Rroxscaffold_4G00294810
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
14777461 .. 14779937
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294810.1

Sequence Viewer

Length: 429 bp
ATGGATTTTTCGGTCGGTGGTGATGAAGGGGAACCGGTTAGCGGGAGTGTGTCCAATTGGGAAAATCAAGTTGTTGATGAAATGAATCAAGAGTGGAAGTCGTTTCCGCAAACCAATAGCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAAAGATTATCGTCTTCTAGACGGGAATGAAGTTTCAACTTGTGATAAAGATGAGACTATGTATGATGTGTTTTCACCGATTAGCGTTGTTAGCAACACACGCACCCCTCAACAGAGCCGGACTATTCCTTCCAACGAGGGGCCCACCAACATGCAACAGGCACAAAGGCCCCAACAATCGCTGACCACAAGACTTAAAAGAAGGGGCCAATGGAGTGTATTTGTAAGGGGTGGGAGGGGGTGTTTTGGTATTTACAATGTTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.0

Weight (kDa)

4.62

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 107
AfiI CCNNNNNNNGG 2 cut(s) 41, 300
AgeI ACCGGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 3 cut(s) 302, 329, 367
ApaI GGGCCC 1 cut(s) 306
AsiGI ACCGGT 1 cut(s) 34
AspS9I GGNCC 4 cut(s) 302, 303, 330, 367
AsuHPI GGTGA 3 cut(s) 32, 141, 228
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 179
BmgT120I GGNCC 4 cut(s) 302, 303, 330, 367
BmiI GGNNCC 5 cut(s) 33, 303, 304, 332, 368
BpiI GAAGAC 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 300
Bse118I RCCGGY 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 41, 300
BseSI GKGCMC 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 3 cut(s) 304, 331, 369
BshTI ACCGGT 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 15
BsiSI CCGG 2 cut(s) 35, 280
BslI CCNNNNNNNGG 2 cut(s) 41, 300
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 3 cut(s) 304, 331, 369
Bsp120I GGGCCC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 306
BspACI CCGC 2 cut(s) 42, 107
BspANI GGCC 3 cut(s) 304, 331, 369
BspLI GGNNCC 5 cut(s) 33, 303, 304, 332, 368
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 209
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 252, 261
BstNSI RCATGY 1 cut(s) 316
BstSLI GKGCMC 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 3 cut(s) 304, 331, 369
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 4 cut(s) 302, 303, 330, 367
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 1 cut(s) 313
CviJI RGCY 4 cut(s) 279, 304, 331, 369
CviKI_1 RGCY 4 cut(s) 279, 304, 331, 369
Eco24I GRGCYC 1 cut(s) 306
EcoO109I RGGNCCY 2 cut(s) 302, 330
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 1 cut(s) 316
FaiI YATR 3 cut(s) 221, 225, 314
FatI CATG 1 cut(s) 312
FauI CCCGC 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 306
FspBI CTAG 1 cut(s) 179
HaeIII GGCC 3 cut(s) 304, 331, 369
HapII CCGG 2 cut(s) 35, 280
Hin1II CATG 1 cut(s) 316
HinfI GANTC 1 cut(s) 85
HpaII CCGG 2 cut(s) 35, 280
HphI GGTGA 3 cut(s) 32, 141, 228
Hpy188III TCNNGA 2 cut(s) 89, 179
HpyAV CCTTC 3 cut(s) 20, 300, 357
HpyCH4V TGCA 2 cut(s) 145, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 261
Hsp92II CATG 1 cut(s) 316
LpnPI CCDG 3 cut(s) 48, 293, 305
MaeI CTAG 1 cut(s) 179
MboII GAAGA 1 cut(s) 167
MfeI CAATTG 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 3 cut(s) 279, 292, 390
MseI TTAA 2 cut(s) 357, 423
MslI CAYNNNNRTG 1 cut(s) 311
MspI CCGG 2 cut(s) 35, 280
MunI CAATTG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 252, 261
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 5 cut(s) 33, 303, 304, 332, 368
NspI RCATGY 1 cut(s) 316
PfeI GAWTC 1 cut(s) 85
PinAI ACCGGT 1 cut(s) 34
PspN4I GGNNCC 5 cut(s) 33, 303, 304, 332, 368
PspOMI GGGCCC 1 cut(s) 302
PspPI GGNCC 4 cut(s) 302, 303, 330, 367
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 2 cut(s) 357, 423
Sau96I GGNCC 4 cut(s) 302, 303, 330, 367
SduI GDGCHC 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 1 cut(s) 55
SsiI CCGC 2 cut(s) 42, 107
SspMI CTAG 1 cut(s) 179
TasI AATT 1 cut(s) 55
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 357, 423
Tru9I TTAA 2 cut(s) 357, 423
TspDTI ATGAA 4 cut(s) 39, 93, 98, 204
XbaI TCTAGA 1 cut(s) 178
XceI RCATGY 1 cut(s) 316
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.