 306, 467
BtsCI GGATG 3 cut(s) 52, 132, 622
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 2 cut(s) 36, 635
Cac8I GCNNGC 2 cut(s) 165, 465
CciI TCATGA 2 cut(s) 205, 418
CfoI GCGC 1 cut(s) 551
Cfr10I RCCGGY 2 cut(s) 163, 646
Cfr13I GGNCC 3 cut(s) 305, 466, 848
CseI GACGC 2 cut(s) 28, 400
CsiI ACCWGGT 1 cut(s) 541
Csp6I GTAC 2 cut(s) 247, 868
CspAI ACCGGT 1 cut(s) 646
CviAII CATG 4 cut(s) 101, 206, 211, 419
CviQI GTAC 2 cut(s) 247, 868
DdeI CTNAG 2 cut(s) 168, 631
DpnI GATC 2 cut(s) 334, 816
DpnII GATC 2 cut(s) 332, 814
Eam1104I CTCTTC 2 cut(s) 57, 350
EarI CTCTTC 2 cut(s) 57, 350
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 848
Eco53kI GAGCTC 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 642
EcoICRI GAGCTC 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 642
EcoRII CCWGG 4 cut(s) 375, 433, 468, 541
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 4 cut(s) 104, 209, 214, 422
FaiI YATR 9 cut(s) 102, 207, 212, 420, 426, 480, 792, 881, 898
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 2 cut(s) 202, 637
FatI CATG 4 cut(s) 100, 205, 210, 418
Fnu4HI GCNGC 3 cut(s) 23, 409, 625
FokI GGATG 3 cut(s) 39, 119, 629
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 3 cut(s) 23, 409, 625
GlaI GCGC 1 cut(s) 550
GluI GCNGC 3 cut(s) 23, 409, 625
HaeIII GGCC 2 cut(s) 306, 467
HapII CCGG 3 cut(s) 164, 308, 647
HgaI GACGC 2 cut(s) 28, 400
HhaI GCGC 1 cut(s) 551
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 4 cut(s) 104, 209, 214, 422
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HinfI GANTC 7 cut(s) 48, 97, 113, 515, 553, 568, 836
HpaII CCGG 3 cut(s) 164, 308, 647
HphI GGTGA 4 cut(s) 220, 636, 708, 882
Hpy166II GTNNAC 2 cut(s) 76, 851
Hpy188I TCNGA 3 cut(s) 118, 459, 562
Hpy188III TCNNGA 6 cut(s) 206, 419, 572, 614, 812, 833
Hpy8I GTNNAC 2 cut(s) 76, 851
Hpy99I CGWCG 2 cut(s) 22, 333
HpyAV CCTTC 2 cut(s) 440, 505
HpyCH4III ACNGT 2 cut(s) 787, 807
HpyCH4V TGCA 4 cut(s) 153, 676, 712, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 169, 347
HpyF3I CTNAG 2 cut(s) 168, 631
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 4 cut(s) 104, 209, 214, 422
HspAI GCGC 1 cut(s) 549
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Kzo9I GATC 2 cut(s) 332, 814
LmnI GCTCC 5 cut(s) 67, 177, 273, 310, 632
Lsp1109I GCAGC 2 cut(s) 395, 611
MabI ACCWGGT 1 cut(s) 541
MaeIII GTNAC 2 cut(s) 642, 888
MalI GATC 2 cut(s) 334, 816
MboI GATC 2 cut(s) 332, 814
MhlI GDGCHC 2 cut(s) 174, 278
MluCI AATT 1 cut(s) 444
MlyI GAGTC 1 cut(s) 562
MroNI GCCGGC 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 112, 669
MseI TTAA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 408
MspI CCGG 3 cut(s) 164, 308, 647
MspR9I CCNGG 5 cut(s) 308, 377, 435, 470, 543
MvaI CCWGG 4 cut(s) 377, 435, 470, 543
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 3 cut(s) 31, 169, 347
NaeI GCCGGC 1 cut(s) 165
NciI CCSGG 1 cut(s) 308
NdeII GATC 2 cut(s) 332, 814
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 4 cut(s) 104, 209, 214, 422
NmuCI GTSAC 2 cut(s) 642, 888
PagI TCATGA 2 cut(s) 205, 418
PasI CCCWGGG 1 cut(s) 469
PdiI GCCGGC 1 cut(s) 165
PdmI GAANNNNTTC 2 cut(s) 112, 669
PfeI GAWTC 6 cut(s) 48, 97, 113, 515, 568, 836
PflMI CCANNNNNTGG 1 cut(s) 661
PfoI TCCNGGA 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 646
PkrI GCNGC 3 cut(s) 24, 410, 626
PleI GAGTC 1 cut(s) 561
PpsI GAGTC 1 cut(s) 561
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 4 cut(s) 375, 433, 468, 541
PspEI GGTNACC 1 cut(s) 642
PspGI CCWGG 4 cut(s) 375, 433, 468, 541
PspPI GGNCC 3 cut(s) 305, 466, 848
PsrI GAACNNNNNNTAC 2 cut(s) 272, 304
PstI CTGCAG 1 cut(s) 888
PvuII CAGCTG 1 cut(s) 408
RsaI GTAC 2 cut(s) 248, 869
RsaNI GTAC 2 cut(s) 247, 868
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 3 cut(s) 23, 409, 625
Sau3AI GATC 2 cut(s) 332, 814
Sau96I GGNCC 3 cut(s) 305, 466, 848
ScaI AGTACT 1 cut(s) 869
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 5 cut(s) 308, 377, 435, 470, 543
SduI GDGCHC 2 cut(s) 174, 278
SexAI ACCWGGT 1 cut(s) 541
SfcI CTRYAG 2 cut(s) 43, 884
SgrAI CRCCGGYG 1 cut(s) 646
SinI GGWCC 1 cut(s) 848
Sse9I AATT 1 cut(s) 444
SsiI CCGC 3 cut(s) 23, 271, 640
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 5 cut(s) 306, 375, 433, 468, 541
TaaI ACNGT 2 cut(s) 787, 807
TaqI TCGA 4 cut(s) 144, 266, 328, 395
TaqII GACCGA 1 cut(s) 511
TasI AATT 1 cut(s) 444
TatI WGTACW 2 cut(s) 246, 867
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 6 cut(s) 48, 97, 113, 515, 568, 836
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 36, 642
TseFI GTSAC 2 cut(s) 642, 888
TseI GCWGC 2 cut(s) 408, 624
Tsp45I GTSAC 2 cut(s) 642, 888
TspDTI ATGAA 6 cut(s) 89, 407, 546, 581, 771, 789
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 2 cut(s) 36, 642
Van91I CCANNNNNTGG 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 848
XmnI GAANNNNTTC 2 cut(s) 112, 669
ZrmI AGTACT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.